Wall clock time and date at job start Tue Mar 31 2020 18:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86794 * 120.00017 * 2 1 4 4 H 1.48502 * 109.47389 * 270.00499 * 3 2 1 5 5 H 1.48502 * 109.46993 * 30.00566 * 3 2 1 6 6 H 1.48504 * 109.47256 * 150.00161 * 3 2 1 7 7 C 1.38955 * 120.00002 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99997 * 179.97438 * 7 2 1 9 9 N 1.37095 * 119.99949 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99732 * 179.72617 * 9 7 2 11 11 O 1.21288 * 120.00441 * 0.27237 * 10 9 7 12 12 C 1.50702 * 119.99708 * 180.27059 * 10 9 7 13 13 N 1.46499 * 109.46968 * 179.97438 * 12 10 9 14 14 C 1.34781 * 120.00011 * 179.97438 * 13 12 10 15 15 O 1.21581 * 120.00207 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99983 * 179.97438 * 14 13 12 17 17 C 1.46500 * 120.00194 * 180.02562 * 16 14 13 18 18 C 1.52998 * 109.47398 * 173.32648 * 17 16 14 19 19 H 1.08998 * 110.33431 * 60.94734 * 18 17 16 20 20 C 1.54904 * 110.37396 * 183.20225 * 18 17 16 21 21 C 1.55261 * 101.59746 * 155.81597 * 20 18 17 22 22 C 1.54310 * 103.08773 * 324.48996 * 21 20 18 23 23 N 1.47449 * 107.23361 * 22.20193 * 22 21 20 24 24 C 1.46900 * 110.99617 * 123.25750 * 23 22 21 25 25 C 1.52998 * 109.47021 * 57.49257 * 24 23 22 26 26 F 1.39897 * 109.47033 * 294.04256 * 25 24 23 27 27 F 1.39895 * 109.47391 * 54.04657 * 25 24 23 28 28 H 0.96996 * 120.00223 * 359.97438 * 1 2 3 29 29 H 0.97001 * 120.00139 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.47093 * 299.99741 * 12 10 9 31 31 H 1.08997 * 109.47442 * 59.99957 * 12 10 9 32 32 H 0.97005 * 120.00252 * 0.02562 * 13 12 10 33 33 H 0.97005 * 120.00280 * 0.02562 * 16 14 13 34 34 H 1.09010 * 109.47031 * 293.32851 * 17 16 14 35 35 H 1.09001 * 109.47035 * 53.32581 * 17 16 14 36 36 H 1.09001 * 110.99001 * 273.99093 * 20 18 17 37 37 H 1.09005 * 110.99125 * 37.80592 * 20 18 17 38 38 H 1.09005 * 110.74190 * 206.05297 * 21 20 18 39 39 H 1.08997 * 110.60613 * 82.86387 * 21 20 18 40 40 H 1.09008 * 109.89108 * 262.80155 * 22 21 20 41 41 H 1.08992 * 109.89085 * 141.60997 * 22 21 20 42 42 H 1.09004 * 109.46856 * 177.48875 * 24 23 22 43 43 H 1.08994 * 109.47535 * 297.48755 * 24 23 22 44 44 H 1.09005 * 109.46806 * 174.04627 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4456 2.6526 0.7002 6 1 3.5457 1.4401 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0077 11 8 3.2102 -3.5579 -0.0073 12 6 1.2438 -4.8629 -0.0150 13 7 2.1958 -5.9764 -0.0214 14 6 1.7465 -7.2471 -0.0280 15 8 0.5512 -7.4693 -0.0292 16 7 2.6223 -8.2715 -0.0343 17 6 2.1341 -9.6527 -0.0421 18 6 3.3148 -10.6101 -0.2159 19 1 4.0163 -10.5004 0.6111 20 6 2.8138 -12.0730 -0.3076 21 6 3.9750 -12.7526 -1.0825 22 6 4.4310 -11.6525 -2.0639 23 7 3.9950 -10.3598 -1.5044 24 6 5.1353 -9.4504 -1.3298 25 6 5.8374 -9.2488 -2.6742 26 9 6.4111 -10.4564 -3.0863 27 9 4.9056 -8.8256 -3.6281 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0016 30 1 0.6169 -4.9255 0.8744 31 1 0.6174 -4.9159 -0.9055 32 1 3.1495 -5.7992 -0.0200 33 1 3.5761 -8.0942 -0.0338 34 1 1.6297 -9.8651 0.9006 35 1 1.4339 -9.7859 -0.8668 36 1 2.6968 -12.5086 0.6847 37 1 1.8823 -12.1322 -0.8707 38 1 3.6172 -13.6282 -1.6243 39 1 4.7835 -13.0222 -0.4031 40 1 3.9683 -11.8097 -3.0383 41 1 5.5166 -11.6678 -2.1597 42 1 4.7800 -8.4894 -0.9578 43 1 5.8366 -9.8800 -0.6145 44 1 6.6166 -8.4941 -2.5676 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599150310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:13 Heat of formation + Delta-G solvation = -179.215645 kcal Electronic energy + Delta-G solvation = -29106.040855 eV Core-core repulsion = 24535.304880 eV Total energy + Delta-G solvation = -4570.735975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.97782 -47.94088 -41.29802 -40.31634 -39.75956 -36.25786 -35.68247 -35.24619 -33.86619 -33.35662 -31.19835 -29.12979 -29.03102 -26.63483 -25.59577 -23.82604 -22.27753 -21.69553 -21.45781 -21.30750 -20.09518 -19.51037 -18.62392 -18.31994 -17.58714 -17.40741 -17.14136 -17.03516 -16.72329 -16.47339 -16.05764 -15.90447 -15.83195 -15.38840 -15.23434 -15.08940 -14.52729 -14.34133 -14.14955 -13.96755 -13.91818 -13.69152 -13.53179 -13.47631 -13.32404 -13.03180 -12.88875 -12.44230 -12.39066 -12.20895 -12.11668 -12.00383 -11.59181 -11.55500 -11.38054 -11.30345 -10.53740 -10.40030 -10.08790 -9.77586 -9.37808 -8.49574 -5.99718 1.37587 1.43359 1.55150 1.63484 1.91470 2.15801 2.29728 2.67089 2.88971 3.05070 3.17783 3.30250 3.34901 3.54787 3.66295 3.75209 3.99724 4.08731 4.17612 4.23526 4.23923 4.43820 4.45369 4.47968 4.52749 4.60236 4.66066 4.79811 4.90361 5.01965 5.04981 5.15743 5.33063 5.34330 5.40144 5.49943 5.88213 5.92435 5.94323 5.96344 6.49501 7.03470 7.04771 7.44514 7.56013 7.95772 8.67453 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018450 B = 0.002279 C = 0.002083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.217050 B =12283.095975 C =13437.274205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.012 4.012 3 Si 0.997 3.003 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.336 4.336 8 H 0.087 0.913 9 N -0.560 5.560 10 C 0.435 3.565 11 O -0.622 6.622 12 C 0.142 3.858 13 N -0.724 5.724 14 C 0.703 3.297 15 O -0.633 6.633 16 N -0.727 5.727 17 C 0.156 3.844 18 C 0.067 3.933 19 H 0.084 0.916 20 C -0.117 4.117 21 C -0.132 4.132 22 C 0.013 3.987 23 N -0.539 5.539 24 C -0.006 4.006 25 C 0.257 3.743 26 F -0.208 7.208 27 F -0.216 7.216 28 H 0.279 0.721 29 H 0.399 0.601 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.409 0.591 33 H 0.402 0.598 34 H 0.072 0.928 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.059 0.941 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.058 -24.911 -0.292 27.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.213 4.213 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.465 4.465 8 H 0.105 0.895 9 N -0.196 5.196 10 C 0.222 3.778 11 O -0.510 6.510 12 C 0.013 3.987 13 N -0.382 5.382 14 C 0.403 3.597 15 O -0.515 6.515 16 N -0.385 5.385 17 C 0.031 3.969 18 C -0.041 4.041 19 H 0.102 0.898 20 C -0.156 4.156 21 C -0.171 4.171 22 C -0.114 4.114 23 N -0.264 5.264 24 C -0.136 4.136 25 C 0.203 3.797 26 F -0.190 7.190 27 F -0.198 7.198 28 H 0.089 0.911 29 H 0.233 0.767 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.247 0.753 33 H 0.241 0.759 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.109 0.891 42 H 0.120 0.880 43 H 0.112 0.888 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 10.280 -24.716 -0.668 26.777 hybrid contribution 0.822 0.806 0.149 1.161 sum 11.102 -23.910 -0.519 26.367 Atomic orbital electron populations 1.69684 1.07043 1.29610 1.49380 1.26145 0.96538 1.02733 0.95856 0.84860 0.77935 0.76462 0.78677 1.19624 1.19729 1.19319 1.19738 0.92973 0.83489 1.50289 0.89467 1.41845 1.09604 1.04620 1.63505 1.20382 0.88117 0.85830 0.83433 1.90454 1.15066 1.87544 1.57978 1.20571 0.91058 0.83176 1.03914 1.44655 1.10878 1.03251 1.79393 1.15980 0.85188 0.80826 0.77707 1.90877 1.15804 1.84712 1.60103 1.45089 1.08849 1.05031 1.79560 1.21280 0.96190 0.77999 1.01412 1.22855 0.95024 0.95381 0.90865 0.89842 1.22702 0.98855 0.91869 1.02138 1.22767 0.98171 0.98164 0.97975 1.23418 1.02167 0.87402 0.98401 1.63434 1.24881 1.13002 1.25096 1.23566 0.94238 1.00242 0.95520 1.22426 0.88530 0.83347 0.85373 1.92806 1.85473 1.48849 1.91857 1.92989 1.69037 1.90052 1.67690 0.91103 0.76735 0.89030 0.89391 0.75329 0.75948 0.91027 0.92793 0.88401 0.90934 0.89936 0.90114 0.92216 0.89094 0.88021 0.88755 0.83337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 2 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 3 Si 1.00 41.67 29.55 68.60 2.03 43.70 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 7 C -0.34 -18.44 9.68 84.04 0.81 -17.63 16 8 H 0.09 5.01 7.16 -2.91 -0.02 4.99 16 9 N -0.56 -28.21 5.29 -306.98 -1.62 -29.83 16 10 C 0.44 20.08 7.85 87.66 0.69 20.77 16 11 O -0.62 -31.68 15.24 -3.06 -0.05 -31.73 16 12 C 0.14 5.29 6.15 85.63 0.53 5.82 16 13 N -0.72 -24.10 5.53 -482.30 -2.67 -26.77 16 14 C 0.70 22.83 8.57 179.05 1.53 24.36 16 15 O -0.63 -25.26 16.32 -3.97 -0.06 -25.32 16 16 N -0.73 -16.78 5.35 -478.53 -2.56 -19.35 16 17 C 0.16 3.11 5.40 86.38 0.47 3.58 16 18 C 0.07 0.89 2.68 45.38 0.12 1.01 16 19 H 0.08 0.83 7.75 -2.39 -0.02 0.81 16 20 C -0.12 -1.25 6.51 32.02 0.21 -1.04 16 21 C -0.13 -1.29 6.94 31.82 0.22 -1.07 16 22 C 0.01 0.18 5.89 86.64 0.51 0.70 16 23 N -0.54 -8.45 4.67 -860.68 -4.02 -12.47 16 24 C -0.01 -0.08 4.95 86.30 0.43 0.35 16 25 C 0.26 3.57 5.39 71.98 0.39 3.96 16 26 F -0.21 -3.26 13.94 44.97 0.63 -2.63 16 27 F -0.22 -4.94 17.15 44.97 0.77 -4.17 16 28 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 29 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 30 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 31 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 32 H 0.41 12.96 7.45 -92.70 -0.69 12.27 16 33 H 0.40 7.21 5.46 -92.70 -0.51 6.70 16 34 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 35 H 0.05 1.36 8.11 -2.39 -0.02 1.34 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.94 8.06 -2.38 -0.02 0.92 16 38 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.09 1.23 4.89 -2.39 -0.01 1.22 16 42 H 0.10 1.22 5.26 -2.38 -0.01 1.21 16 43 H 0.09 0.65 8.05 -2.39 -0.02 0.63 16 44 H 0.15 1.05 8.14 -2.38 -0.02 1.03 16 Total: -1.00 -71.89 366.46 -1.75 -73.65 By element: Atomic # 1 Polarization: 43.81 SS G_CDS: -0.86 Total: 42.95 kcal Atomic # 6 Polarization: 34.26 SS G_CDS: 6.37 Total: 40.63 kcal Atomic # 7 Polarization: -126.49 SS G_CDS: -10.59 Total: -137.08 kcal Atomic # 8 Polarization: -56.94 SS G_CDS: -0.11 Total: -57.05 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 1.40 Total: -6.80 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -71.89 -1.75 -73.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599150310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.568 kcal (2) G-P(sol) polarization free energy of solvation -71.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds