Wall clock time and date at job start Wed Apr 1 2020 00:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30677 * 1 3 3 Si 1.86800 * 119.99579 * 2 1 4 4 H 1.48498 * 109.47239 * 274.99443 * 3 2 1 5 5 H 1.48496 * 109.47453 * 34.99911 * 3 2 1 6 6 H 1.48504 * 109.46651 * 154.99689 * 3 2 1 7 7 C 1.40046 * 119.99942 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99776 * 174.69360 * 7 2 1 9 9 C 1.46382 * 120.00162 * 354.69499 * 7 2 1 10 10 O 1.21681 * 119.99632 * 5.27457 * 9 7 2 11 11 N 1.34773 * 119.99953 * 185.27776 * 9 7 2 12 12 C 1.46498 * 120.00098 * 179.97438 * 11 9 7 13 13 C 1.50695 * 109.47188 * 180.02562 * 12 11 9 14 14 C 1.38168 * 120.02727 * 260.02257 * 13 12 11 15 15 C 1.38241 * 120.05941 * 179.97438 * 14 13 12 16 16 C 1.38289 * 120.10851 * 359.74204 * 15 14 13 17 17 C 1.38123 * 120.05726 * 0.51019 * 16 15 14 18 18 C 1.38711 * 120.03042 * 79.99895 * 13 12 11 19 19 O 1.35894 * 120.05464 * 0.02562 * 18 13 12 20 20 C 1.42903 * 117.00131 * 180.02562 * 19 18 13 21 21 C 1.52999 * 109.47230 * 179.97438 * 20 19 18 22 22 N 1.46904 * 109.47298 * 65.08843 * 21 20 19 23 23 C 1.47007 * 110.99958 * 199.49844 * 22 21 20 24 24 C 1.53103 * 109.25571 * 177.60524 * 23 22 21 25 25 O 1.43012 * 109.25809 * 56.85164 * 24 23 22 26 26 C 1.43019 * 113.73685 * 301.32499 * 25 24 23 27 27 C 1.47014 * 111.00089 * 75.86093 * 22 21 20 28 28 H 0.96996 * 120.00225 * 359.97438 * 1 2 3 29 29 H 0.97000 * 119.99686 * 0.02562 * 11 9 7 30 30 H 1.08996 * 109.46859 * 60.00161 * 12 11 9 31 31 H 1.09002 * 109.47139 * 300.00398 * 12 11 9 32 32 H 1.08003 * 119.96946 * 359.97438 * 14 13 12 33 33 H 1.07998 * 119.94826 * 179.97438 * 15 14 13 34 34 H 1.08001 * 119.97554 * 180.27636 * 16 15 14 35 35 H 1.07997 * 120.03294 * 179.76846 * 17 16 15 36 36 H 1.08996 * 109.46984 * 299.99775 * 20 19 18 37 37 H 1.08994 * 109.47034 * 59.99701 * 20 19 18 38 38 H 1.08998 * 109.46873 * 185.08828 * 21 20 19 39 39 H 1.08998 * 109.47192 * 305.08720 * 21 20 19 40 40 H 1.09003 * 109.50660 * 297.53716 * 23 22 21 41 41 H 1.08998 * 109.50908 * 57.67117 * 23 22 21 42 42 H 1.08995 * 109.50428 * 296.91221 * 24 23 22 43 43 H 1.09005 * 109.54071 * 176.80200 * 24 23 22 44 44 H 1.08998 * 109.50706 * 298.74165 * 26 25 24 45 45 H 1.09000 * 109.54440 * 178.63067 * 26 25 24 46 46 H 1.09003 * 109.50253 * 302.32933 * 27 22 21 47 47 H 1.08998 * 109.50462 * 62.41196 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3826 2.1075 -1.3947 5 1 1.4949 2.6199 0.8030 6 1 3.5870 1.4120 0.5918 7 6 2.0070 -1.2128 -0.0005 8 1 3.0835 -1.2148 -0.0870 9 6 1.2798 -2.4779 0.1161 10 8 0.0630 -2.4823 0.1169 11 7 1.9580 -3.6376 0.2227 12 6 1.2303 -4.9037 0.3400 13 6 2.2138 -6.0406 0.4450 14 6 2.5078 -6.8054 -0.6675 15 6 3.4103 -7.8482 -0.5721 16 6 4.0252 -8.1252 0.6352 17 6 3.7309 -7.3669 1.7515 18 6 2.8252 -6.3198 1.6583 19 8 2.5377 -5.5691 2.7540 20 6 3.2051 -5.9134 3.9698 21 6 2.7581 -4.9644 5.0835 22 7 1.3289 -5.1677 5.3558 23 6 0.7556 -4.0084 6.0547 24 6 -0.7437 -4.2362 6.2648 25 8 -0.9389 -5.4548 6.9874 26 6 -0.3934 -6.6047 6.3350 27 6 1.1094 -6.4008 6.1256 28 1 -0.4850 0.8400 0.0004 29 1 2.9280 -3.6340 0.2225 30 1 0.6034 -5.0452 -0.5403 31 1 0.6043 -4.8817 1.2321 32 1 2.0320 -6.5884 -1.6125 33 1 3.6384 -8.4451 -1.4428 34 1 4.7333 -8.9376 0.7062 35 1 4.2085 -7.5860 2.6950 36 1 2.9555 -6.9385 4.2435 37 1 4.2826 -5.8269 3.8298 38 1 3.3327 -5.1683 5.9870 39 1 2.9254 -3.9335 4.7714 40 1 1.2445 -3.8879 7.0214 41 1 0.9068 -3.1107 5.4552 42 1 -1.2408 -4.3031 5.2971 43 1 -1.1627 -3.4053 6.8326 44 1 -0.8803 -6.7405 5.3693 45 1 -0.5584 -7.4872 6.9531 46 1 1.5190 -7.2495 5.5778 47 1 1.6047 -6.3189 7.0931 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000019832852.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:20 Heat of formation + Delta-G solvation = -113.527514 kcal Electronic energy + Delta-G solvation = -29267.508864 eV Core-core repulsion = 25221.558118 eV Total energy + Delta-G solvation = -4045.950746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 25.86 seconds Orbital eigenvalues (eV) -41.28673 -40.51074 -39.27682 -38.42770 -36.75443 -35.45193 -34.47689 -32.33390 -32.14998 -31.63982 -30.40109 -28.69658 -27.43400 -26.38457 -25.08193 -24.12625 -22.61553 -22.16669 -21.61148 -21.37617 -19.43283 -18.86212 -17.85875 -17.48811 -17.28045 -16.96703 -16.65446 -16.60312 -16.13279 -15.99562 -15.92048 -15.78293 -15.69926 -15.27737 -14.94628 -14.82476 -14.35470 -14.22119 -13.74325 -13.62633 -13.31524 -13.25846 -13.19591 -13.01250 -12.85698 -12.71747 -12.61185 -12.43025 -12.25875 -12.17411 -12.01802 -11.77294 -11.63100 -11.47932 -10.92050 -10.74040 -10.06672 -9.69941 -9.43667 -9.37323 -9.03209 -8.27190 -6.83547 0.35301 0.55232 1.39029 1.40948 1.56780 2.25486 2.34172 2.49351 2.66403 2.78082 2.88246 3.39791 3.63389 3.74070 3.80877 3.87599 3.89955 3.95224 4.08409 4.12627 4.20606 4.23359 4.26212 4.32023 4.40761 4.42475 4.50977 4.56805 4.65662 4.67369 4.73100 4.73477 4.79445 4.82988 4.91553 4.95526 5.09489 5.32422 5.42764 5.55089 5.63820 5.86980 5.89121 5.91669 6.00021 6.09352 6.23186 6.29546 6.62165 6.87788 7.57692 8.51630 8.69519 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007306 B = 0.004345 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3831.354133 B = 6443.332955 C = 9138.486258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.249 1.249 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.540 3.460 10 O -0.634 6.634 11 N -0.742 5.742 12 C 0.195 3.805 13 C -0.152 4.152 14 C -0.076 4.076 15 C -0.160 4.160 16 C -0.072 4.072 17 C -0.213 4.213 18 C 0.134 3.866 19 O -0.317 6.317 20 C 0.062 3.938 21 C 0.057 3.943 22 N -0.555 5.555 23 C 0.025 3.975 24 C 0.063 3.937 25 O -0.399 6.399 26 C 0.058 3.942 27 C 0.021 3.979 28 H 0.274 0.726 29 H 0.389 0.611 30 H 0.035 0.965 31 H 0.027 0.973 32 H 0.128 0.872 33 H 0.150 0.850 34 H 0.159 0.841 35 H 0.151 0.849 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.055 0.945 41 H 0.072 0.928 42 H 0.039 0.961 43 H 0.114 0.886 44 H 0.044 0.956 45 H 0.124 0.876 46 H 0.097 0.903 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.262 -16.880 11.780 23.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.172 1.172 7 C -0.609 4.609 8 H 0.102 0.898 9 C 0.344 3.656 10 O -0.522 6.522 11 N -0.395 5.395 12 C 0.070 3.930 13 C -0.153 4.153 14 C -0.094 4.094 15 C -0.178 4.178 16 C -0.090 4.090 17 C -0.231 4.231 18 C 0.087 3.913 19 O -0.230 6.230 20 C -0.013 4.013 21 C -0.070 4.070 22 N -0.281 5.281 23 C -0.103 4.103 24 C -0.014 4.014 25 O -0.318 6.318 26 C -0.019 4.019 27 C -0.106 4.106 28 H 0.084 0.916 29 H 0.222 0.778 30 H 0.053 0.947 31 H 0.045 0.955 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.177 0.823 35 H 0.169 0.831 36 H 0.094 0.906 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.057 0.943 43 H 0.132 0.868 44 H 0.062 0.938 45 H 0.141 0.859 46 H 0.115 0.885 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.729 -16.708 11.549 22.520 hybrid contribution 0.729 0.949 0.304 1.234 sum 10.457 -15.759 11.853 22.320 Atomic orbital electron populations 1.70207 1.09573 1.28856 1.36538 1.26967 0.95484 1.04849 0.91165 0.85022 0.78892 0.75134 0.79311 1.18553 1.19591 1.17234 1.21375 0.94859 0.90216 1.54482 0.89815 1.18625 0.86761 0.84171 0.76030 1.90539 1.16277 1.87638 1.57753 1.45777 1.08773 1.04873 1.80074 1.19376 0.92603 0.82563 0.98414 1.19313 1.02667 1.00153 0.93189 1.21089 0.97128 0.94502 0.96702 1.21320 0.98412 0.98602 0.99495 1.21359 0.97837 0.98383 0.91385 1.21473 1.01923 0.97890 1.01833 1.19065 0.94300 0.91319 0.86573 1.86307 1.65155 1.54460 1.17060 1.23032 0.96713 0.99463 0.82058 1.22202 0.87728 1.00220 0.96894 1.62055 1.15802 1.03193 1.47059 1.22692 0.96138 0.93929 0.97581 1.22680 0.94605 0.87482 0.96606 1.87930 1.79483 1.16288 1.48052 1.22826 0.92179 0.88873 0.98021 1.22863 0.97599 0.93274 0.96907 0.91606 0.77821 0.94669 0.95492 0.85454 0.83193 0.82332 0.83107 0.90573 0.89721 0.89481 0.91283 0.92654 0.90928 0.94259 0.86786 0.93785 0.85866 0.88500 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.08 11.85 21.84 0.26 -51.83 16 2 C 0.03 1.74 5.50 85.30 0.47 2.21 16 3 Si 1.00 42.17 29.56 68.60 2.03 44.20 16 4 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.08 16 7 C -0.57 -34.10 9.54 24.83 0.24 -33.86 16 8 H 0.08 4.51 7.85 -2.91 -0.02 4.48 16 9 C 0.54 33.54 7.74 86.36 0.67 34.21 16 10 O -0.63 -45.21 15.04 -4.29 -0.06 -45.28 16 11 N -0.74 -37.25 5.54 -471.16 -2.61 -39.86 16 12 C 0.19 8.85 5.46 85.63 0.47 9.31 16 13 C -0.15 -5.25 5.26 -19.77 -0.10 -5.36 16 14 C -0.08 -2.14 9.67 22.25 0.22 -1.92 16 15 C -0.16 -3.36 10.04 22.28 0.22 -3.14 16 16 C -0.07 -1.32 10.04 22.25 0.22 -1.09 16 17 C -0.21 -4.60 9.04 22.37 0.20 -4.39 16 18 C 0.13 4.06 6.66 22.51 0.15 4.21 16 19 O -0.32 -10.26 9.32 -92.35 -0.86 -11.12 16 20 C 0.06 1.33 4.93 71.98 0.36 1.69 16 21 C 0.06 1.25 5.38 86.30 0.46 1.71 16 22 N -0.56 -14.17 4.61 -895.21 -4.12 -18.29 16 23 C 0.02 0.63 5.60 86.32 0.48 1.12 16 24 C 0.06 1.66 7.01 72.02 0.50 2.17 16 25 O -0.40 -10.32 10.83 -148.98 -1.61 -11.94 16 26 C 0.06 1.22 7.01 72.01 0.50 1.73 16 27 C 0.02 0.41 5.47 86.31 0.47 0.88 16 28 H 0.27 15.65 8.29 -92.71 -0.77 14.88 16 29 H 0.39 17.59 8.44 -92.71 -0.78 16.81 16 30 H 0.03 1.67 8.00 -2.39 -0.02 1.65 16 31 H 0.03 1.38 7.85 -2.39 -0.02 1.36 16 32 H 0.13 3.49 8.04 -2.91 -0.02 3.46 16 33 H 0.15 2.24 8.06 -2.91 -0.02 2.21 16 34 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.15 2.33 6.30 -2.91 -0.02 2.31 16 36 H 0.08 1.31 6.27 -2.39 -0.01 1.30 16 37 H 0.08 1.42 7.66 -2.39 -0.02 1.40 16 38 H 0.09 1.34 7.99 -2.39 -0.02 1.32 16 39 H 0.07 1.80 7.86 -2.39 -0.02 1.79 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.07 2.12 8.02 -2.39 -0.02 2.10 16 42 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.11 2.54 8.14 -2.38 -0.02 2.52 16 44 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.12 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.10 1.58 6.74 -2.39 -0.02 1.57 16 47 H 0.05 0.91 8.13 -2.39 -0.02 0.89 16 Total: -1.00 -85.48 386.70 -1.25 -86.73 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: 0.20 Total: 37.91 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.54 Total: 9.46 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -6.48 Total: -109.98 kcal Atomic # 8 Polarization: -65.79 SS G_CDS: -2.54 Total: -68.33 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -85.48 -1.25 -86.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000019832852.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.793 kcal (2) G-P(sol) polarization free energy of solvation -85.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 25.86 seconds