Wall clock time and date at job start Tue Mar 31 2020 17:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00128 * 2 1 4 4 C 1.53008 * 109.47081 * 293.95229 * 3 2 1 5 5 N 1.46497 * 109.47130 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99638 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00055 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99855 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.46930 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99974 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99392 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00055 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99912 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46852 * 90.00219 * 14 12 10 16 16 H 1.48500 * 109.47071 * 210.00035 * 14 12 10 17 17 H 1.48501 * 109.47106 * 330.00215 * 14 12 10 18 18 C 1.46907 * 110.99891 * 123.95008 * 2 1 3 19 19 H 1.08999 * 110.26664 * 290.25063 * 18 2 1 20 20 C 1.54343 * 110.30191 * 168.06898 * 18 2 1 21 21 C 1.54345 * 102.39355 * 267.42522 * 20 18 2 22 22 C 1.51370 * 105.16724 * 333.65246 * 21 20 18 23 23 C 1.38499 * 130.38597 * 197.17405 * 22 21 20 24 24 C 1.38103 * 120.21418 * 180.02562 * 23 22 21 25 25 C 1.38259 * 119.93370 * 359.97438 * 24 23 22 26 26 C 1.38101 * 119.93533 * 359.97438 * 25 24 23 27 27 C 1.38211 * 109.76172 * 17.18989 * 22 21 20 28 28 H 1.08998 * 109.46938 * 54.11385 * 1 2 3 29 29 H 1.09000 * 109.47037 * 174.11554 * 1 2 3 30 30 H 1.09002 * 109.47125 * 294.11401 * 1 2 3 31 31 H 1.09001 * 109.47616 * 173.95484 * 3 2 1 32 32 H 1.08994 * 109.47487 * 53.94958 * 3 2 1 33 33 H 1.09008 * 109.46643 * 300.00335 * 4 3 2 34 34 H 1.09001 * 109.46687 * 59.99687 * 4 3 2 35 35 H 0.96999 * 120.00120 * 0.02562 * 5 4 3 36 36 H 1.08996 * 109.47180 * 300.00591 * 8 6 5 37 37 H 1.09000 * 109.46635 * 60.00364 * 8 6 5 38 38 H 0.97003 * 119.99865 * 179.97438 * 13 12 10 39 39 H 1.08998 * 110.82253 * 25.65101 * 20 18 2 40 40 H 1.09004 * 110.82104 * 149.19833 * 20 18 2 41 41 H 1.09001 * 110.30289 * 214.73182 * 21 20 18 42 42 H 1.08997 * 110.30515 * 92.57809 * 21 20 18 43 43 H 1.08001 * 119.89551 * 0.02562 * 23 22 21 44 44 H 1.07997 * 120.03453 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.03175 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.89384 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1571 3.4249 -1.3186 6 6 1.9567 4.2235 -2.3856 7 8 1.3409 3.8103 -3.3453 8 6 2.4968 5.6305 -2.3857 9 16 2.0663 6.4418 -3.9453 10 6 2.7998 8.0220 -3.6807 11 1 3.3194 8.2282 -2.7567 12 6 2.7097 9.0016 -4.6598 13 7 3.2580 10.1818 -4.4624 14 14 1.8115 8.6447 -6.2584 15 1 0.3791 9.0087 -6.1133 16 1 2.4164 9.4427 -7.3549 17 1 1.9249 7.1988 -6.5777 18 6 1.9954 -0.7659 1.1377 19 1 1.8003 -0.2379 2.0710 20 6 3.5096 -1.0100 0.9643 21 6 3.5452 -2.3806 0.2555 22 6 2.2640 -3.0732 0.6680 23 6 1.9057 -4.4095 0.6045 24 6 0.6623 -4.8174 1.0457 25 6 -0.2283 -3.8895 1.5530 26 6 0.1275 -2.5567 1.6181 27 6 1.3736 -2.1455 1.1748 28 1 -0.3633 0.6024 -0.8326 29 1 -0.3633 -1.0223 -0.1054 30 1 -0.3633 0.4199 0.9380 31 1 3.0798 1.3444 0.1082 32 1 1.5611 1.9274 0.8308 33 1 2.0659 1.5013 -2.1492 34 1 0.5472 2.0844 -1.4266 35 1 2.6499 3.7552 -0.5512 36 1 2.0622 6.1866 -1.5551 37 1 3.5810 5.6033 -2.2770 38 1 3.1954 10.8663 -5.1469 39 1 3.9572 -0.2382 0.3381 40 1 4.0071 -1.0615 1.9328 41 1 4.4097 -2.9556 0.5873 42 1 3.5715 -2.2466 -0.8259 43 1 2.6010 -5.1350 0.2087 44 1 0.3861 -5.8602 0.9952 45 1 -1.2010 -4.2067 1.8989 46 1 -0.5685 -1.8325 2.0149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663142321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:50 Heat of formation + Delta-G solvation = -3.825249 kcal Electronic energy + Delta-G solvation = -25115.650358 eV Core-core repulsion = 21517.209530 eV Total energy + Delta-G solvation = -3598.440827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85128 -39.30682 -37.80699 -35.43369 -34.16140 -32.43659 -31.64674 -30.20926 -29.56213 -28.07925 -27.52984 -25.62577 -24.85267 -23.20339 -21.86282 -21.17326 -20.73525 -20.16239 -17.86338 -17.02517 -16.75801 -16.40791 -15.98504 -15.76114 -15.56399 -15.34326 -14.97168 -14.70430 -14.51379 -14.07697 -13.74779 -13.70831 -13.51251 -13.29774 -13.19076 -12.96582 -12.79277 -12.32964 -12.23060 -12.05227 -11.86558 -11.58429 -11.44104 -11.33832 -11.26403 -11.18659 -11.06013 -11.00201 -10.60169 -9.85540 -9.54195 -9.23094 -9.01517 -8.99087 -8.94630 -8.61830 -8.49551 -6.91398 -6.28668 -4.00369 0.96094 1.03634 2.72790 2.98682 3.13428 3.33435 3.40221 3.51373 3.59626 3.85778 4.03345 4.10737 4.33702 4.52605 4.63912 4.64783 4.68503 4.73603 4.75108 4.80275 4.94498 5.03210 5.10467 5.12153 5.16712 5.21150 5.26887 5.31093 5.36183 5.43608 5.53318 5.64032 5.64776 5.72821 5.74916 5.80256 5.80983 5.89809 6.01351 6.07210 6.14982 6.30726 6.46883 6.61366 6.65155 6.69610 7.60192 7.94365 8.41726 8.49732 9.17607 10.80507 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.033246 B = 0.001765 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.001344 B =15864.301128 C =16080.535456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.524 5.524 3 C 0.042 3.958 4 C 0.125 3.875 5 N -0.737 5.737 6 C 0.531 3.469 7 O -0.518 6.518 8 C -0.124 4.124 9 S -0.142 6.142 10 C -0.522 4.522 11 H 0.088 0.912 12 C 0.096 3.904 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.123 3.877 19 H 0.052 0.948 20 C -0.116 4.116 21 C -0.077 4.077 22 C -0.077 4.077 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.126 4.126 26 C -0.100 4.100 27 C -0.092 4.092 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.026 0.974 31 H 0.085 0.915 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.299 -29.459 16.707 33.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.249 5.249 3 C -0.086 4.086 4 C 0.001 3.999 5 N -0.392 5.392 6 C 0.317 3.683 7 O -0.392 6.392 8 C -0.274 4.274 9 S 0.085 5.915 10 C -0.669 4.669 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.681 3.319 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C 0.016 3.984 19 H 0.070 0.930 20 C -0.154 4.154 21 C -0.114 4.114 22 C -0.078 4.078 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.144 4.144 26 C -0.119 4.119 27 C -0.092 4.092 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.132 -30.186 14.596 33.676 hybrid contribution 0.221 1.151 1.591 1.977 sum -2.911 -29.035 16.188 33.369 Atomic orbital electron populations 1.22602 0.86876 1.03037 1.00805 1.61917 1.08366 1.12490 1.42107 1.22319 1.01146 0.88329 0.96840 1.21202 0.99454 0.81913 0.97377 1.45877 1.59367 1.13760 1.20235 1.20260 0.79302 0.86812 0.81929 1.90708 1.39624 1.75173 1.33736 1.23275 1.04455 0.94529 1.05179 1.84803 1.74846 1.13652 1.18248 1.22320 1.40871 0.95996 1.07734 0.89390 1.24712 0.94350 0.93950 0.98294 1.69938 1.43017 1.03736 1.35002 0.86735 0.80607 0.81377 0.83140 1.19215 1.19937 1.15898 1.21075 0.94501 0.90788 0.92071 0.93041 1.22406 0.94185 0.97697 1.01075 1.21009 0.94306 0.94688 1.01403 1.20610 0.96720 0.93180 0.97258 1.20649 0.96845 0.94716 1.00841 1.21063 0.93759 0.99568 0.98882 1.21021 0.99730 0.92936 1.00702 1.20686 0.95337 0.95987 0.99851 1.20336 0.94416 0.94863 0.99617 0.90609 0.90644 0.95498 0.89682 0.94016 0.90660 0.91560 0.76797 0.88528 0.88425 0.91950 0.89532 0.90584 0.90854 0.89505 0.86227 0.85935 0.85932 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 8.55 60.07 0.51 0.64 16 2 N -0.52 -4.52 4.64 -235.02 -1.09 -5.61 16 3 C 0.04 0.34 4.92 -3.82 -0.02 0.32 16 4 C 0.12 1.41 5.61 -4.04 -0.02 1.39 16 5 N -0.74 -9.20 5.56 -60.29 -0.33 -9.53 16 6 C 0.53 9.42 7.85 -10.98 -0.09 9.33 16 7 O -0.52 -11.31 15.86 5.55 0.09 -11.22 16 8 C -0.12 -2.38 6.16 36.01 0.22 -2.15 16 9 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 10 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 11 H 0.09 2.64 8.03 -52.49 -0.42 2.21 16 12 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 13 N -0.88 -26.57 13.97 55.49 0.78 -25.79 16 14 Si 0.86 21.85 27.74 -169.99 -4.71 17.14 16 15 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 18 C 0.12 0.96 2.62 -67.83 -0.18 0.78 16 19 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 20 C -0.12 -0.77 6.53 -25.32 -0.17 -0.93 16 21 C -0.08 -0.54 6.77 -26.85 -0.18 -0.72 16 22 C -0.08 -0.64 6.14 -104.21 -0.64 -1.28 16 23 C -0.11 -0.85 10.04 -39.53 -0.40 -1.24 16 24 C -0.11 -0.79 10.05 -39.62 -0.40 -1.19 16 25 C -0.13 -0.88 10.05 -39.62 -0.40 -1.28 16 26 C -0.10 -0.77 8.17 -39.53 -0.32 -1.09 16 27 C -0.09 -0.77 4.84 -104.21 -0.50 -1.27 16 28 H 0.08 0.69 6.22 -51.93 -0.32 0.37 16 29 H 0.07 0.65 5.90 -51.93 -0.31 0.34 16 30 H 0.03 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.08 0.61 6.21 -51.93 -0.32 0.29 16 32 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 33 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 34 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 35 H 0.40 3.72 8.47 -40.82 -0.35 3.37 16 36 H 0.10 1.72 8.14 -51.92 -0.42 1.29 16 37 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 38 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.09 0.56 6.27 -51.93 -0.33 0.24 16 40 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.17 16 45 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 46 H 0.12 0.76 7.85 -52.49 -0.41 0.35 16 LS Contribution 382.23 15.07 5.76 5.76 Total: -1.00 -34.39 382.23 -10.89 -45.29 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: -7.02 Total: 0.32 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -2.36 Total: -10.74 kcal Atomic # 7 Polarization: -40.29 SS G_CDS: -0.65 Total: -40.94 kcal Atomic # 8 Polarization: -11.31 SS G_CDS: 0.09 Total: -11.22 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.39 -10.89 -45.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663142321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.461 kcal (2) G-P(sol) polarization free energy of solvation -34.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds