Wall clock time and date at job start Tue Mar 31 2020 23:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86796 * 119.99909 * 2 1 4 4 H 1.48499 * 109.47136 * 275.41642 * 3 2 1 5 5 H 1.48505 * 109.47375 * 35.41432 * 3 2 1 6 6 H 1.48503 * 109.47249 * 155.41469 * 3 2 1 7 7 C 1.39885 * 120.00097 * 179.97438 * 2 1 3 8 8 H 1.08006 * 120.00275 * 341.71937 * 7 2 1 9 9 C 1.41212 * 120.00033 * 161.71519 * 7 2 1 10 10 C 1.40832 * 120.18071 * 330.16990 * 9 7 2 11 11 C 1.36441 * 119.81329 * 179.97438 * 10 9 7 12 12 C 1.39310 * 120.18076 * 359.97438 * 11 10 9 13 13 O 1.35677 * 119.81255 * 180.02562 * 12 11 10 14 14 C 1.42900 * 116.99905 * 180.02562 * 13 12 11 15 15 C 1.52998 * 109.47232 * 180.02562 * 14 13 12 16 16 H 1.08999 * 109.47006 * 305.00042 * 15 14 13 17 17 O 1.42899 * 109.46998 * 64.99980 * 15 14 13 18 18 C 1.53000 * 109.47368 * 185.00263 * 15 14 13 19 19 N 1.46902 * 109.47446 * 179.97438 * 18 15 14 20 20 C 1.47445 * 110.99744 * 69.87132 * 19 18 15 21 21 C 1.54321 * 107.23225 * 123.25993 * 20 19 18 22 22 C 1.55143 * 103.01720 * 22.28316 * 21 20 19 23 23 C 1.47839 * 111.00361 * 190.71332 * 19 18 15 24 24 H 1.09000 * 110.37353 * 332.46995 * 23 19 18 25 25 C 1.50704 * 110.37067 * 94.80521 * 23 19 18 26 26 N 1.34777 * 119.99805 * 180.02562 * 25 23 19 27 27 O 1.21281 * 120.00343 * 0.02562 * 25 23 19 28 28 C 1.39309 * 120.37001 * 0.27928 * 12 11 10 29 29 C 1.36443 * 120.18201 * 359.44185 * 28 12 11 30 30 H 0.96999 * 119.99971 * 359.97438 * 1 2 3 31 31 H 1.07997 * 120.09220 * 359.97438 * 10 9 7 32 32 H 1.08000 * 119.90818 * 180.02562 * 11 10 9 33 33 H 1.09002 * 109.46801 * 60.00353 * 14 13 12 34 34 H 1.08994 * 109.47465 * 300.00153 * 14 13 12 35 35 H 0.96703 * 114.00096 * 60.00082 * 17 15 14 36 36 H 1.08999 * 109.46877 * 299.99858 * 18 15 14 37 37 H 1.09003 * 109.47291 * 59.99626 * 18 15 14 38 38 H 1.08997 * 109.89258 * 242.66796 * 20 19 18 39 39 H 1.09000 * 109.88814 * 3.69335 * 20 19 18 40 40 H 1.09000 * 110.70469 * 140.66584 * 21 20 19 41 41 H 1.09003 * 110.70199 * 263.89878 * 21 20 19 42 42 H 1.09000 * 110.99089 * 82.44019 * 22 21 20 43 43 H 1.09000 * 110.98316 * 206.21864 * 22 21 20 44 44 H 0.96998 * 120.00297 * 0.02562 * 26 25 23 45 45 H 0.97003 * 119.99649 * 180.02562 * 26 25 23 46 46 H 1.07999 * 119.90839 * 179.70086 * 28 12 11 47 47 H 1.08001 * 120.09337 * 180.27188 * 29 28 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.3758 2.1125 -1.3938 5 1 1.5021 2.6170 0.8113 6 1 3.5929 1.4099 0.5825 7 6 2.0083 -1.2114 0.0005 8 1 1.5092 -2.1231 0.2943 9 6 3.3669 -1.2425 -0.3831 10 6 3.8605 -0.3106 -1.3166 11 6 5.1747 -0.3470 -1.6816 12 6 6.0276 -1.3023 -1.1331 13 8 7.3332 -1.3314 -1.5010 14 6 8.1537 -2.3362 -0.9018 15 6 9.5826 -2.2124 -1.4346 16 1 9.5692 -2.2547 -2.5236 17 8 10.1419 -0.9668 -1.0131 18 6 10.4315 -3.3630 -0.8900 19 7 11.8033 -3.2445 -1.4020 20 6 12.4943 -2.0897 -0.7994 21 6 13.7756 -2.6243 -0.1255 22 6 14.0298 -3.9617 -0.8697 23 6 12.5849 -4.4651 -1.1108 24 1 12.2006 -4.9577 -0.2176 25 6 12.5465 -5.4057 -2.2877 26 7 13.1982 -6.5841 -2.2300 27 8 11.9293 -5.1024 -3.2866 28 6 5.5462 -2.2310 -0.2131 29 6 4.2360 -2.2046 0.1668 30 1 -0.4850 0.8400 0.0004 31 1 3.2006 0.4308 -1.7423 32 1 5.5549 0.3671 -2.3970 33 1 7.7583 -3.3220 -1.1470 34 1 8.1572 -2.2050 0.1802 35 1 10.1851 -0.8598 -0.0529 36 1 10.4449 -3.3207 0.1991 37 1 10.0049 -4.3131 -1.2114 38 1 12.7558 -1.3685 -1.5737 39 1 11.8505 -1.6188 -0.0564 40 1 14.6065 -1.9353 -0.2764 41 1 13.6075 -2.8003 0.9370 42 1 14.5465 -3.7909 -1.8141 43 1 14.5868 -4.6576 -0.2424 44 1 13.6916 -6.8269 -1.4309 45 1 13.1739 -7.1893 -2.9876 46 1 6.2130 -2.9713 0.2037 47 1 3.8654 -2.9225 0.8834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053399809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:28 Heat of formation + Delta-G solvation = -124.016248 kcal Electronic energy + Delta-G solvation = -28326.709382 eV Core-core repulsion = 24280.303811 eV Total energy + Delta-G solvation = -4046.405571 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -41.26411 -40.71142 -39.43770 -38.43770 -37.36596 -35.25364 -34.64915 -33.37368 -32.00494 -31.71888 -30.51525 -30.24325 -26.95921 -26.03012 -24.04454 -23.45938 -22.55576 -22.44335 -21.82284 -20.83409 -19.39093 -19.00211 -18.38326 -18.05739 -17.48437 -17.36817 -17.11872 -16.70459 -16.21755 -16.06725 -15.75245 -15.49220 -15.35446 -15.08191 -14.86350 -14.57438 -14.26834 -14.26493 -14.16812 -13.89720 -13.70801 -13.57992 -13.28304 -12.76798 -12.68713 -12.65981 -12.34346 -12.23457 -12.04035 -11.97949 -11.80966 -11.66407 -11.60311 -11.28876 -10.95439 -10.89529 -10.78322 -10.58449 -9.72875 -9.25960 -9.02552 -8.87323 -6.38964 0.73843 0.76168 1.27227 1.38876 1.48777 1.71123 2.12991 2.20388 2.53944 2.57759 3.17144 3.41326 3.46646 3.61328 3.67477 3.90028 3.98066 4.04264 4.06045 4.17142 4.21218 4.23606 4.29180 4.30981 4.40547 4.57648 4.60036 4.62927 4.79697 4.81944 4.93682 4.94783 5.02988 5.06231 5.14703 5.15778 5.36910 5.40041 5.52987 5.70864 5.87110 5.87913 6.00734 6.04918 6.09519 6.30879 6.57510 6.58171 6.78662 6.81216 6.93269 7.45840 8.21619 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.026016 B = 0.002096 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.014460 B =13355.763144 C =13903.190066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.047 3.953 3 Si 0.960 3.040 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.255 1.255 7 C -0.483 4.483 8 H 0.058 0.942 9 C 0.046 3.954 10 C -0.213 4.213 11 C -0.115 4.115 12 C 0.012 3.988 13 O -0.328 6.328 14 C 0.031 3.969 15 C 0.129 3.871 16 H 0.084 0.916 17 O -0.557 6.557 18 C 0.037 3.963 19 N -0.530 5.530 20 C 0.048 3.952 21 C -0.138 4.138 22 C -0.111 4.111 23 C 0.051 3.949 24 H 0.106 0.894 25 C 0.516 3.484 26 N -0.838 5.838 27 O -0.580 6.580 28 C -0.154 4.154 29 C -0.182 4.182 30 H 0.292 0.708 31 H 0.104 0.896 32 H 0.119 0.881 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.382 0.618 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.417 0.583 45 H 0.405 0.595 46 H 0.139 0.861 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.190 -10.042 4.579 34.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.167 4.167 3 Si 0.784 3.216 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.178 1.178 7 C -0.513 4.513 8 H 0.076 0.924 9 C 0.043 3.957 10 C -0.232 4.232 11 C -0.134 4.134 12 C -0.032 4.032 13 O -0.244 6.244 14 C -0.045 4.045 15 C 0.069 3.931 16 H 0.102 0.898 17 O -0.365 6.365 18 C -0.092 4.092 19 N -0.255 5.255 20 C -0.079 4.079 21 C -0.176 4.176 22 C -0.149 4.149 23 C -0.061 4.061 24 H 0.124 0.876 25 C 0.300 3.700 26 N -0.404 5.404 27 O -0.458 6.458 28 C -0.172 4.172 29 C -0.202 4.202 30 H 0.102 0.898 31 H 0.121 0.879 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.104 0.896 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.134 0.866 44 H 0.249 0.751 45 H 0.236 0.764 46 H 0.157 0.843 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 31.573 -9.313 2.749 33.033 hybrid contribution -0.576 -0.214 1.183 1.333 sum 30.998 -9.527 3.932 32.666 Atomic orbital electron populations 1.69748 1.08980 1.31225 1.38073 1.26745 0.95314 1.03965 0.90654 0.85569 0.79643 0.77038 0.79383 1.18656 1.20203 1.17842 1.19332 0.94388 0.95605 1.42024 0.92354 1.17878 0.93138 0.93115 0.91549 1.20718 0.95504 1.04132 1.02850 1.19948 0.92563 0.99162 1.01703 1.18732 0.83593 0.99600 1.01290 1.85917 1.17637 1.54484 1.66336 1.23511 0.91157 0.91516 0.98337 1.21658 0.87607 0.84076 0.99802 0.89828 1.86714 1.83921 1.37418 1.28425 1.22646 0.89590 0.98487 0.98435 1.62777 1.01267 1.02585 1.58863 1.22949 0.94965 0.92223 0.97790 1.22861 0.97789 0.96722 1.00233 1.22697 0.92600 0.98039 1.01537 1.22608 0.96943 0.91459 0.95089 0.87641 1.20930 0.77661 0.82566 0.88867 1.43706 1.54568 1.19544 1.22540 1.90759 1.44070 1.76004 1.34949 1.20859 0.96586 0.99899 0.99898 1.20871 0.93162 1.02869 1.03267 0.89752 0.87850 0.86253 0.91357 0.90633 0.76814 0.91187 0.90312 0.92397 0.90705 0.89644 0.89308 0.91569 0.86600 0.75131 0.76352 0.84336 0.86873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.76 13.93 21.82 0.30 -47.46 16 2 C 0.05 2.57 5.40 85.23 0.46 3.03 16 3 Si 0.96 44.05 24.52 68.60 1.68 45.74 16 4 H -0.26 -11.47 6.70 99.48 0.67 -10.80 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.25 -11.95 6.87 99.48 0.68 -11.27 16 7 C -0.48 -27.57 9.56 23.40 0.22 -27.35 16 8 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 9 C 0.05 2.38 5.10 -21.28 -0.11 2.27 16 10 C -0.21 -10.55 7.12 22.48 0.16 -10.39 16 11 C -0.12 -5.21 9.92 22.11 0.22 -4.99 16 12 C 0.01 0.50 6.71 22.79 0.15 0.65 16 13 O -0.33 -12.22 10.09 -85.31 -0.86 -13.08 16 14 C 0.03 0.82 4.36 71.98 0.31 1.13 16 15 C 0.13 3.06 3.50 30.59 0.11 3.17 16 16 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 17 O -0.56 -13.01 10.92 -144.34 -1.58 -14.58 16 18 C 0.04 0.65 4.46 86.30 0.38 1.04 16 19 N -0.53 -9.73 4.34 -864.99 -3.75 -13.48 16 20 C 0.05 0.70 5.52 86.65 0.48 1.18 16 21 C -0.14 -1.06 6.94 31.78 0.22 -0.84 16 22 C -0.11 -0.79 6.47 31.98 0.21 -0.58 16 23 C 0.05 0.62 2.80 44.64 0.12 0.74 16 24 H 0.11 0.76 7.81 -2.39 -0.02 0.74 16 25 C 0.52 8.88 7.46 87.66 0.65 9.53 16 26 N -0.84 -6.26 8.85 -173.53 -1.54 -7.80 16 27 O -0.58 -17.22 17.32 -3.03 -0.05 -17.27 16 28 C -0.15 -6.14 8.96 22.11 0.20 -5.94 16 29 C -0.18 -8.38 9.74 22.49 0.22 -8.16 16 30 H 0.29 14.73 8.30 -92.71 -0.77 13.96 16 31 H 0.10 5.11 4.73 -2.91 -0.01 5.10 16 32 H 0.12 4.93 8.06 -2.91 -0.02 4.90 16 33 H 0.07 1.72 7.64 -2.39 -0.02 1.71 16 34 H 0.08 1.68 7.66 -2.39 -0.02 1.66 16 35 H 0.38 5.82 7.93 -74.06 -0.59 5.24 16 36 H 0.07 0.83 7.96 -2.39 -0.02 0.81 16 37 H 0.08 1.49 8.07 -2.39 -0.02 1.47 16 38 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 0.95 5.19 -2.39 -0.01 0.93 16 40 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 42 H 0.07 0.70 8.05 -2.39 -0.02 0.68 16 43 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 44 H 0.42 -0.12 8.83 -92.71 -0.82 -0.94 16 45 H 0.41 2.85 8.93 -92.71 -0.83 2.02 16 46 H 0.14 4.36 6.27 -2.91 -0.02 4.35 16 47 H 0.11 4.87 8.06 -2.91 -0.02 4.84 16 Total: -1.00 -77.94 376.93 -3.04 -80.99 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: -1.27 Total: 22.44 kcal Atomic # 6 Polarization: -39.52 SS G_CDS: 4.02 Total: -35.50 kcal Atomic # 7 Polarization: -63.75 SS G_CDS: -4.98 Total: -68.74 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -2.49 Total: -44.93 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 1.68 Total: 45.74 kcal Total: -77.94 -3.04 -80.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053399809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.030 kcal (2) G-P(sol) polarization free energy of solvation -77.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds