Wall clock time and date at job start Tue Mar 31 2020 23:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86796 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47136 * 275.41642 * 3 2 1 5 5 H 1.48505 * 109.47375 * 35.41432 * 3 2 1 6 6 H 1.48503 * 109.47249 * 155.41469 * 3 2 1 7 7 C 1.39885 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00275 * 341.71937 * 7 2 1 9 9 C 1.41212 * 120.00033 * 161.71519 * 7 2 1 10 10 C 1.40832 * 120.18071 * 330.16990 * 9 7 2 11 11 C 1.36441 * 119.81329 * 179.97438 * 10 9 7 12 12 C 1.39310 * 120.18076 * 359.97438 * 11 10 9 13 13 O 1.35677 * 119.81255 * 180.02562 * 12 11 10 14 14 C 1.42900 * 116.99905 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47232 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47006 * 305.00042 * 15 14 13 17 17 O 1.42899 * 109.46998 * 64.99980 * 15 14 13 18 18 C 1.53000 * 109.47368 * 185.00263 * 15 14 13 19 19 N 1.46902 * 109.47446 * 179.97438 * 18 15 14 20 20 C 1.47445 * 110.99744 * 69.87132 * 19 18 15 21 21 C 1.54321 * 107.23225 * 123.25993 * 20 19 18 22 22 C 1.55143 * 103.01720 * 22.28316 * 21 20 19 23 23 C 1.47839 * 111.00361 * 190.71332 * 19 18 15 24 24 H 1.09000 * 110.37353 * 332.46995 * 23 19 18 25 25 C 1.50704 * 110.37067 * 94.80521 * 23 19 18 26 26 N 1.34777 * 119.99805 * 180.02562 * 25 23 19 27 27 O 1.21281 * 120.00343 * 0.02562 * 25 23 19 28 28 C 1.39309 * 120.37001 * 0.27928 * 12 11 10 29 29 C 1.36443 * 120.18201 * 359.44185 * 28 12 11 30 30 H 0.96999 * 119.99971 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.09220 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.90818 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.46801 * 60.00353 * 14 13 12 34 34 H 1.08994 * 109.47465 * 300.00153 * 14 13 12 35 35 H 0.96703 * 114.00096 * 60.00082 * 17 15 14 36 36 H 1.08999 * 109.46877 * 299.99858 * 18 15 14 37 37 H 1.09003 * 109.47291 * 59.99626 * 18 15 14 38 38 H 1.08997 * 109.89258 * 242.66796 * 20 19 18 39 39 H 1.09000 * 109.88814 * 3.69335 * 20 19 18 40 40 H 1.09000 * 110.70469 * 140.66584 * 21 20 19 41 41 H 1.09003 * 110.70199 * 263.89878 * 21 20 19 42 42 H 1.09000 * 110.99089 * 82.44019 * 22 21 20 43 43 H 1.09000 * 110.98316 * 206.21864 * 22 21 20 44 44 H 0.96998 * 120.00297 * 0.02562 * 26 25 23 45 45 H 0.97003 * 119.99649 * 180.02562 * 26 25 23 46 46 H 1.07999 * 119.90839 * 179.70086 * 28 12 11 47 47 H 1.08001 * 120.09337 * 180.27188 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3758 2.1125 -1.3938 5 1 1.5021 2.6170 0.8113 6 1 3.5929 1.4099 0.5825 7 6 2.0083 -1.2114 0.0005 8 1 1.5092 -2.1231 0.2943 9 6 3.3669 -1.2425 -0.3831 10 6 3.8605 -0.3106 -1.3166 11 6 5.1747 -0.3470 -1.6816 12 6 6.0276 -1.3023 -1.1331 13 8 7.3332 -1.3314 -1.5010 14 6 8.1537 -2.3362 -0.9018 15 6 9.5826 -2.2124 -1.4346 16 1 9.5692 -2.2547 -2.5236 17 8 10.1419 -0.9668 -1.0131 18 6 10.4315 -3.3630 -0.8900 19 7 11.8033 -3.2445 -1.4020 20 6 12.4943 -2.0897 -0.7994 21 6 13.7756 -2.6243 -0.1255 22 6 14.0298 -3.9617 -0.8697 23 6 12.5849 -4.4651 -1.1108 24 1 12.2006 -4.9577 -0.2176 25 6 12.5465 -5.4057 -2.2877 26 7 13.1982 -6.5841 -2.2300 27 8 11.9293 -5.1024 -3.2866 28 6 5.5462 -2.2310 -0.2131 29 6 4.2360 -2.2046 0.1668 30 1 -0.4850 0.8400 0.0004 31 1 3.2006 0.4308 -1.7423 32 1 5.5549 0.3671 -2.3970 33 1 7.7583 -3.3220 -1.1470 34 1 8.1572 -2.2050 0.1802 35 1 10.1851 -0.8598 -0.0529 36 1 10.4449 -3.3207 0.1991 37 1 10.0049 -4.3131 -1.2114 38 1 12.7558 -1.3685 -1.5737 39 1 11.8505 -1.6188 -0.0564 40 1 14.6065 -1.9353 -0.2764 41 1 13.6075 -2.8003 0.9370 42 1 14.5465 -3.7909 -1.8141 43 1 14.5868 -4.6576 -0.2424 44 1 13.6916 -6.8269 -1.4309 45 1 13.1739 -7.1893 -2.9876 46 1 6.2130 -2.9713 0.2037 47 1 3.8654 -2.9225 0.8834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053399809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:33 Heat of formation + Delta-G solvation = -95.450045 kcal Electronic energy + Delta-G solvation = -28325.470659 eV Core-core repulsion = 24280.303811 eV Total energy + Delta-G solvation = -4045.166848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.27 seconds Orbital eigenvalues (eV) -40.56452 -39.22157 -38.45530 -37.15523 -36.09615 -34.01115 -33.32352 -32.64313 -30.43178 -29.90719 -29.70970 -29.25353 -25.71371 -24.42368 -23.24560 -22.37464 -21.43227 -20.98155 -20.56682 -20.20017 -17.85377 -17.61197 -17.40713 -17.24192 -16.49517 -16.29813 -16.04546 -15.30843 -15.19235 -14.96355 -14.56064 -14.32259 -14.17695 -13.81015 -13.63264 -13.42062 -13.20942 -13.01729 -12.79261 -12.68839 -12.38370 -12.20277 -12.04151 -11.79485 -11.71221 -11.55053 -11.15157 -11.08176 -10.89395 -10.72220 -10.28717 -10.14960 -10.12762 -9.99457 -9.92398 -9.84903 -9.46462 -9.05615 -8.63046 -7.89656 -7.17366 -6.89379 -4.36351 2.37364 2.59278 2.62235 2.91052 3.14978 3.24130 3.35636 3.49613 3.96560 4.02382 4.14717 4.20400 4.29765 4.49073 4.51591 4.63539 4.76699 4.87976 4.94813 5.05838 5.08259 5.21647 5.26332 5.34423 5.37393 5.41736 5.46191 5.54498 5.63680 5.84822 5.90578 6.00581 6.08749 6.39387 6.43027 6.54935 6.61537 6.69446 6.78348 6.98636 7.02096 7.26699 7.38518 7.55038 7.58542 7.82360 7.94809 8.01460 8.30722 8.42274 8.71065 8.84903 10.13725 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.002096 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.014460 B =13355.763144 C =13903.190066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.083 3.917 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.291 1.291 6 H -0.245 1.245 7 C -0.450 4.450 8 H 0.089 0.911 9 C 0.071 3.929 10 C -0.207 4.207 11 C -0.096 4.096 12 C -0.008 4.008 13 O -0.314 6.314 14 C 0.039 3.961 15 C 0.118 3.882 16 H 0.117 0.883 17 O -0.544 6.544 18 C 0.026 3.974 19 N -0.499 5.499 20 C 0.050 3.950 21 C -0.146 4.146 22 C -0.117 4.117 23 C 0.050 3.950 24 H 0.080 0.920 25 C 0.521 3.479 26 N -0.861 5.861 27 O -0.513 6.513 28 C -0.158 4.158 29 C -0.180 4.180 30 H 0.284 0.716 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.052 0.948 35 H 0.365 0.635 36 H 0.042 0.958 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.398 0.602 45 H 0.401 0.599 46 H 0.098 0.902 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.494 -9.328 2.866 30.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.218 1.218 6 H -0.168 1.168 7 C -0.479 4.479 8 H 0.107 0.893 9 C 0.068 3.932 10 C -0.226 4.226 11 C -0.115 4.115 12 C -0.052 4.052 13 O -0.230 6.230 14 C -0.038 4.038 15 C 0.058 3.942 16 H 0.135 0.865 17 O -0.349 6.349 18 C -0.102 4.102 19 N -0.223 5.223 20 C -0.077 4.077 21 C -0.184 4.184 22 C -0.156 4.156 23 C -0.062 4.062 24 H 0.098 0.902 25 C 0.304 3.696 26 N -0.426 5.426 27 O -0.386 6.386 28 C -0.176 4.176 29 C -0.199 4.199 30 H 0.094 0.906 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.213 0.787 36 H 0.060 0.940 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.100 0.900 43 H 0.099 0.901 44 H 0.226 0.774 45 H 0.232 0.768 46 H 0.116 0.884 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 27.822 -8.554 0.993 29.124 hybrid contribution 0.269 -0.277 1.771 1.812 sum 28.091 -8.831 2.763 29.575 Atomic orbital electron populations 1.69723 1.07998 1.30065 1.36041 1.26120 0.94708 1.01601 0.91054 0.86363 0.81293 0.79980 0.78897 1.19601 1.21844 1.16819 1.19354 0.93140 0.96071 1.39334 0.89308 1.17722 0.93326 0.91578 0.90586 1.20671 0.94712 1.04271 1.02939 1.19706 0.92816 0.98017 1.00938 1.18546 0.82604 1.00991 1.03029 1.85903 1.18609 1.52724 1.65753 1.23130 0.91150 0.92460 0.97103 1.21870 0.88060 0.82699 1.01532 0.86526 1.86739 1.84054 1.37387 1.26708 1.22814 0.89883 1.00449 0.97083 1.62947 1.00894 1.01005 1.57498 1.22997 0.93422 0.92941 0.98360 1.22889 0.99225 0.96766 0.99533 1.22665 0.93900 0.97435 1.01578 1.22504 0.95822 0.92553 0.95292 0.90211 1.20444 0.78394 0.81621 0.89140 1.43877 1.56094 1.20982 1.21668 1.90784 1.40920 1.74408 1.32514 1.20537 0.96990 0.99509 1.00596 1.20624 0.92407 1.03498 1.03404 0.90595 0.87491 0.87849 0.92220 0.93019 0.78734 0.94036 0.89653 0.89685 0.91395 0.90195 0.91237 0.90038 0.90126 0.77411 0.76768 0.88368 0.87929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.04 13.93 55.54 0.77 -21.27 16 2 C 0.08 2.22 5.40 -17.34 -0.09 2.12 16 3 Si 0.91 21.21 24.52 -169.99 -4.17 17.04 16 4 H -0.27 -6.13 6.70 56.52 0.38 -5.75 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.24 -5.87 6.87 56.52 0.39 -5.49 16 7 C -0.45 -12.35 9.56 -37.84 -0.36 -12.72 16 8 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 9 C 0.07 1.83 5.10 -106.81 -0.55 1.28 16 10 C -0.21 -5.15 7.12 -39.25 -0.28 -5.42 16 11 C -0.10 -2.24 9.92 -39.83 -0.40 -2.63 16 12 C -0.01 -0.19 6.71 -38.78 -0.26 -0.45 16 13 O -0.31 -6.24 10.09 -23.59 -0.24 -6.48 16 14 C 0.04 0.57 4.36 37.16 0.16 0.73 16 15 C 0.12 1.51 3.50 -26.73 -0.09 1.41 16 16 H 0.12 1.77 8.14 -51.93 -0.42 1.35 16 17 O -0.54 -6.85 10.92 -40.09 -0.44 -7.29 16 18 C 0.03 0.26 4.46 -3.82 -0.02 0.25 16 19 N -0.50 -5.01 4.34 -224.75 -0.97 -5.98 16 20 C 0.05 0.42 5.52 -2.83 -0.02 0.40 16 21 C -0.15 -0.81 6.94 -24.91 -0.17 -0.98 16 22 C -0.12 -0.62 6.47 -24.59 -0.16 -0.78 16 23 C 0.05 0.38 2.80 -67.34 -0.19 0.19 16 24 H 0.08 0.46 7.81 -51.93 -0.41 0.06 16 25 C 0.52 4.86 7.46 -10.98 -0.08 4.78 16 26 N -0.86 -4.20 8.85 31.22 0.28 -3.92 16 27 O -0.51 -7.54 17.32 5.56 0.10 -7.45 16 28 C -0.16 -3.36 8.96 -39.83 -0.36 -3.72 16 29 C -0.18 -4.23 9.74 -39.25 -0.38 -4.61 16 30 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 31 H 0.11 2.64 4.73 -52.49 -0.25 2.39 16 32 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 33 H 0.06 0.85 7.64 -51.93 -0.40 0.46 16 34 H 0.05 0.70 7.66 -51.93 -0.40 0.30 16 35 H 0.37 3.33 7.93 45.56 0.36 3.69 16 36 H 0.04 0.34 7.96 -51.93 -0.41 -0.08 16 37 H 0.09 0.90 8.07 -51.93 -0.42 0.48 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 0.52 5.19 -51.93 -0.27 0.25 16 40 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.08 0.51 8.05 -51.93 -0.42 0.10 16 43 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 44 H 0.40 0.64 8.83 -40.82 -0.36 0.28 16 45 H 0.40 1.76 8.93 -40.82 -0.36 1.39 16 46 H 0.10 1.77 6.27 -52.49 -0.33 1.44 16 47 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -34.18 376.93 -8.45 -42.63 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -6.21 Total: 7.18 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -3.24 Total: -20.13 kcal Atomic # 7 Polarization: -31.25 SS G_CDS: 0.08 Total: -31.18 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.58 Total: -21.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.17 Total: 17.04 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.18 -8.45 -42.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053399809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.822 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.27 seconds