Wall clock time and date at job start Tue Mar 31 2020 17:51:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34781 * 119.99594 * 2 1 4 4 O 1.21641 * 119.99472 * 184.61965 * 3 2 1 5 5 C 1.47179 * 120.00424 * 4.61900 * 3 2 1 6 6 C 1.35625 * 123.18966 * 316.20346 * 5 3 2 7 7 S 1.70265 * 110.84314 * 179.78102 * 6 5 3 8 8 C 1.75598 * 92.62830 * 0.25615 * 7 6 5 9 9 C 1.34005 * 110.59328 * 0.02562 * 8 7 6 10 10 C 1.52021 * 123.45889 * 180.02562 * 9 8 7 11 11 C 1.53046 * 108.75206 * 342.84495 * 10 9 8 12 12 C 1.53157 * 109.20099 * 50.67909 * 11 10 9 13 13 C 1.51607 * 125.05111 * 180.02562 * 8 7 6 14 14 C 1.46498 * 120.00173 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.64138 * 178.30894 * 14 2 1 16 16 C 1.55160 * 110.71829 * 54.98030 * 14 2 1 17 17 C 1.54917 * 101.57622 * 277.13606 * 16 14 2 18 18 N 1.47424 * 104.83127 * 322.98894 * 17 16 14 19 19 C 1.36938 * 125.64718 * 204.09230 * 18 17 16 20 20 H 1.07998 * 120.00273 * 164.80836 * 19 18 17 21 21 C 1.38816 * 119.99882 * 344.80819 * 19 18 17 22 22 N 1.31618 * 120.00178 * 351.02535 * 21 19 18 23 23 Si 1.86806 * 120.00072 * 171.02734 * 21 19 18 24 24 H 1.48494 * 109.46807 * 94.87263 * 23 21 19 25 25 H 1.48494 * 109.47087 * 214.87352 * 23 21 19 26 26 H 1.48495 * 109.46715 * 334.87436 * 23 21 19 27 27 C 1.47013 * 108.70388 * 24.13331 * 18 17 16 28 28 H 1.08996 * 109.47426 * 92.84516 * 1 2 3 29 29 H 1.09001 * 109.46829 * 212.84504 * 1 2 3 30 30 H 1.08998 * 109.47725 * 332.84217 * 1 2 3 31 31 H 1.07995 * 124.57819 * 0.06048 * 6 5 3 32 32 H 1.09001 * 109.58922 * 102.62834 * 10 9 8 33 33 H 1.08997 * 109.58939 * 222.91901 * 10 9 8 34 34 H 1.08998 * 109.51192 * 170.59123 * 11 10 9 35 35 H 1.08996 * 109.51665 * 290.69998 * 11 10 9 36 36 H 1.09003 * 109.54439 * 49.49365 * 12 11 10 37 37 H 1.08993 * 109.54235 * 169.66437 * 12 11 10 38 38 H 1.09000 * 109.59524 * 43.61711 * 13 8 7 39 39 H 1.09003 * 109.71861 * 283.23442 * 13 8 7 40 40 H 1.09000 * 111.00973 * 35.20633 * 16 14 2 41 41 H 1.09004 * 111.00589 * 159.06420 * 16 14 2 42 42 H 1.09008 * 110.36128 * 204.15099 * 17 16 14 43 43 H 1.08993 * 110.46117 * 81.88034 * 17 16 14 44 44 H 0.96999 * 120.00196 * 179.97438 * 22 21 19 45 45 H 1.09009 * 109.88137 * 239.51918 * 27 18 17 46 46 H 1.09000 * 109.88740 * 118.35902 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3522 1.1690 -0.0848 5 6 1.4065 2.4398 0.1026 6 6 0.2739 2.7031 -0.5956 7 16 -0.3122 4.2603 -0.2345 8 6 1.0018 4.5835 0.8847 9 6 1.8302 3.5325 0.9550 10 6 3.0673 3.4979 1.8379 11 6 3.4190 4.9298 2.2482 12 6 2.1694 5.6141 2.8103 13 6 1.1827 5.8693 1.6672 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0916 -0.0296 16 6 1.7507 -2.1610 -1.1876 17 6 0.4719 -2.8225 -0.6158 18 7 0.7746 -3.0618 0.8070 19 6 0.1812 -4.0063 1.6013 20 1 0.6282 -4.2746 2.5472 21 6 -0.9948 -4.6191 1.1908 22 7 -1.6341 -4.1725 0.1305 23 14 -1.6700 -6.0774 2.1431 24 1 -2.6748 -5.6029 3.1281 25 1 -2.3114 -7.0295 1.2012 26 1 -0.5604 -6.7589 2.8569 27 6 1.8182 -2.1176 1.2322 28 1 -0.3634 -0.0510 -1.0263 29 1 -0.3633 -0.8634 0.5574 30 1 -0.3634 0.9143 0.4690 31 1 -0.1954 2.0159 -1.2839 32 1 2.8646 2.9020 2.7278 33 1 3.8982 3.0591 1.2857 34 1 4.1972 4.9092 3.0112 35 1 3.7766 5.4805 1.3782 36 1 1.7049 4.9692 3.5562 37 1 2.4486 6.5617 3.2708 38 1 0.2235 6.1862 2.0765 39 1 1.5752 6.6467 1.0116 40 1 1.5192 -1.5567 -2.0647 41 1 2.5077 -2.9102 -1.4198 42 1 0.2725 -3.7655 -1.1251 43 1 -0.3811 -2.1512 -0.7146 44 1 -2.4557 -4.6009 -0.1566 45 1 2.6910 -2.6654 1.5879 46 1 1.4350 -1.4729 2.0231 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033644713.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:14 Heat of formation + Delta-G solvation = 19.583553 kcal Electronic energy + Delta-G solvation = -27225.315374 eV Core-core repulsion = 23627.889628 eV Total energy + Delta-G solvation = -3597.425745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25840 -38.72578 -37.27094 -35.22895 -34.18170 -32.07574 -30.93116 -29.57838 -28.93282 -27.90580 -26.38204 -24.95414 -23.89966 -23.40150 -22.10382 -20.38755 -20.10218 -18.68576 -18.36299 -17.35442 -16.91451 -16.72209 -15.82011 -15.17306 -14.73003 -14.61664 -14.52916 -14.29926 -13.99040 -13.90086 -13.49451 -13.22746 -13.05635 -12.69518 -12.60085 -12.32852 -12.14072 -11.97826 -11.80263 -11.59592 -11.54195 -11.39772 -11.06844 -11.01989 -10.88680 -10.84658 -10.80560 -10.50727 -10.31878 -10.07095 -9.98968 -9.73710 -9.45221 -8.64493 -8.60680 -8.37243 -8.19826 -6.80321 -5.80633 -3.14540 0.82270 1.46134 1.86612 2.06901 3.09809 3.36552 3.43175 3.44948 3.45348 4.40196 4.46628 4.61304 4.69154 4.82072 4.87414 5.06732 5.14935 5.33830 5.37536 5.39408 5.44225 5.47290 5.48336 5.59011 5.63178 5.70386 5.72777 5.76987 5.84351 5.90003 5.92364 5.98218 6.12967 6.16896 6.24724 6.27895 6.37300 6.47343 6.52077 6.60551 6.71230 7.04685 7.39205 7.53732 7.72692 7.73543 8.21442 8.41250 9.14556 9.76011 10.44969 11.32884 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.017835 B = 0.003020 C = 0.002952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.564734 B = 9269.648242 C = 9481.969275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.585 5.585 3 C 0.575 3.425 4 O -0.545 6.545 5 C -0.136 4.136 6 C -0.213 4.213 7 S 0.166 5.834 8 C -0.208 4.208 9 C -0.055 4.055 10 C -0.062 4.062 11 C -0.118 4.118 12 C -0.117 4.117 13 C -0.042 4.042 14 C 0.128 3.872 15 H 0.101 0.899 16 C -0.156 4.156 17 C 0.167 3.833 18 N -0.600 5.600 19 C -0.231 4.231 20 H 0.074 0.926 21 C -0.003 4.003 22 N -0.916 5.916 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.290 1.290 26 H -0.280 1.280 27 C 0.126 3.874 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.173 0.827 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.253 0.747 45 H 0.033 0.967 46 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 20.528 0.156 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.316 5.316 3 C 0.361 3.639 4 O -0.424 6.424 5 C -0.154 4.154 6 C -0.351 4.351 7 S 0.435 5.565 8 C -0.324 4.324 9 C -0.066 4.066 10 C -0.101 4.101 11 C -0.156 4.156 12 C -0.156 4.156 13 C -0.081 4.081 14 C 0.024 3.976 15 H 0.119 0.881 16 C -0.195 4.195 17 C 0.042 3.958 18 N -0.327 5.327 19 C -0.359 4.359 20 H 0.092 0.908 21 C -0.200 4.200 22 N -0.562 5.562 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.216 1.216 26 H -0.206 1.206 27 C -0.001 4.001 28 H 0.072 0.928 29 H 0.122 0.878 30 H 0.085 0.915 31 H 0.191 0.809 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.051 0.949 46 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.381 21.186 -0.421 21.458 hybrid contribution 0.466 -1.875 0.701 2.055 sum 3.847 19.311 0.280 19.692 Atomic orbital electron populations 1.22305 0.79033 1.04517 1.01961 1.47698 1.07453 1.05221 1.71188 1.17717 0.86751 0.82904 0.76495 1.90732 1.13484 1.87188 1.50983 1.20060 0.97069 0.96304 1.01951 1.25560 1.00409 1.02686 1.06398 1.82823 1.26276 1.08489 1.38865 1.24617 1.00397 1.01107 1.06301 1.20323 0.97471 0.90889 0.97926 1.20573 0.94503 0.97181 0.97888 1.21564 0.97432 0.95591 1.00991 1.21593 0.95781 1.00945 0.97234 1.20279 1.00128 0.91898 0.95826 1.22131 0.96462 0.81964 0.96999 0.88102 1.23335 1.01316 0.98461 0.96417 1.21554 0.91274 0.98737 0.84254 1.44473 1.43419 1.37748 1.07030 1.18986 1.02996 1.12539 1.01404 0.90840 1.24855 0.96349 1.00319 0.98510 1.69934 1.17963 1.41794 1.26556 0.86146 0.78771 0.82242 0.78857 1.21597 1.21645 1.20580 1.21658 0.92989 0.91331 0.94088 0.92830 0.87797 0.91537 0.80919 0.90581 0.88953 0.91257 0.91615 0.91372 0.91193 0.90589 0.90398 0.91932 0.90982 0.92307 0.94147 0.93706 0.94885 0.95417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 7.14 59.84 0.43 1.50 16 2 N -0.58 -10.24 2.82 -173.20 -0.49 -10.73 16 3 C 0.57 10.01 7.21 -12.63 -0.09 9.92 16 4 O -0.54 -10.71 15.05 5.24 0.08 -10.63 16 5 C -0.14 -2.01 5.14 -104.56 -0.54 -2.55 16 6 C -0.21 -2.68 8.42 29.80 0.25 -2.43 16 7 S 0.17 1.72 22.99 -107.50 -2.47 -0.75 16 8 C -0.21 -2.31 6.32 -35.35 -0.22 -2.54 16 9 C -0.05 -0.73 5.94 -102.82 -0.61 -1.34 16 10 C -0.06 -0.76 5.71 -27.21 -0.16 -0.91 16 11 C -0.12 -1.07 5.90 -26.63 -0.16 -1.23 16 12 C -0.12 -0.92 5.93 -26.57 -0.16 -1.08 16 13 C -0.04 -0.35 6.26 -27.36 -0.17 -0.52 16 14 C 0.13 2.40 3.58 -66.10 -0.24 2.16 16 15 H 0.10 1.89 7.00 -51.93 -0.36 1.52 16 16 C -0.16 -2.94 6.53 -24.58 -0.16 -3.10 16 17 C 0.17 3.83 4.49 -2.53 -0.01 3.82 16 18 N -0.60 -14.82 2.97 -170.07 -0.51 -15.33 16 19 C -0.23 -6.29 10.21 -15.06 -0.15 -6.44 16 20 H 0.07 1.97 7.84 -52.49 -0.41 1.56 16 21 C 0.00 -0.09 5.39 -17.43 -0.09 -0.18 16 22 N -0.92 -25.84 10.88 55.49 0.60 -25.24 16 23 Si 0.91 21.65 29.56 -169.99 -5.03 16.63 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 27 C 0.13 2.67 6.22 -3.07 -0.02 2.65 16 28 H 0.05 0.82 7.38 -51.93 -0.38 0.44 16 29 H 0.10 2.11 5.41 -51.93 -0.28 1.83 16 30 H 0.07 0.99 5.49 -51.93 -0.29 0.70 16 31 H 0.17 2.01 6.54 -52.49 -0.34 1.67 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.09 1.29 6.96 -51.93 -0.36 0.93 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 36 H 0.07 0.57 8.11 -51.93 -0.42 0.15 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.06 1.52 7.28 -51.92 -0.38 1.14 16 43 H 0.04 0.96 5.33 -51.93 -0.28 0.69 16 44 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 46 H 0.03 0.61 8.04 -51.93 -0.42 0.19 16 LS Contribution 362.93 15.07 5.47 5.47 Total: -1.00 -30.43 362.93 -11.30 -41.73 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.86 Total: 1.13 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -2.10 Total: -2.28 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: -0.39 Total: -51.29 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.08 Total: -10.63 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.63 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.47 Total: -0.75 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.43 -11.30 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033644713.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.314 kcal (2) G-P(sol) polarization free energy of solvation -30.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds