Wall clock time and date at job start Tue Mar 31 2020 17:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 111.00128 * 2 1 4 4 C 1.53008 * 109.47081 * 293.95229 * 3 2 1 5 5 N 1.46497 * 109.47130 * 180.02562 * 4 3 2 6 6 C 1.34779 * 119.99638 * 179.97438 * 5 4 3 7 7 O 1.21284 * 120.00055 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99855 * 179.97438 * 6 5 4 9 9 S 1.80994 * 109.46930 * 180.02562 * 8 6 5 10 10 C 1.76205 * 99.99974 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99392 * 0.02562 * 10 9 8 12 12 C 1.38796 * 120.00251 * 180.02562 * 10 9 8 13 13 N 1.31626 * 120.00055 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99912 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46852 * 90.00219 * 14 12 10 16 16 H 1.48500 * 109.47071 * 210.00035 * 14 12 10 17 17 H 1.48501 * 109.47106 * 330.00215 * 14 12 10 18 18 C 1.46907 * 110.99891 * 123.95008 * 2 1 3 19 19 H 1.08999 * 110.26664 * 290.25063 * 18 2 1 20 20 C 1.54343 * 110.30191 * 168.06898 * 18 2 1 21 21 C 1.54345 * 102.39355 * 267.42522 * 20 18 2 22 22 C 1.51370 * 105.16724 * 333.65246 * 21 20 18 23 23 C 1.38499 * 130.38597 * 197.17405 * 22 21 20 24 24 C 1.38103 * 120.21418 * 180.02562 * 23 22 21 25 25 C 1.38259 * 119.93370 * 359.97438 * 24 23 22 26 26 C 1.38101 * 119.93533 * 359.97438 * 25 24 23 27 27 C 1.38211 * 109.76172 * 17.18989 * 22 21 20 28 28 H 1.08998 * 109.46938 * 54.11385 * 1 2 3 29 29 H 1.09000 * 109.47037 * 174.11554 * 1 2 3 30 30 H 1.09002 * 109.47125 * 294.11401 * 1 2 3 31 31 H 1.09001 * 109.47616 * 173.95484 * 3 2 1 32 32 H 1.08994 * 109.47487 * 53.94958 * 3 2 1 33 33 H 1.09008 * 109.46643 * 300.00335 * 4 3 2 34 34 H 1.09001 * 109.46687 * 59.99687 * 4 3 2 35 35 H 0.96999 * 120.00120 * 0.02562 * 5 4 3 36 36 H 1.08996 * 109.47180 * 300.00591 * 8 6 5 37 37 H 1.09000 * 109.46635 * 60.00364 * 8 6 5 38 38 H 0.97003 * 119.99865 * 179.97438 * 13 12 10 39 39 H 1.08998 * 110.82253 * 25.65101 * 20 18 2 40 40 H 1.09004 * 110.82104 * 149.19833 * 20 18 2 41 41 H 1.09001 * 110.30289 * 214.73182 * 21 20 18 42 42 H 1.08997 * 110.30515 * 92.57809 * 21 20 18 43 43 H 1.08001 * 119.89551 * 0.02562 * 23 22 21 44 44 H 1.07997 * 120.03453 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.03175 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.89384 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0574 -1.3183 5 7 2.1571 3.4249 -1.3186 6 6 1.9567 4.2235 -2.3856 7 8 1.3409 3.8103 -3.3453 8 6 2.4968 5.6305 -2.3857 9 16 2.0663 6.4418 -3.9453 10 6 2.7998 8.0220 -3.6807 11 1 3.3194 8.2282 -2.7567 12 6 2.7097 9.0016 -4.6598 13 7 3.2580 10.1818 -4.4624 14 14 1.8115 8.6447 -6.2584 15 1 0.3791 9.0087 -6.1133 16 1 2.4164 9.4427 -7.3549 17 1 1.9249 7.1988 -6.5777 18 6 1.9954 -0.7659 1.1377 19 1 1.8003 -0.2379 2.0710 20 6 3.5096 -1.0100 0.9643 21 6 3.5452 -2.3806 0.2555 22 6 2.2640 -3.0732 0.6680 23 6 1.9057 -4.4095 0.6045 24 6 0.6623 -4.8174 1.0457 25 6 -0.2283 -3.8895 1.5530 26 6 0.1275 -2.5567 1.6181 27 6 1.3736 -2.1455 1.1748 28 1 -0.3633 0.6024 -0.8326 29 1 -0.3633 -1.0223 -0.1054 30 1 -0.3633 0.4199 0.9380 31 1 3.0798 1.3444 0.1082 32 1 1.5611 1.9274 0.8308 33 1 2.0659 1.5013 -2.1492 34 1 0.5472 2.0844 -1.4266 35 1 2.6499 3.7552 -0.5512 36 1 2.0622 6.1866 -1.5551 37 1 3.5810 5.6033 -2.2770 38 1 3.1954 10.8663 -5.1469 39 1 3.9572 -0.2382 0.3381 40 1 4.0071 -1.0615 1.9328 41 1 4.4097 -2.9556 0.5873 42 1 3.5715 -2.2466 -0.8259 43 1 2.6010 -5.1350 0.2087 44 1 0.3861 -5.8602 0.9952 45 1 -1.2010 -4.2067 1.8989 46 1 -0.5685 -1.8325 2.0149 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663142321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:49 Heat of formation + Delta-G solvation = -26.423234 kcal Electronic energy + Delta-G solvation = -25116.630280 eV Core-core repulsion = 21517.209530 eV Total energy + Delta-G solvation = -3599.420749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 334.146 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.41654 -40.63534 -38.50418 -36.25078 -35.09331 -34.66601 -32.34749 -31.40026 -30.12860 -29.10260 -28.11248 -27.83754 -25.62695 -23.76727 -22.59350 -21.95012 -21.68465 -20.92223 -19.86467 -17.91980 -17.73962 -17.32990 -17.13971 -16.91860 -16.69010 -16.25605 -16.15155 -15.81049 -15.41657 -15.21497 -14.93187 -14.81951 -14.49110 -14.39643 -14.05781 -13.88888 -13.61572 -13.51930 -13.34170 -13.01781 -12.94719 -12.76106 -12.64850 -12.60585 -12.14123 -12.02386 -11.90998 -11.86234 -11.84389 -11.59969 -11.16766 -11.04554 -10.52804 -10.14346 -9.79012 -9.54503 -9.22879 -8.99232 -8.51151 -6.21887 0.41237 0.49307 0.99163 1.31629 1.47113 1.55615 1.56322 2.13470 2.25623 2.68284 2.79655 2.87154 3.14722 3.49102 3.53919 3.78462 3.93541 4.03213 4.10246 4.16558 4.18250 4.24026 4.24905 4.37309 4.43209 4.47350 4.48051 4.56467 4.64194 4.70575 4.81409 4.83311 4.91955 4.94179 5.05251 5.06931 5.14328 5.22735 5.30045 5.37049 5.54739 5.62502 5.71226 5.75395 5.98859 6.02624 6.11941 6.13194 6.46347 6.94229 7.19294 8.61082 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.033246 B = 0.001765 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.001344 B =15864.301128 C =16080.535456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.535 5.535 3 C 0.052 3.948 4 C 0.129 3.871 5 N -0.710 5.710 6 C 0.535 3.465 7 O -0.564 6.564 8 C -0.110 4.110 9 S -0.179 6.179 10 C -0.528 4.528 11 H 0.064 0.936 12 C 0.046 3.954 13 N -0.916 5.916 14 Si 0.913 3.087 15 H -0.263 1.263 16 H -0.259 1.259 17 H -0.237 1.237 18 C 0.125 3.875 19 H 0.056 0.944 20 C -0.113 4.113 21 C -0.077 4.077 22 C -0.094 4.094 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.134 4.134 26 C -0.110 4.110 27 C -0.107 4.107 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.035 0.965 31 H 0.101 0.899 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.418 0.582 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.277 0.723 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.132 0.868 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.321 -30.990 17.837 35.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.260 5.260 3 C -0.076 4.076 4 C 0.004 3.996 5 N -0.365 5.365 6 C 0.321 3.679 7 O -0.442 6.442 8 C -0.261 4.261 9 S 0.048 5.952 10 C -0.676 4.676 11 H 0.082 0.918 12 C -0.159 4.159 13 N -0.554 5.554 14 Si 0.735 3.265 15 H -0.187 1.187 16 H -0.183 1.183 17 H -0.161 1.161 18 C 0.017 3.983 19 H 0.074 0.926 20 C -0.151 4.151 21 C -0.113 4.113 22 C -0.095 4.095 23 C -0.143 4.143 24 C -0.139 4.139 25 C -0.151 4.151 26 C -0.129 4.129 27 C -0.108 4.108 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.255 0.745 36 H 0.133 0.867 37 H 0.134 0.866 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.150 0.850 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.129 -31.730 15.784 35.577 hybrid contribution 0.241 1.502 1.395 2.064 sum -2.888 -30.228 17.179 34.888 Atomic orbital electron populations 1.22540 0.87033 1.02657 1.00779 1.61881 1.08384 1.12684 1.43008 1.22214 1.02174 0.88099 0.95099 1.21230 0.98677 0.80850 0.98799 1.45593 1.57994 1.13633 1.19232 1.19964 0.78936 0.86512 0.82510 1.90700 1.41956 1.75838 1.35746 1.23263 1.05842 0.95180 1.01816 1.84755 1.74921 1.12354 1.23176 1.22461 1.40500 0.97814 1.06820 0.91818 1.25548 0.95129 0.93851 1.01417 1.70013 1.44318 1.04685 1.36396 0.85880 0.79647 0.81158 0.79767 1.18734 1.18335 1.16141 1.21105 0.95069 0.90406 0.91701 0.92633 1.22432 0.93512 0.97407 1.01712 1.21015 0.94383 0.95124 1.00826 1.20867 0.97302 0.93655 0.97643 1.20921 0.97497 0.94916 1.00969 1.21371 0.93539 1.00652 0.98316 1.21315 1.00582 0.92810 1.00437 1.20885 0.95427 0.96603 0.99977 1.20515 0.94840 0.95236 1.00174 0.91625 0.91039 0.94645 0.88088 0.92744 0.92190 0.92538 0.74486 0.86691 0.86578 0.91383 0.89290 0.89337 0.89684 0.90494 0.85000 0.84034 0.84196 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 8.55 127.69 1.09 1.38 16 2 N -0.53 -8.40 4.64 -897.48 -4.16 -12.56 16 3 C 0.05 0.73 4.92 86.31 0.42 1.16 16 4 C 0.13 2.70 5.61 86.38 0.48 3.18 16 5 N -0.71 -16.06 5.56 -463.03 -2.57 -18.64 16 6 C 0.54 18.18 7.85 87.66 0.69 18.87 16 7 O -0.56 -24.35 15.86 -3.04 -0.05 -24.40 16 8 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 9 S -0.18 -9.02 18.55 -56.49 -1.05 -10.07 16 10 C -0.53 -30.66 10.04 67.95 0.68 -29.98 16 11 H 0.06 3.88 8.03 -2.91 -0.02 3.85 16 12 C 0.05 2.70 5.50 84.86 0.47 3.16 16 13 N -0.92 -55.67 13.97 21.65 0.30 -55.36 16 14 Si 0.91 45.10 27.74 68.60 1.90 47.00 16 15 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 16 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 17 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 18 C 0.12 1.72 2.62 44.84 0.12 1.83 16 19 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 20 C -0.11 -1.28 6.53 31.51 0.21 -1.07 16 21 C -0.08 -0.98 6.77 30.52 0.21 -0.77 16 22 C -0.09 -1.46 6.14 -19.60 -0.12 -1.58 16 23 C -0.13 -1.75 10.04 22.30 0.22 -1.53 16 24 C -0.12 -1.51 10.05 22.24 0.22 -1.29 16 25 C -0.13 -1.70 10.05 22.24 0.22 -1.48 16 26 C -0.11 -1.58 8.17 22.30 0.18 -1.40 16 27 C -0.11 -1.68 4.84 -19.59 -0.09 -1.77 16 28 H 0.07 1.16 6.22 -2.39 -0.01 1.15 16 29 H 0.07 1.19 5.90 -2.39 -0.01 1.17 16 30 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 1.13 6.21 -2.39 -0.01 1.11 16 32 H 0.05 0.66 8.12 -2.39 -0.02 0.64 16 33 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.06 1.34 6.44 -2.39 -0.02 1.33 16 35 H 0.42 6.39 8.47 -92.71 -0.79 5.60 16 36 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 37 H 0.12 3.88 8.14 -2.39 -0.02 3.86 16 38 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.09 0.95 6.27 -2.39 -0.01 0.94 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.13 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.14 1.18 8.06 -2.91 -0.02 1.16 16 46 H 0.12 1.49 7.85 -2.91 -0.02 1.46 16 Total: -1.00 -74.55 382.23 -0.02 -74.57 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.16 Total: 14.39 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 5.44 Total: -14.93 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -6.43 Total: -86.56 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: -0.05 Total: -24.40 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.90 Total: 47.00 kcal Atomic # 16 Polarization: -9.02 SS G_CDS: -1.05 Total: -10.07 kcal Total: -74.55 -0.02 -74.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663142321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.144 kcal (2) G-P(sol) polarization free energy of solvation -74.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds