Wall clock time and date at job start Wed Apr 1 2020 00:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86800 * 119.99579 * 2 1 4 4 H 1.48498 * 109.47239 * 274.99443 * 3 2 1 5 5 H 1.48496 * 109.47453 * 34.99911 * 3 2 1 6 6 H 1.48504 * 109.46651 * 154.99689 * 3 2 1 7 7 C 1.40046 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99776 * 174.69360 * 7 2 1 9 9 C 1.46382 * 120.00162 * 354.69499 * 7 2 1 10 10 O 1.21681 * 119.99632 * 5.27457 * 9 7 2 11 11 N 1.34773 * 119.99953 * 185.27776 * 9 7 2 12 12 C 1.46498 * 120.00098 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47188 * 180.02562 * 12 11 9 14 14 C 1.38168 * 120.02727 * 260.02257 * 13 12 11 15 15 C 1.38241 * 120.05941 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.10851 * 359.74204 * 15 14 13 17 17 C 1.38123 * 120.05726 * 0.51019 * 16 15 14 18 18 C 1.38711 * 120.03042 * 79.99895 * 13 12 11 19 19 O 1.35894 * 120.05464 * 0.02562 * 18 13 12 20 20 C 1.42903 * 117.00131 * 180.02562 * 19 18 13 21 21 C 1.52999 * 109.47230 * 179.97438 * 20 19 18 22 22 N 1.46904 * 109.47298 * 65.08843 * 21 20 19 23 23 C 1.47007 * 110.99958 * 199.49844 * 22 21 20 24 24 C 1.53103 * 109.25571 * 177.60524 * 23 22 21 25 25 O 1.43012 * 109.25809 * 56.85164 * 24 23 22 26 26 C 1.43019 * 113.73685 * 301.32499 * 25 24 23 27 27 C 1.47014 * 111.00089 * 75.86093 * 22 21 20 28 28 H 0.96996 * 120.00225 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99686 * 0.02562 * 11 9 7 30 30 H 1.08996 * 109.46859 * 60.00161 * 12 11 9 31 31 H 1.09002 * 109.47139 * 300.00398 * 12 11 9 32 32 H 1.08003 * 119.96946 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.94826 * 179.97438 * 15 14 13 34 34 H 1.08001 * 119.97554 * 180.27636 * 16 15 14 35 35 H 1.07997 * 120.03294 * 179.76846 * 17 16 15 36 36 H 1.08996 * 109.46984 * 299.99775 * 20 19 18 37 37 H 1.08994 * 109.47034 * 59.99701 * 20 19 18 38 38 H 1.08998 * 109.46873 * 185.08828 * 21 20 19 39 39 H 1.08998 * 109.47192 * 305.08720 * 21 20 19 40 40 H 1.09003 * 109.50660 * 297.53716 * 23 22 21 41 41 H 1.08998 * 109.50908 * 57.67117 * 23 22 21 42 42 H 1.08995 * 109.50428 * 296.91221 * 24 23 22 43 43 H 1.09005 * 109.54071 * 176.80200 * 24 23 22 44 44 H 1.08998 * 109.50706 * 298.74165 * 26 25 24 45 45 H 1.09000 * 109.54440 * 178.63067 * 26 25 24 46 46 H 1.09003 * 109.50253 * 302.32933 * 27 22 21 47 47 H 1.08998 * 109.50462 * 62.41196 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3826 2.1075 -1.3947 5 1 1.4949 2.6199 0.8030 6 1 3.5870 1.4120 0.5918 7 6 2.0070 -1.2128 -0.0005 8 1 3.0835 -1.2148 -0.0870 9 6 1.2798 -2.4779 0.1161 10 8 0.0630 -2.4823 0.1169 11 7 1.9580 -3.6376 0.2227 12 6 1.2303 -4.9037 0.3400 13 6 2.2138 -6.0406 0.4450 14 6 2.5078 -6.8054 -0.6675 15 6 3.4103 -7.8482 -0.5721 16 6 4.0252 -8.1252 0.6352 17 6 3.7309 -7.3669 1.7515 18 6 2.8252 -6.3198 1.6583 19 8 2.5377 -5.5691 2.7540 20 6 3.2051 -5.9134 3.9698 21 6 2.7581 -4.9644 5.0835 22 7 1.3289 -5.1677 5.3558 23 6 0.7556 -4.0084 6.0547 24 6 -0.7437 -4.2362 6.2648 25 8 -0.9389 -5.4548 6.9874 26 6 -0.3934 -6.6047 6.3350 27 6 1.1094 -6.4008 6.1256 28 1 -0.4850 0.8400 0.0004 29 1 2.9280 -3.6340 0.2225 30 1 0.6034 -5.0452 -0.5403 31 1 0.6043 -4.8817 1.2321 32 1 2.0320 -6.5884 -1.6125 33 1 3.6384 -8.4451 -1.4428 34 1 4.7333 -8.9376 0.7062 35 1 4.2085 -7.5860 2.6950 36 1 2.9555 -6.9385 4.2435 37 1 4.2826 -5.8269 3.8298 38 1 3.3327 -5.1683 5.9870 39 1 2.9254 -3.9335 4.7714 40 1 1.2445 -3.8879 7.0214 41 1 0.9068 -3.1107 5.4552 42 1 -1.2408 -4.3031 5.2971 43 1 -1.1627 -3.4053 6.8326 44 1 -0.8803 -6.7405 5.3693 45 1 -0.5584 -7.4872 6.9531 46 1 1.5190 -7.2495 5.5778 47 1 1.6047 -6.3189 7.0931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000019832852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:25 Heat of formation + Delta-G solvation = -85.549679 kcal Electronic energy + Delta-G solvation = -29266.295654 eV Core-core repulsion = 25221.558118 eV Total energy + Delta-G solvation = -4044.737536 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.78 seconds Orbital eigenvalues (eV) -40.21271 -39.53560 -37.57065 -36.92037 -35.78303 -33.61817 -32.29281 -31.33483 -30.85916 -30.55433 -29.30534 -26.71603 -26.45014 -24.68348 -24.16187 -23.12772 -21.50297 -21.01131 -20.44460 -19.52269 -18.03426 -17.16741 -16.92685 -16.29742 -15.90932 -15.61372 -15.47808 -15.21834 -15.14104 -14.95334 -14.81849 -14.34603 -14.07347 -13.93937 -13.75954 -13.42401 -12.88438 -12.72187 -12.65055 -12.38175 -12.18862 -12.06729 -11.88182 -11.54565 -11.48979 -11.21463 -11.15318 -11.06639 -10.80563 -10.74214 -10.66359 -10.49086 -10.32546 -10.15987 -9.76476 -8.81517 -8.77300 -8.48340 -8.03085 -7.44617 -7.31902 -6.10457 -4.54129 1.42553 1.58781 3.17351 3.24453 3.28356 3.30878 3.56447 3.78830 3.86513 4.18359 4.64576 4.68584 4.75961 4.80617 4.87352 4.90042 5.01302 5.04049 5.11118 5.11317 5.14653 5.22466 5.27480 5.32968 5.44301 5.45929 5.53187 5.56329 5.66301 5.69633 5.77902 5.82076 5.88327 5.90686 6.07631 6.22773 6.45280 6.58647 6.64347 6.78200 6.81656 6.87864 6.98037 7.04566 7.51211 7.63019 8.05543 8.23224 8.44213 9.10994 9.67951 10.69577 10.90036 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007306 B = 0.004345 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3831.354133 B = 6443.332955 C = 9138.486258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.089 3.911 3 Si 0.904 3.096 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.558 3.442 10 O -0.582 6.582 11 N -0.757 5.757 12 C 0.182 3.818 13 C -0.120 4.120 14 C -0.068 4.068 15 C -0.165 4.165 16 C -0.085 4.085 17 C -0.218 4.218 18 C 0.146 3.854 19 O -0.280 6.280 20 C 0.067 3.933 21 C 0.056 3.944 22 N -0.527 5.527 23 C 0.021 3.979 24 C 0.062 3.938 25 O -0.389 6.389 26 C 0.064 3.936 27 C 0.016 3.984 28 H 0.266 0.734 29 H 0.378 0.622 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.129 0.871 33 H 0.120 0.880 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.056 0.944 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.062 0.938 45 H 0.095 0.905 46 H 0.083 0.917 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.599 -15.360 10.904 20.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.130 4.130 3 Si 0.729 3.271 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.582 4.582 8 H 0.084 0.916 9 C 0.362 3.638 10 O -0.465 6.465 11 N -0.412 5.412 12 C 0.057 3.943 13 C -0.121 4.121 14 C -0.087 4.087 15 C -0.183 4.183 16 C -0.104 4.104 17 C -0.237 4.237 18 C 0.100 3.900 19 O -0.192 6.192 20 C -0.009 4.009 21 C -0.072 4.072 22 N -0.252 5.252 23 C -0.107 4.107 24 C -0.015 4.015 25 O -0.307 6.307 26 C -0.013 4.013 27 C -0.112 4.112 28 H 0.077 0.923 29 H 0.209 0.791 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.112 0.888 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.080 0.920 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.015 -15.131 10.672 19.468 hybrid contribution 1.864 0.624 0.574 2.048 sum 7.879 -14.507 11.245 19.975 Atomic orbital electron populations 1.70035 1.06992 1.27005 1.35776 1.25672 0.94537 1.00082 0.92710 0.86428 0.80291 0.81808 0.78617 1.19892 1.20474 1.18961 1.20866 0.93835 0.89594 1.53922 0.91643 1.18172 0.87108 0.82306 0.76234 1.90591 1.14121 1.86495 1.55248 1.46083 1.08373 1.04945 1.81762 1.19585 0.91830 0.81857 1.00987 1.19618 1.01414 1.00213 0.90899 1.20992 0.96317 0.93839 0.97505 1.20979 0.99812 0.99667 0.97826 1.20845 0.98579 0.98473 0.92471 1.21156 1.03212 0.99343 1.00014 1.18921 0.93551 0.90274 0.87273 1.86341 1.63894 1.53375 1.15632 1.22761 0.95852 0.98591 0.83723 1.22169 0.87998 1.01361 0.95663 1.62080 1.14716 1.02420 1.45969 1.22800 0.96170 0.94451 0.97306 1.22701 0.94445 0.86729 0.97582 1.87951 1.79056 1.15863 1.47857 1.22624 0.91795 0.88618 0.98295 1.22847 0.98048 0.93937 0.96352 0.92276 0.79093 0.92995 0.92055 0.85342 0.86230 0.86361 0.86038 0.92451 0.91837 0.92581 0.88954 0.94248 0.88818 0.91573 0.88328 0.91987 0.88717 0.89911 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.45 11.85 55.55 0.66 -22.79 16 2 C 0.09 2.54 5.50 -17.37 -0.10 2.44 16 3 Si 0.90 20.45 29.56 -169.99 -5.03 15.42 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 7 C -0.54 -15.77 9.54 -35.63 -0.34 -16.11 16 8 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 9 C 0.56 16.39 7.74 -12.99 -0.10 16.29 16 10 O -0.58 -19.35 15.04 5.21 0.08 -19.28 16 11 N -0.76 -17.93 5.54 -62.91 -0.35 -18.28 16 12 C 0.18 3.82 5.46 -5.20 -0.03 3.79 16 13 C -0.12 -2.02 5.26 -104.48 -0.55 -2.57 16 14 C -0.07 -0.98 9.67 -39.61 -0.38 -1.36 16 15 C -0.16 -1.99 10.04 -39.56 -0.40 -2.39 16 16 C -0.09 -0.98 10.04 -39.60 -0.40 -1.38 16 17 C -0.22 -2.73 9.04 -39.43 -0.36 -3.08 16 18 C 0.15 2.26 6.66 -39.21 -0.26 2.00 16 19 O -0.28 -4.47 9.32 -19.41 -0.18 -4.65 16 20 C 0.07 0.77 4.93 37.16 0.18 0.95 16 21 C 0.06 0.63 5.38 -3.82 -0.02 0.61 16 22 N -0.53 -6.66 4.61 -234.31 -1.08 -7.74 16 23 C 0.02 0.26 5.60 -3.71 -0.02 0.23 16 24 C 0.06 0.77 7.01 37.21 0.26 1.04 16 25 O -0.39 -5.01 10.83 -35.23 -0.38 -5.39 16 26 C 0.06 0.69 7.01 37.21 0.26 0.95 16 27 C 0.02 0.17 5.47 -3.71 -0.02 0.15 16 28 H 0.27 7.36 8.29 -40.82 -0.34 7.02 16 29 H 0.38 8.22 8.44 -40.82 -0.34 7.87 16 30 H 0.05 1.12 8.00 -51.93 -0.42 0.70 16 31 H 0.06 1.42 7.85 -51.93 -0.41 1.01 16 32 H 0.13 1.72 8.04 -52.48 -0.42 1.30 16 33 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.23 6.30 -52.49 -0.33 0.90 16 36 H 0.06 0.58 6.27 -51.93 -0.33 0.25 16 37 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 38 H 0.06 0.50 7.99 -51.93 -0.41 0.08 16 39 H 0.09 1.16 7.86 -51.93 -0.41 0.75 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.09 1.25 8.02 -51.93 -0.42 0.83 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 0.77 6.74 -51.93 -0.35 0.42 16 47 H 0.04 0.39 8.13 -51.93 -0.42 -0.03 16 LS Contribution 386.70 15.07 5.83 5.83 Total: -1.00 -36.45 386.70 -9.88 -46.33 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.16 Total: 9.00 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.27 Total: 1.55 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.77 Total: -48.80 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.48 Total: -29.32 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.42 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.45 -9.88 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019832852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.222 kcal (2) G-P(sol) polarization free energy of solvation -36.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.78 seconds