Wall clock time and date at job start Tue Mar 31 2020 17:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99813 * 2 1 4 4 C 1.52996 * 109.47316 * 66.04858 * 3 2 1 5 5 N 1.46505 * 109.47287 * 180.02562 * 4 3 2 6 6 C 1.34769 * 120.00276 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99770 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00103 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46849 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99813 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99727 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00240 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99580 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00341 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46681 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47195 * 119.99964 * 14 12 10 17 17 H 1.48500 * 109.47433 * 240.00364 * 14 12 10 18 18 C 1.46901 * 111.00177 * 236.04165 * 2 1 3 19 19 H 1.08993 * 110.27001 * 179.57461 * 18 2 1 20 20 C 1.54346 * 110.30403 * 301.75832 * 18 2 1 21 21 C 1.54340 * 102.39589 * 92.57833 * 20 18 2 22 22 C 1.51376 * 105.23903 * 26.11297 * 21 20 18 23 23 C 1.38495 * 130.38402 * 162.33451 * 22 21 20 24 24 C 1.38103 * 120.21117 * 180.38548 * 23 22 21 25 25 C 1.38254 * 119.93614 * 0.28342 * 24 23 22 26 26 C 1.38106 * 119.93398 * 359.97438 * 25 24 23 27 27 C 1.38218 * 109.75712 * 343.22389 * 22 21 20 28 28 H 1.09005 * 109.46684 * 183.95674 * 1 2 3 29 29 H 1.08999 * 109.47104 * 303.95238 * 1 2 3 30 30 H 1.08994 * 109.47198 * 63.95693 * 1 2 3 31 31 H 1.09001 * 109.46839 * 186.04792 * 3 2 1 32 32 H 1.09004 * 109.47139 * 306.04403 * 3 2 1 33 33 H 1.09002 * 109.46882 * 299.99266 * 4 3 2 34 34 H 1.08995 * 109.47342 * 59.99860 * 4 3 2 35 35 H 0.97003 * 119.99305 * 359.97438 * 5 4 3 36 36 H 1.08994 * 109.47221 * 299.99886 * 8 6 5 37 37 H 1.08997 * 109.46643 * 60.00079 * 8 6 5 38 38 H 0.97008 * 119.99381 * 179.97438 * 13 12 10 39 39 H 1.08998 * 110.81981 * 210.80806 * 20 18 2 40 40 H 1.09002 * 110.81791 * 334.34777 * 20 18 2 41 41 H 1.09007 * 110.30083 * 145.26988 * 21 20 18 42 42 H 1.09003 * 110.30338 * 267.32077 * 21 20 18 43 43 H 1.08002 * 119.89840 * 0.66749 * 23 22 21 44 44 H 1.07997 * 120.03401 * 180.30507 * 24 23 22 45 45 H 1.08003 * 120.03171 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.89016 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1560 3.4254 1.3180 6 6 1.9546 4.2245 2.3843 7 8 1.3387 3.8114 3.3440 8 6 2.4946 5.6315 2.3843 9 16 2.0626 6.4435 3.9431 10 6 2.7961 8.0236 3.6785 11 1 3.3159 8.2297 2.7545 12 6 2.7051 9.0037 4.6571 13 7 2.0711 8.7526 5.7830 14 14 3.4821 10.6790 4.3763 15 1 4.1298 10.7065 3.0402 16 1 2.4329 11.7281 4.4389 17 1 4.5008 10.9345 5.4261 18 6 1.9955 -0.7661 -1.1375 19 1 3.0853 -0.7520 -1.1302 20 6 1.4762 -2.2188 -1.0912 21 6 0.2037 -2.1436 -1.9614 22 6 0.4381 -0.9875 -2.9101 23 6 -0.1915 -0.6611 -4.0996 24 6 0.2020 0.4556 -4.8105 25 6 1.2317 1.2474 -4.3370 26 6 1.8643 0.9205 -3.1537 27 6 1.4716 -0.1994 -2.4397 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9273 -0.8310 33 1 0.5472 2.0845 1.4264 34 1 2.0658 1.5016 2.1491 35 1 2.6482 3.7559 0.5502 36 1 3.5788 5.6045 2.2765 37 1 2.0605 6.1871 1.5530 38 1 2.0078 9.4375 6.4671 39 1 2.2034 -2.9042 -1.5265 40 1 1.2306 -2.5100 -0.0699 41 1 0.0703 -3.0718 -2.5172 42 1 -0.6693 -1.9476 -1.3388 43 1 -0.9960 -1.2791 -4.4702 44 1 -0.2943 0.7103 -5.7353 45 1 1.5410 2.1209 -4.8919 46 1 2.6688 1.5393 -2.7846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663142316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:47 Heat of formation + Delta-G solvation = -2.091675 kcal Electronic energy + Delta-G solvation = -25444.476620 eV Core-core repulsion = 21846.110966 eV Total energy + Delta-G solvation = -3598.365654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.16370 -39.14753 -37.67966 -35.46791 -33.79503 -32.41864 -31.53657 -30.16841 -29.34580 -28.09221 -27.87477 -25.50003 -24.74167 -23.06013 -21.98766 -21.09656 -20.59605 -20.11055 -17.81783 -17.22517 -16.75739 -16.20821 -15.88782 -15.73566 -15.40567 -15.38295 -14.79797 -14.71388 -14.50213 -14.11604 -13.73718 -13.65490 -13.58918 -13.14427 -13.06610 -12.72805 -12.54117 -12.31178 -12.18319 -11.95722 -11.78304 -11.77811 -11.36286 -11.29661 -11.22355 -11.06792 -11.02936 -11.00833 -10.74667 -9.79664 -9.39786 -9.21660 -9.06854 -8.96320 -8.84102 -8.69196 -8.21590 -6.48617 -6.20823 -3.91097 0.94658 1.00861 2.96641 3.13236 3.22158 3.25412 3.30922 3.36968 3.56285 3.91862 3.98073 4.20954 4.21239 4.57833 4.61965 4.65455 4.68515 4.73286 4.86344 4.89856 5.10909 5.14367 5.16062 5.18915 5.21331 5.26153 5.30566 5.34400 5.44287 5.53760 5.60769 5.61235 5.66805 5.74181 5.80825 5.85454 5.92444 5.96989 6.07691 6.14242 6.15355 6.23462 6.56690 6.61772 6.68666 6.74324 7.60783 7.72653 8.36393 8.64302 9.24587 10.86657 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.001955 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.701672 B =14321.491252 C =15136.218666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 N -0.517 5.517 3 C 0.042 3.958 4 C 0.125 3.875 5 N -0.739 5.739 6 C 0.532 3.468 7 O -0.516 6.516 8 C -0.153 4.153 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.072 3.928 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.122 3.878 19 H 0.093 0.907 20 C -0.113 4.113 21 C -0.091 4.091 22 C -0.086 4.086 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.098 4.098 27 C -0.131 4.131 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.045 0.955 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.396 0.604 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.119 0.881 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 -22.725 -22.375 31.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 N -0.239 5.239 3 C -0.087 4.087 4 C 0.000 4.000 5 N -0.394 5.394 6 C 0.318 3.682 7 O -0.390 6.390 8 C -0.303 4.303 9 S 0.166 5.834 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.137 4.137 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C 0.014 3.986 19 H 0.111 0.889 20 C -0.151 4.151 21 C -0.128 4.128 22 C -0.086 4.086 23 C -0.130 4.130 24 C -0.133 4.133 25 C -0.141 4.141 26 C -0.116 4.116 27 C -0.133 4.133 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.050 0.950 31 H 0.098 0.902 32 H 0.063 0.937 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.230 0.770 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.094 0.906 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.525 -23.597 -20.113 31.108 hybrid contribution 1.124 2.260 -2.595 3.620 sum -1.401 -21.336 -22.707 31.190 Atomic orbital electron populations 1.22711 0.87230 1.02736 1.01202 1.62298 1.08495 1.13108 1.39979 1.22304 1.00640 0.88779 0.96947 1.21189 0.99399 0.82088 0.97289 1.45913 1.59522 1.13684 1.20294 1.20281 0.79252 0.86824 0.81821 1.90707 1.39488 1.75165 1.33680 1.23524 1.03935 0.95031 1.07847 1.85413 1.73252 1.10967 1.13774 1.22909 1.40931 0.98434 1.05989 0.90890 1.25001 0.95192 0.99007 0.94473 1.70035 1.39772 1.34311 1.06150 0.86111 0.78867 0.82136 0.78342 1.19636 1.20582 1.20560 1.21288 0.99708 0.93161 0.84476 0.88921 1.22348 0.96704 0.94910 1.01088 1.21307 0.99187 0.96141 0.96176 1.20610 0.96036 0.97053 0.94932 1.20646 1.00228 0.97709 0.94458 1.21077 0.97373 0.94969 0.99869 1.21088 0.96753 0.99926 0.96368 1.20715 0.99897 0.96283 0.94740 1.21291 0.98127 0.96184 0.97675 0.90604 0.90839 0.94952 0.90160 0.93672 0.91686 0.90726 0.77024 0.89208 0.89285 0.92248 0.90252 0.89125 0.90636 0.89648 0.86327 0.85914 0.85845 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 7.90 60.07 0.47 0.55 16 2 N -0.52 -4.54 4.76 -235.03 -1.12 -5.66 16 3 C 0.04 0.38 4.48 -3.83 -0.02 0.36 16 4 C 0.12 1.53 5.61 -4.04 -0.02 1.51 16 5 N -0.74 -10.06 5.56 -60.29 -0.33 -10.39 16 6 C 0.53 10.12 7.85 -10.99 -0.09 10.04 16 7 O -0.52 -12.00 15.86 5.55 0.09 -11.91 16 8 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.88 16 10 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 11 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 12 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 14 Si 0.92 21.51 29.55 -169.99 -5.02 16.48 16 15 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 C 0.12 0.93 3.14 -67.83 -0.21 0.72 16 19 H 0.09 0.68 8.07 -51.93 -0.42 0.26 16 20 C -0.11 -0.69 6.13 -25.32 -0.16 -0.85 16 21 C -0.09 -0.56 5.96 -26.85 -0.16 -0.72 16 22 C -0.09 -0.67 5.30 -104.20 -0.55 -1.23 16 23 C -0.11 -0.85 10.04 -39.54 -0.40 -1.25 16 24 C -0.11 -0.85 10.05 -39.63 -0.40 -1.25 16 25 C -0.12 -0.96 10.05 -39.62 -0.40 -1.35 16 26 C -0.10 -0.80 8.69 -39.54 -0.34 -1.15 16 27 C -0.13 -1.08 4.11 -104.20 -0.43 -1.51 16 28 H 0.08 0.56 5.09 -51.93 -0.26 0.30 16 29 H 0.07 0.71 6.30 -51.93 -0.33 0.38 16 30 H 0.03 0.31 6.56 -51.93 -0.34 -0.03 16 31 H 0.08 0.66 8.03 -51.93 -0.42 0.25 16 32 H 0.05 0.42 6.58 -51.93 -0.34 0.08 16 33 H 0.06 0.87 6.47 -51.93 -0.34 0.54 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.40 4.14 8.47 -40.82 -0.35 3.80 16 36 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 37 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 0.55 7.73 -51.93 -0.40 0.15 16 41 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 42 H 0.09 0.51 6.04 -51.93 -0.31 0.19 16 43 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 46 H 0.12 0.85 7.85 -52.49 -0.41 0.44 16 LS Contribution 379.48 15.07 5.72 5.72 Total: -1.00 -34.82 379.48 -11.27 -46.09 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.85 Total: 1.17 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: -2.28 Total: -12.04 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: -0.72 Total: -41.63 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.82 -11.27 -46.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663142316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.001 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds