Wall clock time and date at job start Tue Mar 31 2020 17:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99813 * 2 1 4 4 C 1.52996 * 109.47316 * 66.04858 * 3 2 1 5 5 N 1.46505 * 109.47287 * 180.02562 * 4 3 2 6 6 C 1.34769 * 120.00276 * 179.97438 * 5 4 3 7 7 O 1.21284 * 119.99770 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00103 * 179.97438 * 6 5 4 9 9 S 1.81000 * 109.46849 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99813 * 179.97438 * 9 8 6 11 11 H 1.08005 * 119.99727 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00240 * 179.97438 * 10 9 8 13 13 N 1.31632 * 119.99580 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00341 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46681 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47195 * 119.99964 * 14 12 10 17 17 H 1.48500 * 109.47433 * 240.00364 * 14 12 10 18 18 C 1.46901 * 111.00177 * 236.04165 * 2 1 3 19 19 H 1.08993 * 110.27001 * 179.57461 * 18 2 1 20 20 C 1.54346 * 110.30403 * 301.75832 * 18 2 1 21 21 C 1.54340 * 102.39589 * 92.57833 * 20 18 2 22 22 C 1.51376 * 105.23903 * 26.11297 * 21 20 18 23 23 C 1.38495 * 130.38402 * 162.33451 * 22 21 20 24 24 C 1.38103 * 120.21117 * 180.38548 * 23 22 21 25 25 C 1.38254 * 119.93614 * 0.28342 * 24 23 22 26 26 C 1.38106 * 119.93398 * 359.97438 * 25 24 23 27 27 C 1.38218 * 109.75712 * 343.22389 * 22 21 20 28 28 H 1.09005 * 109.46684 * 183.95674 * 1 2 3 29 29 H 1.08999 * 109.47104 * 303.95238 * 1 2 3 30 30 H 1.08994 * 109.47198 * 63.95693 * 1 2 3 31 31 H 1.09001 * 109.46839 * 186.04792 * 3 2 1 32 32 H 1.09004 * 109.47139 * 306.04403 * 3 2 1 33 33 H 1.09002 * 109.46882 * 299.99266 * 4 3 2 34 34 H 1.08995 * 109.47342 * 59.99860 * 4 3 2 35 35 H 0.97003 * 119.99305 * 359.97438 * 5 4 3 36 36 H 1.08994 * 109.47221 * 299.99886 * 8 6 5 37 37 H 1.08997 * 109.46643 * 60.00079 * 8 6 5 38 38 H 0.97008 * 119.99381 * 179.97438 * 13 12 10 39 39 H 1.08998 * 110.81981 * 210.80806 * 20 18 2 40 40 H 1.09002 * 110.81791 * 334.34777 * 20 18 2 41 41 H 1.09007 * 110.30083 * 145.26988 * 21 20 18 42 42 H 1.09003 * 110.30338 * 267.32077 * 21 20 18 43 43 H 1.08002 * 119.89840 * 0.66749 * 23 22 21 44 44 H 1.07997 * 120.03401 * 180.30507 * 24 23 22 45 45 H 1.08003 * 120.03171 * 179.97438 * 25 24 23 46 46 H 1.08000 * 119.89016 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3182 5 7 2.1560 3.4254 1.3180 6 6 1.9546 4.2245 2.3843 7 8 1.3387 3.8114 3.3440 8 6 2.4946 5.6315 2.3843 9 16 2.0626 6.4435 3.9431 10 6 2.7961 8.0236 3.6785 11 1 3.3159 8.2297 2.7545 12 6 2.7051 9.0037 4.6571 13 7 2.0711 8.7526 5.7830 14 14 3.4821 10.6790 4.3763 15 1 4.1298 10.7065 3.0402 16 1 2.4329 11.7281 4.4389 17 1 4.5008 10.9345 5.4261 18 6 1.9955 -0.7661 -1.1375 19 1 3.0853 -0.7520 -1.1302 20 6 1.4762 -2.2188 -1.0912 21 6 0.2037 -2.1436 -1.9614 22 6 0.4381 -0.9875 -2.9101 23 6 -0.1915 -0.6611 -4.0996 24 6 0.2020 0.4556 -4.8105 25 6 1.2317 1.2474 -4.3370 26 6 1.8643 0.9205 -3.1537 27 6 1.4716 -0.1994 -2.4397 28 1 -0.3633 -1.0253 0.0709 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4512 -0.9233 31 1 3.0797 1.3444 -0.1083 32 1 1.5611 1.9273 -0.8310 33 1 0.5472 2.0845 1.4264 34 1 2.0658 1.5016 2.1491 35 1 2.6482 3.7559 0.5502 36 1 3.5788 5.6045 2.2765 37 1 2.0605 6.1871 1.5530 38 1 2.0078 9.4375 6.4671 39 1 2.2034 -2.9042 -1.5265 40 1 1.2306 -2.5100 -0.0699 41 1 0.0703 -3.0718 -2.5172 42 1 -0.6693 -1.9476 -1.3388 43 1 -0.9960 -1.2791 -4.4702 44 1 -0.2943 0.7103 -5.7353 45 1 1.5410 2.1209 -4.8919 46 1 2.6688 1.5393 -2.7846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663142316.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:47 Heat of formation + Delta-G solvation = -25.258623 kcal Electronic energy + Delta-G solvation = -25445.481214 eV Core-core repulsion = 21846.110966 eV Total energy + Delta-G solvation = -3599.370248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.74148 -40.59609 -38.37533 -36.39356 -34.78775 -34.58018 -32.16656 -31.46601 -29.98655 -28.97461 -28.68242 -27.64963 -25.55994 -23.59903 -22.77039 -21.89801 -21.66644 -20.88270 -19.82163 -18.01155 -17.72345 -17.40141 -16.92111 -16.87880 -16.77775 -16.15306 -16.07759 -15.81258 -15.61098 -15.27007 -14.83978 -14.62777 -14.47885 -14.19930 -14.16436 -13.75051 -13.54881 -13.31887 -13.15961 -12.92237 -12.87630 -12.83277 -12.59659 -12.49820 -12.33655 -12.18881 -11.84733 -11.75796 -11.72502 -11.64537 -11.15845 -10.99700 -10.27205 -10.13746 -9.78119 -9.53044 -9.36666 -8.66913 -8.34726 -6.12846 0.38676 0.45103 1.26419 1.41684 1.46741 1.58034 1.60160 2.16568 2.27451 2.78196 2.99478 3.07007 3.33650 3.41894 3.65392 3.81288 3.97546 4.04946 4.08231 4.15154 4.15963 4.24803 4.30342 4.34737 4.42969 4.50664 4.51506 4.56820 4.63049 4.70287 4.74556 4.86767 4.91166 4.94201 5.01415 5.09610 5.14391 5.20691 5.31602 5.38695 5.42345 5.52440 5.59545 5.67265 5.98408 6.02808 6.08870 6.20247 6.48483 7.06635 7.22932 8.74784 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.022346 B = 0.001955 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.701672 B =14321.491252 C =15136.218666 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.522 5.522 3 C 0.054 3.946 4 C 0.128 3.872 5 N -0.712 5.712 6 C 0.534 3.466 7 O -0.566 6.566 8 C -0.128 4.128 9 S -0.153 6.153 10 C -0.544 4.544 11 H 0.083 0.917 12 C 0.011 3.989 13 N -0.912 5.912 14 Si 1.000 3.000 15 H -0.256 1.256 16 H -0.274 1.274 17 H -0.274 1.274 18 C 0.122 3.878 19 H 0.097 0.903 20 C -0.109 4.109 21 C -0.089 4.089 22 C -0.096 4.096 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.135 4.135 26 C -0.111 4.111 27 C -0.142 4.142 28 H 0.089 0.911 29 H 0.060 0.940 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.416 0.584 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.271 0.729 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.467 -22.898 -24.837 33.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.244 5.244 3 C -0.075 4.075 4 C 0.004 3.996 5 N -0.366 5.366 6 C 0.320 3.680 7 O -0.444 6.444 8 C -0.279 4.279 9 S 0.074 5.926 10 C -0.692 4.692 11 H 0.102 0.898 12 C -0.193 4.193 13 N -0.548 5.548 14 Si 0.822 3.178 15 H -0.180 1.180 16 H -0.200 1.200 17 H -0.199 1.199 18 C 0.014 3.986 19 H 0.115 0.885 20 C -0.147 4.147 21 C -0.126 4.126 22 C -0.097 4.097 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.153 4.153 26 C -0.130 4.130 27 C -0.144 4.144 28 H 0.107 0.893 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.114 0.886 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.253 0.747 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.150 0.850 44 H 0.157 0.843 45 H 0.154 0.846 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.381 -23.798 -22.640 32.876 hybrid contribution 0.754 2.188 -1.934 3.016 sum -0.627 -21.610 -24.574 32.730 Atomic orbital electron populations 1.22662 0.87348 1.03283 1.00118 1.62298 1.08419 1.12771 1.40928 1.22168 1.01553 0.88959 0.94790 1.21224 0.98504 0.81043 0.98805 1.45618 1.58149 1.13603 1.19249 1.20075 0.78864 0.86736 0.82360 1.90697 1.41932 1.75916 1.35860 1.23359 1.05382 0.95347 1.03842 1.85611 1.74373 1.12737 1.19908 1.23233 1.40919 0.98530 1.06525 0.89841 1.26154 0.95551 1.03650 0.93975 1.70199 1.41327 1.35946 1.07338 0.84885 0.77884 0.76114 0.78928 1.17977 1.19965 1.19922 1.21356 0.99893 0.93677 0.83719 0.88526 1.22357 0.96936 0.94127 1.01243 1.21322 0.99157 0.96138 0.95969 1.20877 0.95968 0.97553 0.95280 1.20918 1.00677 0.98070 0.94550 1.21365 0.97339 0.94857 1.00512 1.21340 0.96928 1.00537 0.96519 1.20920 1.00342 0.96582 0.95114 1.21405 0.98538 0.96480 0.97990 0.89276 0.92172 0.95730 0.88624 0.93334 0.92896 0.92041 0.74686 0.87005 0.87165 0.92005 0.89151 0.89052 0.89421 0.89561 0.84958 0.84298 0.84592 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.23 7.90 127.69 1.01 1.24 16 2 N -0.52 -8.47 4.76 -897.50 -4.27 -12.74 16 3 C 0.05 0.89 4.48 86.30 0.39 1.28 16 4 C 0.13 3.05 5.61 86.38 0.48 3.53 16 5 N -0.71 -18.25 5.56 -463.06 -2.57 -20.82 16 6 C 0.53 20.03 7.85 87.66 0.69 20.72 16 7 O -0.57 -26.90 15.86 -3.04 -0.05 -26.94 16 8 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 9 S -0.15 -8.60 20.57 -56.49 -1.16 -9.76 16 10 C -0.54 -31.18 9.50 67.95 0.65 -30.53 16 11 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 12 C 0.01 0.65 5.49 84.86 0.47 1.11 16 13 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 14 Si 1.00 43.72 29.55 68.60 2.03 45.75 16 15 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 18 C 0.12 1.64 3.14 44.84 0.14 1.78 16 19 H 0.10 1.23 8.07 -2.39 -0.02 1.21 16 20 C -0.11 -1.13 6.13 31.51 0.19 -0.94 16 21 C -0.09 -0.94 5.96 30.52 0.18 -0.76 16 22 C -0.10 -1.37 5.30 -19.59 -0.10 -1.48 16 23 C -0.12 -1.71 10.04 22.30 0.22 -1.48 16 24 C -0.12 -1.64 10.05 22.24 0.22 -1.42 16 25 C -0.14 -1.91 10.05 22.24 0.22 -1.68 16 26 C -0.11 -1.66 8.69 22.30 0.19 -1.47 16 27 C -0.14 -2.13 4.11 -19.59 -0.08 -2.21 16 28 H 0.09 1.22 5.09 -2.38 -0.01 1.21 16 29 H 0.06 1.16 6.30 -2.39 -0.02 1.14 16 30 H 0.02 0.45 6.56 -2.39 -0.02 0.43 16 31 H 0.10 1.33 8.03 -2.39 -0.02 1.31 16 32 H 0.05 0.80 6.58 -2.38 -0.02 0.79 16 33 H 0.05 1.42 6.47 -2.39 -0.02 1.41 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.42 7.53 8.47 -92.71 -0.79 6.74 16 36 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 37 H 0.11 3.92 8.14 -2.40 -0.02 3.90 16 38 H 0.27 15.48 8.31 -92.70 -0.77 14.71 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.09 0.95 7.73 -2.39 -0.02 0.93 16 41 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.09 0.89 6.04 -2.39 -0.01 0.87 16 43 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 44 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 45 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 46 H 0.13 1.58 7.85 -2.91 -0.02 1.55 16 Total: -1.00 -77.23 379.48 -0.22 -77.45 By element: Atomic # 1 Polarization: 19.86 SS G_CDS: 0.21 Total: 20.06 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 5.31 Total: -16.95 kcal Atomic # 7 Polarization: -83.05 SS G_CDS: -6.56 Total: -89.60 kcal Atomic # 8 Polarization: -26.90 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.60 SS G_CDS: -1.16 Total: -9.76 kcal Total: -77.23 -0.22 -77.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663142316.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.187 kcal (2) G-P(sol) polarization free energy of solvation -77.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds