Wall clock time and date at job start Tue Mar 31 2020 17:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 S 1.65606 * 119.99694 * 2 1 4 4 O 1.42100 * 106.39925 * 311.45989 * 3 2 1 5 5 O 1.42101 * 106.39889 * 178.54064 * 3 2 1 6 6 N 1.65599 * 107.21856 * 64.99924 * 3 2 1 7 7 C 1.46499 * 119.99720 * 64.99954 * 6 3 2 8 8 C 1.50703 * 109.46910 * 164.99726 * 7 6 3 9 9 O 1.21282 * 120.00119 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00034 * 180.27558 * 8 7 6 11 11 C 1.46500 * 120.00114 * 179.73052 * 10 8 7 12 12 C 1.52998 * 109.47233 * 175.12819 * 11 10 8 13 13 N 1.46504 * 110.01384 * 303.89845 * 12 11 10 14 14 C 1.36935 * 120.00238 * 301.46100 * 13 12 11 15 15 H 1.08004 * 119.99665 * 354.60705 * 14 13 12 16 16 C 1.38803 * 120.00122 * 174.60616 * 14 13 12 17 17 N 1.31615 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00108 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47502 * 89.99947 * 18 16 14 20 20 H 1.48501 * 109.47176 * 210.00396 * 18 16 14 21 21 H 1.48504 * 109.47222 * 329.99976 * 18 16 14 22 22 C 1.54268 * 110.03472 * 182.45664 * 12 11 10 23 23 C 1.54883 * 104.19573 * 217.10494 * 22 12 11 24 24 C 1.54893 * 102.75251 * 37.94262 * 23 22 12 25 25 C 1.53881 * 110.03276 * 65.28891 * 12 11 10 26 26 H 1.09003 * 109.47118 * 299.99969 * 1 2 3 27 27 H 1.08998 * 109.47384 * 60.00269 * 1 2 3 28 28 H 1.09000 * 109.47082 * 180.02562 * 1 2 3 29 29 H 0.96994 * 120.00197 * 179.97438 * 2 1 3 30 30 H 0.96991 * 120.00200 * 244.99848 * 6 3 2 31 31 H 1.09002 * 109.47552 * 45.00167 * 7 6 3 32 32 H 1.08997 * 109.47405 * 284.99951 * 7 6 3 33 33 H 0.97006 * 119.99722 * 359.72424 * 10 8 7 34 34 H 1.09006 * 109.46355 * 295.12188 * 11 10 8 35 35 H 1.08991 * 109.47267 * 55.12455 * 11 10 8 36 36 H 0.97002 * 119.99847 * 121.46211 * 13 12 11 37 37 H 0.97010 * 120.00288 * 179.97438 * 17 16 14 38 38 H 1.08996 * 110.48206 * 335.78366 * 22 12 11 39 39 H 1.09003 * 110.48427 * 98.42263 * 22 12 11 40 40 H 1.08999 * 110.75451 * 279.62307 * 23 22 12 41 41 H 1.08998 * 110.75356 * 156.25739 * 23 22 12 42 42 H 1.08993 * 110.48645 * 203.37957 * 24 23 22 43 43 H 1.08995 * 110.48639 * 80.73189 * 24 23 22 44 44 H 1.08999 * 110.03041 * 238.56963 * 25 12 11 45 45 H 1.08998 * 110.03252 * 359.97438 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7119 2.2329 -1.0216 5 8 3.6738 1.1004 0.0347 6 7 1.9591 2.1930 1.4336 7 6 2.3998 1.5975 2.6975 8 6 2.3104 2.6260 3.7954 9 8 1.9168 3.7459 3.5467 10 7 2.6725 2.3027 5.0527 11 6 2.5912 3.3042 6.1189 12 6 2.9401 2.6525 7.4584 13 7 2.0605 1.5066 7.7027 14 6 0.7031 1.6822 7.7451 15 1 0.2850 2.6762 7.6856 16 6 -0.1356 0.5826 7.8644 17 7 0.3739 -0.6288 7.9373 18 14 -1.9873 0.8220 7.9214 19 1 -2.5350 0.7775 6.5418 20 1 -2.6015 -0.2594 8.7329 21 1 -2.2976 2.1383 8.5349 22 6 2.7987 3.6812 8.5993 23 6 3.9612 3.3403 9.5644 24 6 5.1107 2.9658 8.5961 25 6 4.4101 2.1976 7.4564 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.9500 -0.8400 0.0004 30 1 1.4718 3.0316 1.4364 31 1 3.4314 1.2594 2.5996 32 1 1.7609 0.7489 2.9416 33 1 2.9870 1.4069 5.2517 34 1 3.2945 4.1113 5.9134 35 1 1.5792 3.7064 6.1631 36 1 2.4396 0.6236 7.8345 37 1 -0.2122 -1.3973 8.0211 38 1 2.9073 4.6951 8.2143 39 1 1.8386 3.5638 9.1020 40 1 3.7001 2.4940 10.1998 41 1 4.2305 4.2081 10.1663 42 1 5.8378 2.3263 9.0964 43 1 5.5927 3.8641 8.2106 44 1 4.4691 1.1244 7.6380 45 1 4.8748 2.4407 6.5009 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753666409.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:03 Heat of formation + Delta-G solvation = -138.011578 kcal Electronic energy + Delta-G solvation = -27866.112723 eV Core-core repulsion = 23851.003877 eV Total energy + Delta-G solvation = -4015.108846 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 334.151 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.94530 -39.60305 -38.39291 -37.03354 -36.02346 -35.72318 -35.45806 -35.09208 -32.42080 -29.93764 -29.51272 -27.93445 -26.85341 -25.88088 -24.61634 -21.92509 -21.14961 -20.93306 -20.13492 -19.37843 -18.91531 -18.76257 -18.04120 -17.36742 -17.14133 -16.78303 -16.49965 -16.09759 -15.90987 -15.72742 -15.42631 -15.14309 -14.83789 -14.57370 -14.33259 -14.01778 -13.90929 -13.83700 -13.36963 -13.30895 -13.24917 -13.22535 -13.18396 -12.90879 -12.55242 -12.44178 -12.33359 -12.13921 -11.85681 -11.70241 -11.55940 -11.35298 -11.29896 -11.07436 -10.84119 -10.68040 -10.61152 -9.91923 -8.91633 -7.88173 -5.13204 -0.47481 1.45430 1.49143 1.53930 1.62156 1.78948 2.37532 2.53289 2.59073 3.41721 3.43470 3.63805 3.79963 3.89093 3.97823 4.16323 4.18799 4.21743 4.35160 4.45034 4.51151 4.61791 4.64632 4.69810 4.80490 4.90082 4.95900 4.98332 5.00336 5.08183 5.16778 5.21283 5.30273 5.43041 5.50123 5.59117 5.65550 5.68750 5.84461 6.13216 6.35642 6.63955 7.26096 7.43599 8.16846 8.41970 9.33943 Molecular weight = 334.15amu Principal moments of inertia in cm(-1) A = 0.011040 B = 0.003643 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.554170 B = 7685.039186 C = 9384.511225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.119 6.119 3 S 2.822 3.178 4 O -1.008 7.008 5 O -1.004 7.004 6 N -1.115 6.115 7 C 0.102 3.898 8 C 0.504 3.496 9 O -0.584 6.584 10 N -0.693 5.693 11 C 0.126 3.874 12 C 0.184 3.816 13 N -0.712 5.712 14 C -0.212 4.212 15 H 0.061 0.939 16 C -0.060 4.060 17 N -0.958 5.958 18 Si 0.946 3.054 19 H -0.293 1.293 20 H -0.299 1.299 21 H -0.281 1.281 22 C -0.133 4.133 23 C -0.114 4.114 24 C -0.113 4.113 25 C -0.121 4.121 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.428 0.572 30 H 0.423 0.577 31 H 0.128 0.872 32 H 0.118 0.882 33 H 0.411 0.589 34 H 0.067 0.933 35 H 0.035 0.965 36 H 0.377 0.623 37 H 0.248 0.752 38 H 0.068 0.932 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.275 0.735 -9.269 11.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.884 5.884 3 S 2.827 3.173 4 O -0.991 6.991 5 O -0.988 6.988 6 N -0.879 5.879 7 C -0.028 4.028 8 C 0.290 3.710 9 O -0.465 6.465 10 N -0.342 5.342 11 C 0.000 4.000 12 C 0.094 3.906 13 N -0.353 5.353 14 C -0.345 4.345 15 H 0.079 0.921 16 C -0.253 4.253 17 N -0.609 5.609 18 Si 0.778 3.222 19 H -0.221 1.221 20 H -0.226 1.226 21 H -0.207 1.207 22 C -0.173 4.173 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.158 4.158 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.264 0.736 30 H 0.260 0.740 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.247 0.753 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.211 0.789 37 H 0.057 0.943 38 H 0.087 0.913 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.375 1.911 -10.122 12.669 hybrid contribution -1.640 -0.821 0.721 1.970 sum 5.736 1.090 -9.402 11.067 Atomic orbital electron populations 1.21660 0.77509 1.05844 1.02027 1.55352 1.16863 1.24522 1.91621 1.00661 0.72250 0.72541 0.71886 1.93590 1.79585 1.70182 1.55751 1.93588 1.33582 1.84435 1.87160 1.55532 1.73951 1.37435 1.20966 1.21156 1.04205 0.95122 0.82334 1.20832 0.76830 0.88958 0.84414 1.90638 1.48841 1.23805 1.83181 1.45652 1.65079 1.16340 1.07154 1.21776 0.99971 0.90602 0.87683 1.20714 0.90626 0.88309 0.90995 1.42613 1.01867 1.05809 1.85011 1.19200 0.84133 0.91912 1.39216 0.92093 1.25138 1.00128 0.95414 1.04599 1.69742 1.34166 0.97452 1.59563 0.85555 0.83262 0.76465 0.76932 1.22092 1.22599 1.20697 1.22787 0.98888 0.98433 0.97187 1.22353 0.94852 1.00661 0.97253 1.22295 0.97033 1.00255 0.95487 1.22392 0.92993 1.00493 0.99966 0.91964 0.91783 0.87536 0.73553 0.74000 0.85450 0.86437 0.75299 0.91505 0.94653 0.78944 0.94310 0.91349 0.93509 0.93237 0.90635 0.90813 0.90338 0.91685 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.00 11.16 127.77 1.43 2.43 16 2 N -1.12 -16.65 6.25 -206.54 -1.29 -17.94 16 3 S 2.82 61.86 6.18 -56.49 -0.35 61.51 16 4 O -1.01 -28.73 17.86 -128.00 -2.29 -31.01 16 5 O -1.00 -26.87 17.61 -128.00 -2.25 -29.13 16 6 N -1.12 -25.34 5.99 -190.79 -1.14 -26.49 16 7 C 0.10 2.27 6.73 85.63 0.58 2.84 16 8 C 0.50 15.48 7.90 87.66 0.69 16.17 16 9 O -0.58 -21.91 15.73 -3.04 -0.05 -21.95 16 10 N -0.69 -21.08 5.10 -463.06 -2.36 -23.44 16 11 C 0.13 4.20 3.99 86.38 0.34 4.54 16 12 C 0.18 6.02 0.68 4.33 0.00 6.02 16 13 N -0.71 -29.81 4.76 -300.06 -1.43 -31.24 16 14 C -0.21 -10.45 8.39 84.03 0.70 -9.74 16 15 H 0.06 3.08 7.23 -2.91 -0.02 3.06 16 16 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 17 N -0.96 -52.76 13.06 21.65 0.28 -52.48 16 18 Si 0.95 44.02 29.55 68.60 2.03 46.05 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 C -0.13 -4.20 5.94 31.67 0.19 -4.01 16 23 C -0.11 -3.00 6.91 31.88 0.22 -2.78 16 24 C -0.11 -2.51 6.83 31.67 0.22 -2.30 16 25 C -0.12 -3.11 5.80 31.32 0.18 -2.93 16 26 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 28 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.43 4.53 8.96 -96.75 -0.87 3.67 16 30 H 0.42 10.54 7.70 -96.76 -0.75 9.79 16 31 H 0.13 2.31 7.75 -2.39 -0.02 2.29 16 32 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.41 11.51 7.99 -92.70 -0.74 10.77 16 34 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.03 1.41 7.49 -2.39 -0.02 1.39 16 36 H 0.38 16.99 7.28 -92.71 -0.67 16.32 16 37 H 0.25 13.55 8.31 -92.70 -0.77 12.78 16 38 H 0.07 1.93 7.85 -2.39 -0.02 1.91 16 39 H 0.05 1.77 7.12 -2.39 -0.02 1.75 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.06 1.77 7.44 -2.39 -0.02 1.75 16 45 H 0.08 1.79 7.54 -2.39 -0.02 1.77 16 Total: -1.00 -71.14 379.14 -5.81 -76.95 By element: Atomic # 1 Polarization: 43.57 SS G_CDS: -1.98 Total: 41.58 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 5.02 Total: 7.58 kcal Atomic # 7 Polarization: -145.64 SS G_CDS: -5.94 Total: -151.58 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -4.59 Total: -82.09 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 61.86 SS G_CDS: -0.35 Total: 61.51 kcal Total: -71.14 -5.81 -76.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753666409.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.058 kcal (2) G-P(sol) polarization free energy of solvation -71.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds