Wall clock time and date at job start Tue Mar 31 2020 18:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35713 * 117.00102 * 2 1 4 4 C 1.39100 * 119.88608 * 0.02653 * 3 2 1 5 5 C 1.37609 * 120.16060 * 179.97438 * 4 3 2 6 6 C 1.39814 * 119.93286 * 0.02570 * 5 4 3 7 7 C 1.47455 * 120.10901 * 180.02562 * 6 5 4 8 8 O 1.21604 * 119.99723 * 204.34245 * 7 6 5 9 9 N 1.34774 * 120.00149 * 24.33808 * 7 6 5 10 10 C 1.47381 * 135.85262 * 5.08532 * 9 7 6 11 11 C 1.52076 * 87.41302 * 154.38608 * 10 9 7 12 12 C 1.47397 * 135.85157 * 185.45383 * 9 7 6 13 13 C 1.53516 * 117.21188 * 267.28115 * 11 10 9 14 14 C 1.54620 * 102.70289 * 262.92647 * 13 11 10 15 15 N 1.47143 * 107.37892 * 339.38390 * 14 13 11 16 16 C 1.36941 * 125.58092 * 179.04336 * 15 14 13 17 17 H 1.08001 * 120.00067 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00220 * 0.02569 * 16 15 14 19 19 N 1.31624 * 119.99616 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00283 * 180.02562 * 18 16 15 21 21 H 1.48493 * 109.47400 * 89.99717 * 20 18 16 22 22 H 1.48502 * 109.47172 * 210.00126 * 20 18 16 23 23 H 1.48500 * 109.46991 * 329.99795 * 20 18 16 24 24 C 1.47757 * 108.83996 * 359.08973 * 15 14 13 25 25 C 1.39981 * 119.78260 * 359.97438 * 6 5 4 26 26 F 1.35099 * 120.08359 * 180.02562 * 25 6 5 27 27 C 1.38068 * 119.83673 * 359.97438 * 25 6 5 28 28 H 1.08998 * 109.47472 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46849 * 299.99851 * 1 2 3 30 30 H 1.08997 * 109.47701 * 59.99507 * 1 2 3 31 31 H 1.07996 * 119.92331 * 359.97438 * 4 3 2 32 32 H 1.08003 * 120.03312 * 179.97438 * 5 4 3 33 33 H 1.09002 * 113.54676 * 268.99581 * 10 9 7 34 34 H 1.09002 * 113.54786 * 39.67699 * 10 9 7 35 35 H 1.08994 * 113.54019 * 320.32223 * 12 9 7 36 36 H 1.08994 * 113.54374 * 90.93394 * 12 9 7 37 37 H 1.09004 * 110.76448 * 21.22945 * 13 11 10 38 38 H 1.08998 * 110.76277 * 144.62024 * 13 11 10 39 39 H 1.08998 * 109.87001 * 98.83879 * 14 13 11 40 40 H 1.09005 * 109.86703 * 219.93556 * 14 13 11 41 41 H 0.97006 * 119.99617 * 180.02562 * 19 18 16 42 42 H 1.09003 * 110.40473 * 263.50159 * 24 15 14 43 43 H 1.09005 * 110.40439 * 141.07614 * 24 15 14 44 44 H 1.07996 * 119.96597 * 180.30190 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 1.2852 2.3743 0.0006 5 6 1.9041 3.6034 0.0011 6 6 3.3000 3.6816 0.0005 7 6 3.9672 4.9965 0.0017 8 8 5.0978 5.1050 -0.4328 9 7 3.3240 6.0782 0.4842 10 6 2.0368 6.3307 1.1561 11 6 2.6779 7.5659 1.7693 12 6 3.5990 7.5241 0.5636 13 6 3.3296 7.4064 3.1501 14 6 2.2213 7.9007 4.1083 15 7 1.3003 8.7360 3.3214 16 6 0.1732 9.3484 3.8007 17 1 -0.4406 9.9431 3.1404 18 6 -0.1806 9.2049 5.1353 19 7 0.5672 8.4797 5.9399 20 14 -1.7185 10.0397 5.7890 21 1 -2.8792 9.1255 5.6404 22 1 -1.5298 10.3711 7.2242 23 1 -1.9690 11.2864 5.0219 24 6 1.7901 8.8048 1.9290 25 6 4.0622 2.5074 0.0000 26 9 5.4115 2.5759 0.0000 27 6 3.4317 1.2792 0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 0.2069 2.3142 0.0006 32 1 1.3121 4.5067 0.0011 33 1 1.2234 6.5588 0.4673 34 1 1.7704 5.5678 1.8877 35 1 4.6370 7.7574 0.8004 36 1 3.2242 8.0861 -0.2917 37 1 3.5713 6.3616 3.3451 38 1 4.2187 8.0316 3.2323 39 1 1.6844 7.0485 4.5247 40 1 2.6622 8.4912 4.9115 41 1 0.3198 8.3791 6.8725 42 1 2.3735 9.7128 1.7759 43 1 0.9546 8.7664 1.2299 44 1 4.0176 0.3720 0.0050 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072900721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:29 Heat of formation + Delta-G solvation = -11.948166 kcal Electronic energy + Delta-G solvation = -28760.976901 eV Core-core repulsion = 24595.970661 eV Total energy + Delta-G solvation = -4165.006240 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.03720 -40.91820 -40.31040 -38.48933 -37.10849 -35.69771 -32.36102 -31.59435 -30.59163 -29.41619 -28.69275 -27.75920 -26.10935 -25.79498 -24.04060 -23.39507 -22.51611 -20.35500 -19.81932 -18.92031 -18.32867 -17.42528 -17.15678 -16.74114 -16.35330 -16.27468 -15.93992 -15.61116 -15.31236 -15.09772 -14.94668 -14.60499 -14.10273 -13.87274 -13.61177 -13.49045 -13.06787 -12.81200 -12.71501 -12.57386 -12.40024 -12.25511 -11.97345 -11.86591 -11.40898 -11.36067 -11.03074 -10.96025 -10.70336 -10.46583 -10.23464 -10.14057 -9.89919 -9.71990 -9.62473 -9.25078 -8.75259 -8.63848 -8.51029 -6.88036 -5.75204 -3.09168 0.55557 0.82864 2.65988 2.67571 2.83293 3.36580 3.42149 3.43522 3.44178 4.03308 4.27558 4.29081 4.44566 4.53053 4.60463 4.68725 4.75586 4.88830 4.92361 4.97378 5.10090 5.21735 5.33215 5.45740 5.52014 5.60593 5.62942 5.63952 5.74031 5.78468 5.80648 5.84607 5.93277 6.12959 6.21134 6.26843 6.42668 6.50400 6.62637 6.67212 6.84474 7.51794 7.58436 7.77267 7.79180 8.17752 8.20879 9.17362 9.77491 10.43029 11.36210 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.012903 B = 0.003093 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.545483 B = 9050.132034 C =10509.317197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.310 6.310 3 C 0.180 3.820 4 C -0.226 4.226 5 C -0.014 4.014 6 C -0.201 4.201 7 C 0.589 3.411 8 O -0.536 6.536 9 N -0.638 5.638 10 C 0.115 3.885 11 C -0.104 4.104 12 C 0.121 3.879 13 C -0.117 4.117 14 C 0.180 3.820 15 N -0.605 5.605 16 C -0.229 4.229 17 H 0.078 0.922 18 C -0.007 4.007 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.154 3.846 25 C 0.197 3.803 26 F -0.112 7.112 27 C -0.202 4.202 28 H 0.104 0.896 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.064 0.936 39 H 0.047 0.953 40 H 0.044 0.956 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.042 0.958 44 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.183 -14.304 -12.951 19.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.134 3.866 4 C -0.245 4.245 5 C -0.033 4.033 6 C -0.206 4.206 7 C 0.379 3.621 8 O -0.414 6.414 9 N -0.373 5.373 10 C -0.008 4.008 11 C -0.106 4.106 12 C -0.001 4.001 13 C -0.156 4.156 14 C 0.055 3.945 15 N -0.331 5.331 16 C -0.357 4.357 17 H 0.096 0.904 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.027 3.973 25 C 0.176 3.824 26 F -0.090 7.090 27 C -0.222 4.222 28 H 0.122 0.878 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 0.923 -14.607 -13.045 19.606 hybrid contribution -0.932 0.487 0.430 1.136 sum -0.009 -14.120 -12.616 18.935 Atomic orbital electron populations 1.23200 0.77362 1.04522 1.02066 1.86042 1.22204 1.26386 1.87571 1.18814 0.91332 0.84562 0.91938 1.21255 1.00898 0.91641 1.10720 1.21192 0.92305 0.98338 0.91466 1.19876 0.94258 0.92714 1.13704 1.17352 0.85048 0.82427 0.77275 1.90821 1.17795 1.85286 1.47500 1.49648 1.21697 1.07132 1.58783 1.23006 0.86340 0.96964 0.94464 1.22186 0.96805 0.96667 0.94945 1.22796 1.01010 0.79122 0.97215 1.22471 0.99302 1.00659 0.93124 1.21222 0.87697 0.94527 0.91053 1.44543 1.26774 1.58294 1.03516 1.19040 0.99123 1.24194 0.93371 0.90396 1.24795 0.99031 1.00284 0.96233 1.69967 1.38671 1.43308 1.04889 0.86134 0.82566 0.78943 0.78191 1.21651 1.21704 1.20699 1.21137 0.94421 0.92908 0.88827 1.17187 0.77343 0.92135 0.95697 1.91601 1.27802 1.97003 1.92571 1.20153 0.92515 0.97487 1.12040 0.87776 0.91875 0.92099 0.84027 0.83798 0.89389 0.89859 0.90246 0.89577 0.92081 0.91713 0.93519 0.93787 0.93741 0.95491 0.93938 0.83236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.77 10.48 -18.84 -0.20 -2.96 16 3 C 0.18 1.82 6.69 -39.04 -0.26 1.56 16 4 C -0.23 -2.11 9.01 -39.49 -0.36 -2.47 16 5 C -0.01 -0.16 8.86 -39.22 -0.35 -0.51 16 6 C -0.20 -2.79 5.84 -104.90 -0.61 -3.40 16 7 C 0.59 9.64 7.80 -12.51 -0.10 9.54 16 8 O -0.54 -10.58 16.48 5.27 0.09 -10.49 16 9 N -0.64 -9.41 3.65 -186.99 -0.68 -10.10 16 10 C 0.11 1.57 5.45 -7.33 -0.04 1.53 16 11 C -0.10 -1.64 1.06 -155.22 -0.16 -1.81 16 12 C 0.12 1.70 8.03 -7.47 -0.06 1.64 16 13 C -0.12 -2.11 6.40 -25.61 -0.16 -2.27 16 14 C 0.18 4.13 5.39 -2.84 -0.02 4.12 16 15 N -0.60 -14.37 3.41 -170.54 -0.58 -14.95 16 16 C -0.23 -6.04 10.28 -15.06 -0.15 -6.19 16 17 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 18 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 19 N -0.92 -26.14 10.30 55.49 0.57 -25.57 16 20 Si 0.91 21.30 29.55 -169.99 -5.02 16.27 16 21 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.15 2.83 6.70 -3.22 -0.02 2.81 16 25 C 0.20 2.68 7.24 -38.99 -0.28 2.40 16 26 F -0.11 -1.73 15.84 2.25 0.04 -1.70 16 27 C -0.20 -2.25 9.95 -39.42 -0.39 -2.65 16 28 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.29 7.65 -51.93 -0.40 -0.10 16 30 H 0.06 0.25 7.65 -51.93 -0.40 -0.15 16 31 H 0.14 0.94 6.27 -52.49 -0.33 0.61 16 32 H 0.14 1.40 5.62 -52.48 -0.29 1.11 16 33 H 0.09 1.03 7.78 -51.93 -0.40 0.62 16 34 H 0.08 1.17 7.82 -51.93 -0.41 0.77 16 35 H 0.08 1.14 8.13 -51.93 -0.42 0.72 16 36 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.06 1.06 8.07 -51.93 -0.42 0.64 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.05 1.19 7.38 -51.93 -0.38 0.81 16 40 H 0.04 1.14 7.49 -51.93 -0.39 0.75 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 44 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -32.83 363.67 -8.30 -41.13 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.92 Total: -2.24 kcal Atomic # 6 Polarization: 7.20 SS G_CDS: -2.07 Total: 5.13 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: -0.69 Total: -50.62 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.11 Total: -13.45 kcal Atomic # 9 Polarization: -1.73 SS G_CDS: 0.04 Total: -1.70 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.83 -8.30 -41.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072900721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.181 kcal (2) G-P(sol) polarization free energy of solvation -32.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds