Wall clock time and date at job start Tue Mar 31 2020 17:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65606 * 119.99694 * 2 1 4 4 O 1.42100 * 106.39925 * 311.45989 * 3 2 1 5 5 O 1.42101 * 106.39889 * 178.54064 * 3 2 1 6 6 N 1.65599 * 107.21856 * 64.99924 * 3 2 1 7 7 C 1.46499 * 119.99720 * 64.99954 * 6 3 2 8 8 C 1.50703 * 109.46910 * 164.99726 * 7 6 3 9 9 O 1.21282 * 120.00119 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00034 * 180.27558 * 8 7 6 11 11 C 1.46500 * 120.00114 * 179.73052 * 10 8 7 12 12 C 1.52998 * 109.47233 * 175.12819 * 11 10 8 13 13 N 1.46504 * 110.01384 * 303.89845 * 12 11 10 14 14 C 1.36935 * 120.00238 * 301.46100 * 13 12 11 15 15 H 1.08004 * 119.99665 * 354.60705 * 14 13 12 16 16 C 1.38803 * 120.00122 * 174.60616 * 14 13 12 17 17 N 1.31615 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00108 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47502 * 89.99947 * 18 16 14 20 20 H 1.48501 * 109.47176 * 210.00396 * 18 16 14 21 21 H 1.48504 * 109.47222 * 329.99976 * 18 16 14 22 22 C 1.54268 * 110.03472 * 182.45664 * 12 11 10 23 23 C 1.54883 * 104.19573 * 217.10494 * 22 12 11 24 24 C 1.54893 * 102.75251 * 37.94262 * 23 22 12 25 25 C 1.53881 * 110.03276 * 65.28891 * 12 11 10 26 26 H 1.09003 * 109.47118 * 299.99969 * 1 2 3 27 27 H 1.08998 * 109.47384 * 60.00269 * 1 2 3 28 28 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 29 29 H 0.96994 * 120.00197 * 179.97438 * 2 1 3 30 30 H 0.96991 * 120.00200 * 244.99848 * 6 3 2 31 31 H 1.09002 * 109.47552 * 45.00167 * 7 6 3 32 32 H 1.08997 * 109.47405 * 284.99951 * 7 6 3 33 33 H 0.97006 * 119.99722 * 359.72424 * 10 8 7 34 34 H 1.09006 * 109.46355 * 295.12188 * 11 10 8 35 35 H 1.08991 * 109.47267 * 55.12455 * 11 10 8 36 36 H 0.97002 * 119.99847 * 121.46211 * 13 12 11 37 37 H 0.97010 * 120.00288 * 179.97438 * 17 16 14 38 38 H 1.08996 * 110.48206 * 335.78366 * 22 12 11 39 39 H 1.09003 * 110.48427 * 98.42263 * 22 12 11 40 40 H 1.08999 * 110.75451 * 279.62307 * 23 22 12 41 41 H 1.08998 * 110.75356 * 156.25739 * 23 22 12 42 42 H 1.08993 * 110.48645 * 203.37957 * 24 23 22 43 43 H 1.08995 * 110.48639 * 80.73189 * 24 23 22 44 44 H 1.08999 * 110.03041 * 238.56963 * 25 12 11 45 45 H 1.08998 * 110.03252 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1004 0.0347 6 7 1.9591 2.1930 1.4336 7 6 2.3998 1.5975 2.6975 8 6 2.3104 2.6260 3.7954 9 8 1.9168 3.7459 3.5467 10 7 2.6725 2.3027 5.0527 11 6 2.5912 3.3042 6.1189 12 6 2.9401 2.6525 7.4584 13 7 2.0605 1.5066 7.7027 14 6 0.7031 1.6822 7.7451 15 1 0.2850 2.6762 7.6856 16 6 -0.1356 0.5826 7.8644 17 7 0.3739 -0.6288 7.9373 18 14 -1.9873 0.8220 7.9214 19 1 -2.5350 0.7775 6.5418 20 1 -2.6015 -0.2594 8.7329 21 1 -2.2976 2.1383 8.5349 22 6 2.7987 3.6812 8.5993 23 6 3.9612 3.3403 9.5644 24 6 5.1107 2.9658 8.5961 25 6 4.4101 2.1976 7.4564 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8400 0.0004 30 1 1.4718 3.0316 1.4364 31 1 3.4314 1.2594 2.5996 32 1 1.7609 0.7489 2.9416 33 1 2.9870 1.4069 5.2517 34 1 3.2945 4.1113 5.9134 35 1 1.5792 3.7064 6.1631 36 1 2.4396 0.6236 7.8345 37 1 -0.2122 -1.3973 8.0211 38 1 2.9073 4.6951 8.2143 39 1 1.8386 3.5638 9.1020 40 1 3.7001 2.4940 10.1998 41 1 4.2305 4.2081 10.1663 42 1 5.8378 2.3263 9.0964 43 1 5.5927 3.8641 8.2106 44 1 4.4691 1.1244 7.6380 45 1 4.8748 2.4407 6.5009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753666409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:04 Heat of formation + Delta-G solvation = -109.338423 kcal Electronic energy + Delta-G solvation = -27864.869362 eV Core-core repulsion = 23851.003877 eV Total energy + Delta-G solvation = -4013.865485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.151 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.64058 -38.28912 -37.35520 -35.99155 -35.23828 -34.74269 -34.12184 -33.40000 -30.77298 -28.53877 -28.27634 -26.73209 -26.19020 -24.25961 -23.15438 -20.69698 -20.10529 -19.85738 -18.79902 -18.38662 -17.79583 -17.11539 -16.93947 -16.21628 -15.90205 -15.66695 -15.25108 -14.89362 -14.71802 -14.42415 -14.06827 -14.00992 -13.50244 -13.39170 -13.14139 -13.06276 -12.68518 -12.63974 -12.25850 -12.18568 -12.15901 -11.91466 -11.82276 -11.51534 -11.18062 -10.85648 -10.77905 -10.70197 -10.57413 -10.30167 -10.19026 -9.93415 -9.91878 -9.88361 -9.72298 -9.58882 -8.99267 -8.56094 -7.09237 -5.88721 -3.17824 0.45425 2.67971 2.88109 3.35026 3.42124 3.42298 3.43098 3.58083 4.35709 4.49151 4.70847 4.83516 5.04703 5.05857 5.17213 5.18358 5.23137 5.27967 5.32077 5.48727 5.53063 5.61151 5.68889 5.75143 5.88380 5.89364 6.04365 6.11973 6.20222 6.25964 6.37214 6.49672 6.52521 6.64551 6.71824 6.75753 6.88312 6.93530 7.00674 7.63377 7.90183 8.29870 8.51839 9.41948 9.95598 10.31142 11.33126 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.003643 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.554170 B = 7685.039186 C = 9384.511225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -1.131 6.131 3 S 2.799 3.201 4 O -0.977 6.977 5 O -0.980 6.980 6 N -1.113 6.113 7 C 0.099 3.901 8 C 0.510 3.490 9 O -0.549 6.549 10 N -0.694 5.694 11 C 0.120 3.880 12 C 0.188 3.812 13 N -0.711 5.711 14 C -0.233 4.233 15 H 0.069 0.931 16 C -0.008 4.008 17 N -0.931 5.931 18 Si 0.901 3.099 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.132 4.132 23 C -0.117 4.117 24 C -0.121 4.121 25 C -0.126 4.126 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.417 0.583 30 H 0.426 0.574 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.404 0.596 34 H 0.052 0.948 35 H 0.069 0.931 36 H 0.384 0.616 37 H 0.255 0.745 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.067 0.933 41 H 0.054 0.946 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.069 0.931 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.020 0.824 -8.982 10.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.892 5.892 3 S 2.804 3.196 4 O -0.961 6.961 5 O -0.963 6.963 6 N -0.878 5.878 7 C -0.031 4.031 8 C 0.293 3.707 9 O -0.428 6.428 10 N -0.344 5.344 11 C -0.006 4.006 12 C 0.096 3.904 13 N -0.352 5.352 14 C -0.364 4.364 15 H 0.087 0.913 16 C -0.204 4.204 17 N -0.579 5.579 18 Si 0.732 3.268 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.172 4.172 23 C -0.155 4.155 24 C -0.158 4.158 25 C -0.165 4.165 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.100 0.900 29 H 0.250 0.750 30 H 0.264 0.736 31 H 0.123 0.877 32 H 0.115 0.885 33 H 0.240 0.760 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.219 0.781 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.097 0.903 40 H 0.086 0.914 41 H 0.073 0.927 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.088 0.912 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.090 1.984 -9.838 11.739 hybrid contribution -1.258 -0.924 0.618 1.679 sum 4.832 1.060 -9.220 10.463 Atomic orbital electron populations 1.21463 0.78395 1.04205 1.02113 1.55674 1.16425 1.25113 1.92036 1.01508 0.73028 0.72558 0.72544 1.93631 1.79134 1.68829 1.54479 1.93628 1.31783 1.84021 1.86913 1.55567 1.73922 1.37334 1.20991 1.21035 1.02295 0.96000 0.83776 1.20202 0.77894 0.88707 0.83877 1.90654 1.47421 1.22113 1.82620 1.45655 1.65164 1.16306 1.07252 1.21928 1.01591 0.89887 0.87233 1.20473 0.89440 0.89421 0.91061 1.42558 1.02586 1.04899 1.85190 1.19085 0.82471 0.92662 1.42154 0.91280 1.24669 0.97595 0.95261 1.02877 1.69647 1.33808 0.97245 1.57234 0.86289 0.86066 0.76999 0.77410 1.21864 1.21879 1.20790 1.22821 0.99479 0.97743 0.97146 1.22385 0.95195 1.00490 0.97398 1.22301 0.97543 0.99393 0.96611 1.22441 0.95150 1.00573 0.98287 0.91858 0.91576 0.89998 0.74974 0.73601 0.87674 0.88476 0.76040 0.92941 0.91304 0.78086 0.93563 0.92913 0.90284 0.91398 0.92716 0.92332 0.92268 0.91228 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.64 11.16 59.85 0.67 1.31 16 2 N -1.13 -9.48 6.25 -16.63 -0.10 -9.59 16 3 S 2.80 32.27 6.18 -107.50 -0.66 31.60 16 4 O -0.98 -14.19 17.86 -57.17 -1.02 -15.21 16 5 O -0.98 -13.77 17.61 -57.17 -1.01 -14.78 16 6 N -1.11 -13.26 5.99 -11.65 -0.07 -13.33 16 7 C 0.10 1.19 6.73 -5.19 -0.03 1.16 16 8 C 0.51 8.08 7.90 -10.98 -0.09 7.99 16 9 O -0.55 -10.38 15.73 5.56 0.09 -10.30 16 10 N -0.69 -10.95 5.10 -60.29 -0.31 -11.26 16 11 C 0.12 2.04 3.99 -4.04 -0.02 2.02 16 12 C 0.19 3.17 0.68 -130.70 -0.09 3.08 16 13 N -0.71 -14.93 4.76 -46.19 -0.22 -15.15 16 14 C -0.23 -5.69 8.39 -15.06 -0.13 -5.82 16 15 H 0.07 1.72 7.23 -52.48 -0.38 1.34 16 16 C -0.01 -0.21 5.50 -17.44 -0.10 -0.30 16 17 N -0.93 -25.44 13.06 55.49 0.72 -24.72 16 18 Si 0.90 21.22 29.55 -169.99 -5.02 16.20 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 C -0.13 -2.15 5.94 -25.07 -0.15 -2.29 16 23 C -0.12 -1.66 6.91 -24.74 -0.17 -1.84 16 24 C -0.12 -1.54 6.83 -25.07 -0.17 -1.71 16 25 C -0.13 -1.79 5.80 -25.61 -0.15 -1.94 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.42 2.68 8.96 -34.47 -0.31 2.37 16 30 H 0.43 5.39 7.70 -34.47 -0.27 5.13 16 31 H 0.11 1.08 7.75 -51.93 -0.40 0.68 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.40 5.97 7.99 -40.82 -0.33 5.64 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 1.37 7.49 -51.93 -0.39 0.98 16 36 H 0.38 8.69 7.28 -40.82 -0.30 8.40 16 37 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.05 0.79 7.85 -51.93 -0.41 0.38 16 39 H 0.08 1.49 7.12 -51.93 -0.37 1.12 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 1.02 7.44 -51.93 -0.39 0.63 16 45 H 0.06 0.80 7.54 -51.93 -0.39 0.41 16 LS Contribution 379.14 15.07 5.71 5.71 Total: -1.00 -33.05 379.14 -9.17 -42.22 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: -6.86 Total: 16.93 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -0.42 Total: 1.67 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: 0.02 Total: -74.05 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.94 Total: -40.29 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 32.27 SS G_CDS: -0.66 Total: 31.60 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.05 -9.17 -42.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.115 kcal (2) G-P(sol) polarization free energy of solvation -33.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds