Wall clock time and date at job start Tue Mar 31 2020 17:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00253 * 2 1 4 4 C 1.52996 * 109.47166 * 275.51472 * 3 2 1 5 5 H 1.08989 * 112.96815 * 65.39059 * 4 3 2 6 6 C 1.53949 * 113.76617 * 293.71344 * 4 3 2 7 7 C 1.53949 * 86.28966 * 222.09303 * 6 4 3 8 8 N 1.47582 * 86.11623 * 23.60976 * 7 6 4 9 9 C 1.36937 * 134.49668 * 155.36511 * 8 7 6 10 10 H 1.07997 * 120.00423 * 185.58049 * 9 8 7 11 11 C 1.38814 * 119.99677 * 5.57268 * 9 8 7 12 12 N 1.31621 * 120.00030 * 0.02562 * 11 9 8 13 13 Si 1.86802 * 120.00126 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.46750 * 60.00196 * 13 11 9 15 15 H 1.48498 * 109.47195 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.47093 * 300.00461 * 13 11 9 17 17 C 1.34782 * 120.00223 * 180.02562 * 2 1 3 18 18 O 1.21633 * 120.00037 * 184.55680 * 17 2 1 19 19 C 1.47191 * 119.99478 * 4.55961 * 17 2 1 20 20 C 1.35619 * 123.19604 * 317.96998 * 19 17 2 21 21 S 1.70263 * 110.84571 * 179.78619 * 20 19 17 22 22 C 1.75599 * 92.62612 * 0.25233 * 21 20 19 23 23 C 1.34007 * 110.59743 * 0.02562 * 22 21 20 24 24 C 1.52018 * 123.46102 * 180.02562 * 23 22 21 25 25 C 1.53041 * 108.75231 * 342.85010 * 24 23 22 26 26 C 1.53159 * 109.20049 * 50.67518 * 25 24 23 27 27 C 1.51605 * 125.04705 * 180.02562 * 22 21 20 28 28 H 1.09006 * 109.47075 * 265.65366 * 1 2 3 29 29 H 1.08994 * 109.47404 * 25.64793 * 1 2 3 30 30 H 1.08995 * 109.47259 * 145.65521 * 1 2 3 31 31 H 1.09007 * 109.46579 * 35.51246 * 3 2 1 32 32 H 1.08995 * 109.47189 * 155.50921 * 3 2 1 33 33 H 1.09004 * 113.74482 * 336.43597 * 6 4 3 34 34 H 1.08997 * 113.74130 * 107.64325 * 6 4 3 35 35 H 1.09000 * 113.77064 * 137.90706 * 7 6 4 36 36 H 1.08999 * 113.77081 * 269.19236 * 7 6 4 37 37 H 0.97005 * 119.99988 * 179.97438 * 12 11 9 38 38 H 1.08005 * 124.57506 * 0.05817 * 20 19 17 39 39 H 1.08995 * 109.58496 * 102.62970 * 24 23 22 40 40 H 1.08994 * 109.58778 * 222.92442 * 24 23 22 41 41 H 1.09005 * 109.51344 * 170.58963 * 25 24 23 42 42 H 1.09000 * 109.51644 * 290.70266 * 25 24 23 43 43 H 1.08996 * 109.54584 * 49.49317 * 26 25 24 44 44 H 1.09002 * 109.54123 * 169.75122 * 26 25 24 45 45 H 1.09002 * 109.60083 * 43.61939 * 27 22 21 46 46 H 1.09002 * 109.59694 * 283.15880 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3325 1.7797 -1.4358 5 1 1.3750 2.0413 -1.8859 6 6 3.2163 0.8913 -2.3300 7 6 3.8085 2.2031 -2.8764 8 7 3.3737 2.8120 -1.6043 9 6 3.7750 3.8985 -0.8738 10 1 3.3399 4.0874 0.0964 11 6 4.7412 4.7569 -1.3803 12 7 5.2712 4.5268 -2.5629 13 14 5.2892 6.2386 -0.3835 14 1 5.8576 5.7821 0.9102 15 1 6.3220 6.9902 -1.1409 16 1 4.1231 7.1219 -0.1277 17 6 2.1389 -1.1672 -0.0005 18 8 3.3524 -1.1689 0.0832 19 6 1.4064 -2.4398 -0.1024 20 6 0.2557 -2.6902 0.5702 21 16 -0.3245 -4.2517 0.2182 22 6 1.0171 -4.5945 -0.8616 23 6 1.8495 -3.5463 -0.9268 24 6 3.1089 -3.5277 -1.7780 25 6 3.4677 -4.9663 -2.1571 26 6 2.2314 -5.6568 -2.7406 27 6 1.2151 -5.8926 -1.6193 28 1 -0.3633 -0.0779 1.0248 29 1 -0.3634 0.9263 -0.4448 30 1 -0.3633 -0.8485 -0.5797 31 1 1.6547 2.0016 0.5970 32 1 3.1891 1.1158 0.4260 33 1 3.9320 0.2843 -1.7753 34 1 2.6568 0.3188 -3.0697 35 1 4.8907 2.1771 -3.0038 36 1 3.2865 2.5897 -3.7517 37 1 5.9461 5.1269 -2.9170 38 1 -0.2296 -1.9915 1.2357 39 1 2.9305 -2.9452 -2.6818 40 1 3.9264 -3.0821 -1.2114 41 1 4.2653 -4.9590 -2.9001 42 1 3.8015 -5.5043 -1.2698 43 1 1.7876 -5.0226 -3.5079 44 1 2.5199 -6.6127 -3.1778 45 1 0.2660 -6.2140 -2.0483 46 1 1.5900 -6.6586 -0.9405 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085961821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:00 Heat of formation + Delta-G solvation = 45.820138 kcal Electronic energy + Delta-G solvation = -27074.339405 eV Core-core repulsion = 23478.051363 eV Total energy + Delta-G solvation = -3596.288042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.22725 -38.65292 -37.53166 -35.42160 -34.81218 -32.09375 -30.93220 -29.72229 -28.11718 -27.75693 -26.72859 -24.47376 -23.43398 -23.21837 -22.55048 -21.35900 -19.18282 -18.91445 -18.40255 -17.40683 -16.80135 -16.45424 -15.74952 -15.46304 -14.90456 -14.65464 -14.52056 -14.20967 -13.98698 -13.95562 -13.53874 -13.21554 -13.15867 -13.03320 -12.70003 -12.57616 -12.28114 -12.13804 -11.92517 -11.61487 -11.48816 -11.30913 -11.01250 -10.97910 -10.83633 -10.80054 -10.64848 -10.51837 -10.39840 -9.82875 -9.68864 -9.58790 -9.39863 -8.72961 -8.71217 -8.42194 -8.27349 -6.79160 -5.69934 -3.01601 0.73602 1.38321 1.78921 2.01949 3.03011 3.40046 3.43660 3.47795 3.48945 4.35682 4.51942 4.57938 4.70089 4.77092 4.80705 5.02543 5.08897 5.16723 5.28911 5.33771 5.37460 5.41527 5.44473 5.51846 5.61564 5.63369 5.67325 5.73428 5.74526 5.91008 5.93682 6.00217 6.03100 6.12141 6.17098 6.18368 6.42304 6.47993 6.59913 6.76210 6.82058 6.86170 7.34254 7.52257 7.63481 7.67128 8.05762 8.40306 9.11398 9.78039 10.69362 11.47689 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.002990 C = 0.002736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.336225 B = 9362.168283 C =10231.726976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.602 5.602 3 C 0.116 3.884 4 C 0.128 3.872 5 H 0.040 0.960 6 C -0.158 4.158 7 C 0.166 3.834 8 N -0.599 5.599 9 C -0.224 4.224 10 H 0.077 0.923 11 C -0.007 4.007 12 N -0.920 5.920 13 Si 0.909 3.091 14 H -0.284 1.284 15 H -0.290 1.290 16 H -0.286 1.286 17 C 0.574 3.426 18 O -0.522 6.522 19 C -0.132 4.132 20 C -0.222 4.222 21 S 0.160 5.840 22 C -0.206 4.206 23 C -0.052 4.052 24 C -0.064 4.064 25 C -0.119 4.119 26 C -0.116 4.116 27 C -0.043 4.043 28 H 0.051 0.949 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.041 0.959 35 H 0.065 0.935 36 H 0.025 0.975 37 H 0.253 0.747 38 H 0.172 0.828 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.428 -22.441 2.444 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.335 5.335 3 C -0.007 4.007 4 C 0.020 3.980 5 H 0.058 0.942 6 C -0.196 4.196 7 C 0.040 3.960 8 N -0.326 5.326 9 C -0.351 4.351 10 H 0.095 0.905 11 C -0.203 4.203 12 N -0.567 5.567 13 Si 0.740 3.260 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.213 1.213 17 C 0.360 3.640 18 O -0.399 6.399 19 C -0.150 4.150 20 C -0.359 4.359 21 S 0.429 5.571 22 C -0.322 4.322 23 C -0.063 4.063 24 C -0.103 4.103 25 C -0.157 4.157 26 C -0.155 4.155 27 C -0.082 4.082 28 H 0.070 0.930 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.113 0.887 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.043 0.957 37 H 0.063 0.937 38 H 0.189 0.811 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.088 0.912 45 H 0.094 0.906 46 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.880 -22.922 3.053 26.971 hybrid contribution 1.122 2.111 0.192 2.398 sum -12.758 -20.811 3.245 24.625 Atomic orbital electron populations 1.21976 0.80321 1.03587 1.00983 1.47682 1.06623 1.06287 1.72918 1.21850 0.97877 0.82145 0.98865 1.22499 0.93051 0.89537 0.92886 0.94247 1.23806 0.99442 0.97602 0.98742 1.22093 0.99349 0.86226 0.88296 1.45953 1.34687 1.29472 1.22442 1.18939 1.17885 1.00092 0.98206 0.90476 1.24788 0.99878 0.98882 0.96777 1.69831 1.30682 1.38726 1.17427 0.86248 0.78039 0.82645 0.79114 1.21080 1.21602 1.21275 1.17647 0.86897 0.82695 0.76740 1.90801 1.13235 1.86810 1.49016 1.20155 0.96436 0.96364 1.02084 1.25539 1.00669 1.02849 1.06826 1.82794 1.25071 1.07916 1.41314 1.24624 0.99949 1.01073 1.06559 1.20382 0.97381 0.90658 0.97908 1.20602 0.94083 0.97155 0.98452 1.21572 0.97514 0.95495 1.01082 1.21598 0.95672 1.00975 0.97294 1.20299 0.99957 0.91687 0.96234 0.93023 0.90647 0.90981 0.91417 0.88674 0.89793 0.93997 0.91621 0.95706 0.93663 0.81081 0.90333 0.88691 0.91089 0.91650 0.91351 0.91178 0.90625 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.82 9.05 59.84 0.54 1.37 16 2 N -0.60 -9.26 2.80 -182.94 -0.51 -9.77 16 3 C 0.12 2.16 5.40 -4.04 -0.02 2.14 16 4 C 0.13 2.71 4.57 -66.86 -0.31 2.41 16 5 H 0.04 0.82 8.14 -51.94 -0.42 0.40 16 6 C -0.16 -3.32 7.32 -25.80 -0.19 -3.51 16 7 C 0.17 4.15 7.38 -2.97 -0.02 4.13 16 8 N -0.60 -15.80 3.57 -170.74 -0.61 -16.41 16 9 C -0.22 -6.37 10.51 -15.06 -0.16 -6.53 16 10 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 11 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 12 N -0.92 -28.07 11.53 55.49 0.64 -27.43 16 13 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 C 0.57 9.48 6.81 -12.62 -0.09 9.39 16 18 O -0.52 -10.51 13.84 5.25 0.07 -10.43 16 19 C -0.13 -1.78 5.19 -104.56 -0.54 -2.32 16 20 C -0.22 -2.34 8.53 29.80 0.25 -2.08 16 21 S 0.16 1.40 22.99 -107.50 -2.47 -1.07 16 22 C -0.21 -2.10 6.32 -35.35 -0.22 -2.33 16 23 C -0.05 -0.66 5.94 -102.82 -0.61 -1.27 16 24 C -0.06 -0.79 5.69 -27.21 -0.15 -0.94 16 25 C -0.12 -1.11 5.90 -26.63 -0.16 -1.27 16 26 C -0.12 -0.90 5.93 -26.57 -0.16 -1.05 16 27 C -0.04 -0.33 6.26 -27.36 -0.17 -0.50 16 28 H 0.05 0.46 7.18 -51.93 -0.37 0.09 16 29 H 0.07 0.80 8.04 -51.93 -0.42 0.38 16 30 H 0.07 0.72 5.98 -51.93 -0.31 0.41 16 31 H 0.07 1.19 8.11 -51.93 -0.42 0.76 16 32 H 0.09 2.07 7.21 -51.93 -0.37 1.70 16 33 H 0.08 1.88 6.87 -51.93 -0.36 1.52 16 34 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.80 7.42 -51.93 -0.39 1.42 16 36 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.17 1.49 6.15 -52.48 -0.32 1.17 16 39 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.09 1.40 6.91 -51.93 -0.36 1.04 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.07 0.55 8.11 -51.93 -0.42 0.13 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 373.29 15.07 5.63 5.63 Total: -1.00 -33.54 373.29 -11.47 -45.01 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -7.09 Total: -0.46 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -2.10 Total: -2.66 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.48 Total: -53.61 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.07 Total: -10.43 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Atomic # 16 Polarization: 1.40 SS G_CDS: -2.47 Total: -1.07 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.54 -11.47 -45.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085961821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.831 kcal (2) G-P(sol) polarization free energy of solvation -33.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds