Wall clock time and date at job start Tue Mar 31 2020 18:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 120.00187 * 2 1 4 4 H 1.48502 * 109.46996 * 0.02562 * 3 2 1 5 5 H 1.48499 * 109.46664 * 120.00046 * 3 2 1 6 6 H 1.48490 * 109.47479 * 239.99925 * 3 2 1 7 7 C 1.38817 * 119.99811 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99730 * 155.49053 * 7 2 1 9 9 N 1.36940 * 119.99931 * 335.49820 * 7 2 1 10 10 C 1.46924 * 120.62840 * 331.81335 * 9 7 2 11 11 C 1.52765 * 109.00726 * 233.58467 * 10 9 7 12 12 C 1.53038 * 109.38424 * 305.59230 * 11 10 9 13 13 F 1.39897 * 109.46097 * 301.21908 * 12 11 10 14 14 F 1.39898 * 109.44761 * 181.25123 * 12 11 10 15 15 C 1.53043 * 109.53784 * 61.24001 * 12 11 10 16 16 H 1.08993 * 109.52429 * 58.60461 * 15 12 11 17 17 C 1.52999 * 109.49492 * 178.68498 * 15 12 11 18 18 N 1.46501 * 109.47108 * 184.83315 * 17 15 12 19 19 C 1.34779 * 120.00240 * 179.97438 * 18 17 15 20 20 O 1.21279 * 119.99936 * 0.02562 * 19 18 17 21 21 C 1.50697 * 119.99859 * 180.02562 * 19 18 17 22 22 C 1.53007 * 109.46946 * 180.02562 * 21 19 18 23 23 N 1.46495 * 109.47100 * 180.02562 * 22 21 19 24 24 C 1.34778 * 119.99909 * 180.02562 * 23 22 21 25 25 N 1.34776 * 120.00013 * 179.97438 * 24 23 22 26 26 O 1.21594 * 120.00038 * 359.97438 * 24 23 22 27 27 C 1.46924 * 120.62954 * 152.09633 * 9 7 2 28 28 H 0.97008 * 119.99855 * 174.23671 * 1 2 3 29 29 H 1.08997 * 109.58881 * 353.41746 * 10 9 7 30 30 H 1.08995 * 109.58530 * 113.84827 * 10 9 7 31 31 H 1.08999 * 109.56541 * 185.55449 * 11 10 9 32 32 H 1.09002 * 109.35717 * 65.49820 * 11 10 9 33 33 H 1.09000 * 109.47740 * 304.83636 * 17 15 12 34 34 H 1.09006 * 109.47612 * 64.83773 * 17 15 12 35 35 H 0.96998 * 120.00265 * 0.02562 * 18 17 15 36 36 H 1.09001 * 109.46973 * 299.99745 * 21 19 18 37 37 H 1.08991 * 109.47282 * 60.00407 * 21 19 18 38 38 H 1.09002 * 109.47094 * 300.00220 * 22 21 19 39 39 H 1.09004 * 109.47158 * 59.99657 * 22 21 19 40 40 H 0.96996 * 120.00368 * 359.97438 * 23 22 21 41 41 H 0.96996 * 120.00264 * 359.97438 * 25 24 23 42 42 H 0.97005 * 119.99756 * 179.97438 * 25 24 23 43 43 H 1.09002 * 109.58713 * 246.15232 * 27 9 7 44 44 H 1.09002 * 109.58725 * 6.57889 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 0.0006 5 1 3.1039 1.6962 1.2125 6 1 3.1040 1.6964 -1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0172 -1.2442 -0.3886 9 7 1.4180 -2.3349 0.4908 10 6 0.3871 -2.2483 1.5341 11 6 0.7853 -3.1480 2.7028 12 6 1.0413 -4.5662 2.1878 13 9 -0.1141 -5.0521 1.5666 14 9 1.3783 -5.3977 3.2612 15 6 2.1920 -4.5444 1.1790 16 1 3.0865 -4.1430 1.6552 17 6 2.4688 -5.9672 0.6894 18 7 3.6429 -5.9624 -0.1868 19 6 4.0766 -7.1130 -0.7388 20 8 3.4946 -8.1522 -0.5106 21 6 5.2848 -7.1080 -1.6396 22 6 5.5615 -8.5309 -2.1293 23 7 6.7363 -8.5262 -3.0045 24 6 7.1695 -9.6766 -3.5572 25 7 8.2500 -9.6723 -4.3628 26 8 6.5854 -10.7184 -3.3291 27 6 1.8057 -3.6603 -0.0110 28 1 -0.4850 -0.8359 -0.0844 29 1 0.3030 -1.2181 1.8801 30 1 -0.5696 -2.5799 1.1309 31 1 -0.0186 -3.1677 3.4386 32 1 1.6928 -2.7594 3.1650 33 1 2.6566 -6.6159 1.5450 34 1 1.6046 -6.3360 0.1367 35 1 4.1087 -5.1314 -0.3691 36 1 5.0971 -6.4596 -2.4954 37 1 6.1486 -6.7392 -1.0867 38 1 5.7489 -9.1797 -1.2737 39 1 4.6975 -8.8994 -2.6823 40 1 7.2021 -7.6952 -3.1868 41 1 8.7157 -8.8412 -4.5451 42 1 8.5619 -10.5003 -4.7603 43 1 0.9669 -4.1094 -0.5429 44 1 2.6572 -3.5614 -0.6843 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569740421.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:45 Heat of formation + Delta-G solvation = -159.762171 kcal Electronic energy + Delta-G solvation = -29300.391163 eV Core-core repulsion = 24730.498753 eV Total energy + Delta-G solvation = -4569.892409 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.160 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.67457 -46.62582 -40.25553 -39.68872 -37.65730 -35.57023 -35.09118 -33.96909 -32.95138 -31.45723 -30.57726 -29.98663 -26.05104 -25.11967 -23.98913 -22.57797 -21.49506 -21.44337 -20.57004 -19.64927 -18.67795 -17.79819 -17.65161 -17.06489 -16.92187 -16.41283 -16.33796 -15.83295 -15.44872 -15.35640 -14.93455 -14.83678 -14.38994 -14.02260 -13.92730 -13.67180 -13.63109 -13.39322 -13.32491 -13.02774 -12.93609 -12.28224 -12.18164 -12.11357 -11.87148 -11.80171 -11.65336 -10.99795 -10.86240 -10.81627 -10.64526 -10.56144 -10.15913 -10.12158 -10.04865 -9.83177 -9.53267 -9.35365 -9.13180 -8.57672 -7.16603 -6.26445 -3.46317 2.44029 2.50751 2.92170 3.11671 3.37696 3.41101 3.59438 4.05343 4.13964 4.37016 4.40390 4.45393 4.54914 4.70890 4.72626 4.75760 5.00252 5.10800 5.16996 5.31574 5.36514 5.50345 5.59457 5.69337 5.74801 5.86280 5.96105 6.06186 6.09650 6.15628 6.23015 6.28046 6.34629 6.48758 6.55857 6.71287 6.90825 7.35930 7.60358 7.76496 8.08763 8.30769 8.35758 8.86298 9.61490 10.02726 11.02775 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.012755 B = 0.002606 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.773578 B =10739.883016 C =12521.862513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.019 4.019 3 Si 1.066 2.934 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.359 4.359 8 H 0.060 0.940 9 N -0.597 5.597 10 C 0.149 3.851 11 C -0.174 4.174 12 C 0.301 3.699 13 F -0.199 7.199 14 F -0.211 7.211 15 C -0.155 4.155 16 H 0.103 0.897 17 C 0.125 3.875 18 N -0.722 5.722 19 C 0.517 3.483 20 O -0.537 6.537 21 C -0.154 4.154 22 C 0.152 3.848 23 N -0.746 5.746 24 C 0.704 3.296 25 N -0.869 5.869 26 O -0.591 6.591 27 C 0.156 3.844 28 H 0.271 0.729 29 H 0.093 0.907 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.404 0.596 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.396 0.604 41 H 0.396 0.604 42 H 0.415 0.585 43 H 0.031 0.969 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.317 -9.869 -3.155 17.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.223 4.223 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.488 4.488 8 H 0.077 0.923 9 N -0.320 5.320 10 C 0.023 3.977 11 C -0.214 4.214 12 C 0.264 3.736 13 F -0.180 7.180 14 F -0.192 7.192 15 C -0.177 4.177 16 H 0.121 0.879 17 C 0.001 3.999 18 N -0.374 5.374 19 C 0.302 3.698 20 O -0.414 6.414 21 C -0.194 4.194 22 C 0.028 3.972 23 N -0.403 5.403 24 C 0.402 3.598 25 N -0.437 5.437 26 O -0.468 6.468 27 C 0.029 3.971 28 H 0.082 0.918 29 H 0.111 0.889 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.239 0.761 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.230 0.770 41 H 0.224 0.776 42 H 0.246 0.754 43 H 0.049 0.951 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.051 -9.766 -2.618 16.509 hybrid contribution 0.977 -0.883 -0.405 1.378 sum 14.028 -10.649 -3.023 17.870 Atomic orbital electron populations 1.70799 1.06643 1.30570 1.46858 1.25931 0.96501 1.01630 0.98189 0.83512 0.74816 0.75924 0.76241 1.20983 1.21923 1.21868 1.19925 0.97372 0.87998 1.43462 0.92268 1.44148 1.45830 1.01260 1.40772 1.20919 0.91177 0.99182 0.86432 1.23066 1.04156 0.92271 1.01858 1.20981 0.82575 0.88395 0.81636 1.92971 1.52102 1.89684 1.83234 1.92967 1.92664 1.75226 1.58315 1.22962 0.98485 0.96751 0.99456 0.87915 1.21326 0.88380 0.96036 0.94208 1.45932 1.31450 1.10392 1.49652 1.20258 0.85310 0.83616 0.80587 1.90761 1.58046 1.31405 1.61145 1.21800 0.97860 0.99139 1.00626 1.20894 0.87225 0.95160 0.93962 1.45066 1.33400 1.09011 1.52850 1.15942 0.80805 0.84073 0.78972 1.42990 1.32438 1.14267 1.54032 1.91010 1.59133 1.30905 1.65767 1.20905 0.98732 0.86063 0.91445 0.91800 0.88884 0.95128 0.90237 0.89215 0.90881 0.90602 0.76060 0.87898 0.88056 0.90518 0.90448 0.77013 0.77606 0.75352 0.95082 0.91442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.46 12.42 55.49 0.69 -24.78 16 2 C -0.02 -0.51 4.70 -17.43 -0.08 -0.59 16 3 Si 1.07 23.18 29.98 -169.99 -5.10 18.08 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.11 7.11 56.52 0.40 -5.70 16 6 H -0.29 -6.07 7.11 56.52 0.40 -5.66 16 7 C -0.36 -8.97 9.49 -15.06 -0.14 -9.11 16 8 H 0.06 1.45 7.94 -52.49 -0.42 1.03 16 9 N -0.60 -13.33 2.85 -172.58 -0.49 -13.82 16 10 C 0.15 3.19 4.46 -3.93 -0.02 3.17 16 11 C -0.17 -3.03 5.60 -26.83 -0.15 -3.18 16 12 C 0.30 5.10 1.63 -26.69 -0.04 5.05 16 13 F -0.20 -3.67 15.73 2.25 0.04 -3.63 16 14 F -0.21 -3.51 16.41 2.25 0.04 -3.48 16 15 C -0.16 -2.40 2.03 -90.50 -0.18 -2.58 16 16 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 17 C 0.12 1.77 4.83 -4.04 -0.02 1.76 16 18 N -0.72 -8.32 5.33 -60.29 -0.32 -8.65 16 19 C 0.52 6.19 7.83 -10.99 -0.09 6.10 16 20 O -0.54 -8.79 15.98 5.56 0.09 -8.70 16 21 C -0.15 -1.14 5.81 -27.88 -0.16 -1.31 16 22 C 0.15 1.49 4.96 -4.04 -0.02 1.47 16 23 N -0.75 -5.57 5.56 -65.22 -0.36 -5.93 16 24 C 0.70 7.02 8.84 -86.92 -0.77 6.25 16 25 N -0.87 -4.50 8.88 27.64 0.25 -4.26 16 26 O -0.59 -9.11 17.18 5.28 0.09 -9.02 16 27 C 0.16 2.84 5.40 -3.71 -0.02 2.82 16 28 H 0.27 7.67 6.69 -40.82 -0.27 7.40 16 29 H 0.09 2.21 6.32 -51.93 -0.33 1.89 16 30 H 0.03 0.69 7.64 -51.93 -0.40 0.29 16 31 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.07 1.09 7.63 -51.93 -0.40 0.69 16 34 H 0.08 1.20 7.97 -51.93 -0.41 0.78 16 35 H 0.40 3.80 7.70 -40.82 -0.31 3.48 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.91 8.10 -51.93 -0.42 0.48 16 39 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 40 H 0.40 1.50 8.49 -40.82 -0.35 1.16 16 41 H 0.40 0.72 8.84 -40.82 -0.36 0.36 16 42 H 0.41 1.85 8.93 -40.82 -0.36 1.49 16 43 H 0.03 0.61 7.92 -51.93 -0.41 0.20 16 44 H 0.07 1.14 7.13 -51.93 -0.37 0.77 16 LS Contribution 367.33 15.07 5.54 5.54 Total: -1.00 -34.96 367.33 -7.39 -42.35 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -6.14 Total: 6.44 kcal Atomic # 6 Polarization: 11.54 SS G_CDS: -1.70 Total: 9.85 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -0.24 Total: -57.43 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.18 Total: -17.72 kcal Atomic # 9 Polarization: -7.18 SS G_CDS: 0.07 Total: -7.11 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -5.10 Total: 18.08 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.96 -7.39 -42.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569740421.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.412 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds