Wall clock time and date at job start Tue Mar 31 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47389 * 270.00499 * 3 2 1 5 5 H 1.48502 * 109.46993 * 30.00566 * 3 2 1 6 6 H 1.48504 * 109.47256 * 150.00161 * 3 2 1 7 7 C 1.38955 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99732 * 179.72617 * 9 7 2 11 11 O 1.21288 * 120.00441 * 0.27237 * 10 9 7 12 12 C 1.50702 * 119.99708 * 180.27059 * 10 9 7 13 13 N 1.46499 * 109.46968 * 179.97438 * 12 10 9 14 14 C 1.34781 * 120.00011 * 179.97438 * 13 12 10 15 15 O 1.21581 * 120.00207 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99983 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00194 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47398 * 173.32648 * 17 16 14 19 19 H 1.08998 * 110.33431 * 60.94734 * 18 17 16 20 20 C 1.54904 * 110.37396 * 183.20225 * 18 17 16 21 21 C 1.55261 * 101.59746 * 155.81597 * 20 18 17 22 22 C 1.54310 * 103.08773 * 324.48996 * 21 20 18 23 23 N 1.47449 * 107.23361 * 22.20193 * 22 21 20 24 24 C 1.46900 * 110.99617 * 123.25750 * 23 22 21 25 25 C 1.52998 * 109.47021 * 57.49257 * 24 23 22 26 26 F 1.39897 * 109.47033 * 294.04256 * 25 24 23 27 27 F 1.39895 * 109.47391 * 54.04657 * 25 24 23 28 28 H 0.96996 * 120.00223 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00139 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47093 * 299.99741 * 12 10 9 31 31 H 1.08997 * 109.47442 * 59.99957 * 12 10 9 32 32 H 0.97005 * 120.00252 * 0.02562 * 13 12 10 33 33 H 0.97005 * 120.00280 * 0.02562 * 16 14 13 34 34 H 1.09010 * 109.47031 * 293.32851 * 17 16 14 35 35 H 1.09001 * 109.47035 * 53.32581 * 17 16 14 36 36 H 1.09001 * 110.99001 * 273.99093 * 20 18 17 37 37 H 1.09005 * 110.99125 * 37.80592 * 20 18 17 38 38 H 1.09005 * 110.74190 * 206.05297 * 21 20 18 39 39 H 1.08997 * 110.60613 * 82.86387 * 21 20 18 40 40 H 1.09008 * 109.89108 * 262.80155 * 22 21 20 41 41 H 1.08992 * 109.89085 * 141.60997 * 22 21 20 42 42 H 1.09004 * 109.46856 * 177.48875 * 24 23 22 43 43 H 1.08994 * 109.47535 * 297.48755 * 24 23 22 44 44 H 1.09005 * 109.46806 * 174.04627 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0077 11 8 3.2102 -3.5579 -0.0073 12 6 1.2438 -4.8629 -0.0150 13 7 2.1958 -5.9764 -0.0214 14 6 1.7465 -7.2471 -0.0280 15 8 0.5512 -7.4693 -0.0292 16 7 2.6223 -8.2715 -0.0343 17 6 2.1341 -9.6527 -0.0421 18 6 3.3148 -10.6101 -0.2159 19 1 4.0163 -10.5004 0.6111 20 6 2.8138 -12.0730 -0.3076 21 6 3.9750 -12.7526 -1.0825 22 6 4.4310 -11.6525 -2.0639 23 7 3.9950 -10.3598 -1.5044 24 6 5.1353 -9.4504 -1.3298 25 6 5.8374 -9.2488 -2.6742 26 9 6.4111 -10.4564 -3.0863 27 9 4.9056 -8.8256 -3.6281 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0016 30 1 0.6169 -4.9255 0.8744 31 1 0.6174 -4.9159 -0.9055 32 1 3.1495 -5.7992 -0.0200 33 1 3.5761 -8.0942 -0.0338 34 1 1.6297 -9.8651 0.9006 35 1 1.4339 -9.7859 -0.8668 36 1 2.6968 -12.5086 0.6847 37 1 1.8823 -12.1322 -0.8707 38 1 3.6172 -13.6282 -1.6243 39 1 4.7835 -13.0222 -0.4031 40 1 3.9683 -11.8097 -3.0383 41 1 5.5166 -11.6678 -2.1597 42 1 4.7800 -8.4894 -0.9578 43 1 5.8366 -9.8800 -0.6145 44 1 6.6166 -8.4941 -2.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599150310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:14 Heat of formation + Delta-G solvation = -152.841914 kcal Electronic energy + Delta-G solvation = -29104.897204 eV Core-core repulsion = 24535.304880 eV Total energy + Delta-G solvation = -4569.592325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.32067 -47.23128 -40.16468 -39.25963 -38.12477 -34.71372 -34.31996 -33.62174 -33.30918 -31.36901 -30.32839 -28.56687 -27.53294 -25.27365 -24.23109 -23.16642 -21.60906 -20.76615 -20.51796 -19.55726 -18.40645 -18.02971 -17.97992 -17.58648 -16.66150 -16.43670 -16.05372 -15.65509 -15.46748 -15.31979 -14.85092 -14.60498 -14.40873 -14.18328 -13.98678 -13.75107 -13.65602 -13.47013 -13.41979 -13.25124 -12.86619 -12.70718 -12.37857 -12.15693 -11.91644 -11.68960 -11.62613 -11.59842 -11.46162 -11.11497 -11.05701 -10.74412 -10.45309 -10.30889 -9.97602 -9.62180 -9.09631 -8.79716 -8.60631 -8.54660 -8.08379 -6.49903 -3.91883 2.83405 3.12579 3.22758 3.23476 3.28035 3.45333 3.48044 3.77423 3.87210 4.06627 4.08714 4.18630 4.25823 4.47232 4.54491 4.65778 4.78153 4.81491 4.92838 4.97688 5.08544 5.15755 5.18926 5.37609 5.40057 5.44424 5.60590 5.63839 5.81932 5.85596 5.96939 6.04733 6.10977 6.41577 6.50054 6.58608 6.79511 7.11112 7.47258 7.94038 8.26675 8.46995 8.85053 9.06132 9.41473 9.89314 10.67063 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002279 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.217050 B =12283.095975 C =13437.274205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.105 0.895 9 N -0.550 5.550 10 C 0.430 3.570 11 O -0.599 6.599 12 C 0.129 3.871 13 N -0.725 5.725 14 C 0.705 3.295 15 O -0.597 6.597 16 N -0.745 5.745 17 C 0.156 3.844 18 C 0.060 3.940 19 H 0.064 0.936 20 C -0.120 4.120 21 C -0.140 4.140 22 C 0.011 3.989 23 N -0.515 5.515 24 C -0.006 4.006 25 C 0.266 3.734 26 F -0.203 7.203 27 F -0.189 7.189 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.404 0.596 33 H 0.388 0.612 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.068 0.932 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.817 -24.255 -1.095 26.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.215 3.785 11 O -0.486 6.486 12 C 0.000 4.000 13 N -0.383 5.383 14 C 0.405 3.595 15 O -0.476 6.476 16 N -0.404 5.404 17 C 0.031 3.969 18 C -0.049 4.049 19 H 0.082 0.918 20 C -0.158 4.158 21 C -0.178 4.178 22 C -0.115 4.115 23 N -0.240 5.240 24 C -0.135 4.135 25 C 0.212 3.788 26 F -0.184 7.184 27 F -0.171 7.171 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.099 0.901 31 H 0.100 0.900 32 H 0.241 0.759 33 H 0.225 0.775 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.121 0.879 43 H 0.086 0.914 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 9.009 -24.019 -1.468 25.695 hybrid contribution 1.191 0.686 0.424 1.438 sum 10.199 -23.333 -1.044 25.486 Atomic orbital electron populations 1.69614 1.06000 1.28503 1.49355 1.25326 0.95667 0.99920 0.96854 0.85815 0.79196 0.80538 0.78475 1.20274 1.20816 1.19360 1.19716 0.93425 0.82016 1.48238 0.87720 1.41791 1.09510 1.04455 1.62681 1.19772 0.88278 0.85025 0.85390 1.90477 1.13787 1.86900 1.57426 1.20774 0.91234 0.84822 1.03135 1.44752 1.11051 1.03398 1.79070 1.15840 0.85227 0.80519 0.77927 1.90901 1.14057 1.84240 1.58383 1.45154 1.08617 1.05307 1.81289 1.21152 0.95059 0.78533 1.02108 1.22906 0.95870 0.95592 0.90499 0.91808 1.22690 0.99209 0.92712 1.01201 1.22795 0.98035 0.98716 0.98290 1.23486 1.02233 0.87008 0.98814 1.63544 1.23705 1.12305 1.24432 1.23510 0.94149 1.00508 0.95381 1.21935 0.88090 0.82828 0.85912 1.92822 1.85489 1.48354 1.91779 1.93046 1.67812 1.89729 1.66466 0.91597 0.76997 0.90059 0.90005 0.75859 0.77538 0.91514 0.90444 0.90225 0.89864 0.90470 0.91513 0.90174 0.89389 0.87853 0.91372 0.86596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.99 13.05 55.50 0.72 -23.26 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.55 29.55 -169.99 -5.02 15.53 16 4 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 8 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 9 N -0.55 -13.69 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.89 7.85 -10.98 -0.09 9.81 16 11 O -0.60 -15.22 15.24 5.55 0.08 -15.13 16 12 C 0.13 2.44 6.15 -5.19 -0.03 2.40 16 13 N -0.73 -12.34 5.53 -66.42 -0.37 -12.71 16 14 C 0.71 11.69 8.57 -86.92 -0.74 10.94 16 15 O -0.60 -11.97 16.32 5.29 0.09 -11.88 16 16 N -0.75 -9.04 5.35 -65.22 -0.35 -9.39 16 17 C 0.16 1.64 5.40 -4.04 -0.02 1.62 16 18 C 0.06 0.46 2.68 -66.19 -0.18 0.28 16 19 H 0.06 0.42 7.75 -51.93 -0.40 0.02 16 20 C -0.12 -0.75 6.51 -24.53 -0.16 -0.91 16 21 C -0.14 -0.83 6.94 -24.85 -0.17 -1.00 16 22 C 0.01 0.09 5.89 -2.84 -0.02 0.07 16 23 N -0.52 -4.39 4.67 -223.39 -1.04 -5.43 16 24 C -0.01 -0.04 4.95 -3.83 -0.02 -0.06 16 25 C 0.27 2.03 5.39 37.16 0.20 2.23 16 26 F -0.20 -1.71 13.94 2.25 0.03 -1.68 16 27 F -0.19 -2.18 17.15 2.25 0.04 -2.14 16 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.40 6.59 7.45 -40.82 -0.30 6.28 16 33 H 0.39 3.83 5.46 -40.82 -0.22 3.60 16 34 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 35 H 0.08 0.97 8.11 -51.93 -0.42 0.55 16 36 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.09 0.66 4.89 -51.93 -0.25 0.41 16 42 H 0.10 0.72 5.26 -51.93 -0.27 0.45 16 43 H 0.07 0.35 8.05 -51.93 -0.42 -0.07 16 44 H 0.12 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -33.39 366.46 -7.75 -41.14 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: -5.93 Total: 15.66 kcal Atomic # 6 Polarization: 18.99 SS G_CDS: -1.47 Total: 17.52 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -1.09 Total: -64.54 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: 0.17 Total: -27.02 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.07 Total: -3.82 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.39 -7.75 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599150310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.698 kcal (2) G-P(sol) polarization free energy of solvation -33.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds