Wall clock time and date at job start Tue Mar 31 2020 23:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48495 * 109.47336 * 239.99899 * 3 2 1 5 5 H 1.48493 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46702 * 120.00137 * 3 2 1 7 7 C 1.39891 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00095 * 175.55789 * 7 2 1 9 9 C 1.41155 * 120.00244 * 355.55608 * 7 2 1 10 10 C 1.40868 * 120.16663 * 214.78641 * 9 7 2 11 11 C 1.36370 * 119.82856 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.17014 * 359.96611 * 11 10 9 13 13 N 1.39240 * 119.83002 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00501 * 35.30087 * 13 12 11 15 15 O 1.21585 * 119.99523 * 355.70457 * 14 13 12 16 16 N 1.34777 * 120.00268 * 175.70492 * 14 13 12 17 17 C 1.46495 * 119.99753 * 179.72158 * 16 14 13 18 18 C 1.53001 * 109.47119 * 180.02562 * 17 16 14 19 19 O 1.42897 * 109.47096 * 65.00209 * 18 17 16 20 20 C 1.42907 * 114.00406 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47383 * 180.02562 * 20 19 18 22 22 H 1.09000 * 110.75388 * 54.29123 * 21 20 19 23 23 C 1.55304 * 110.84814 * 177.77120 * 21 20 19 24 24 C 1.55200 * 100.82752 * 152.17804 * 23 21 20 25 25 O 1.43652 * 105.25726 * 323.81394 * 24 23 21 26 26 C 1.43228 * 109.97405 * 24.28687 * 25 24 23 27 27 C 1.39477 * 120.33015 * 0.30630 * 12 11 10 28 28 C 1.36374 * 120.16816 * 359.44031 * 27 12 11 29 29 H 0.97001 * 119.99582 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.08283 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.91401 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99554 * 215.29518 * 13 12 11 33 33 H 0.96997 * 120.00148 * 0.02562 * 16 14 13 34 34 H 1.08998 * 109.47703 * 300.00468 * 17 16 14 35 35 H 1.09000 * 109.47172 * 60.00404 * 17 16 14 36 36 H 1.09000 * 109.47762 * 185.00270 * 18 17 16 37 37 H 1.09004 * 109.47005 * 305.00322 * 18 17 16 38 38 H 1.08998 * 109.46652 * 299.99871 * 20 19 18 39 39 H 1.08998 * 109.46646 * 59.99747 * 20 19 18 40 40 H 1.08996 * 111.12151 * 270.24200 * 23 21 20 41 41 H 1.08996 * 111.12288 * 34.39921 * 23 21 20 42 42 H 1.09001 * 110.36875 * 204.80156 * 24 23 21 43 43 H 1.08990 * 110.21492 * 82.75269 * 24 23 21 44 44 H 1.08999 * 109.83032 * 238.77351 * 26 25 24 45 45 H 1.09002 * 109.90916 * 117.84086 * 26 25 24 46 46 H 1.08004 * 119.91156 * 179.70449 * 27 12 11 47 47 H 1.08007 * 120.08500 * 180.25495 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6965 -1.2124 5 1 1.2779 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0936 10 6 1.8649 -3.5185 0.7946 11 6 1.1804 -4.6948 0.8808 12 6 -0.0707 -4.8237 0.2777 13 7 -0.7636 -6.0278 0.3707 14 6 -0.6815 -6.7677 1.4941 15 8 0.0582 -6.4239 2.3957 16 7 -1.4194 -7.8887 1.6182 17 6 -1.3255 -8.6962 2.8369 18 6 -2.2576 -9.9040 2.7216 19 8 -1.8047 -10.7562 1.6677 20 6 -2.6106 -11.9204 1.4745 21 6 -2.0352 -12.7547 0.3283 22 1 -0.9838 -12.9814 0.5055 23 6 -2.8555 -14.0580 0.1273 24 6 -2.6207 -14.3200 -1.3843 25 8 -2.5922 -13.0194 -1.9935 26 6 -2.2212 -12.0329 -1.0237 27 6 -0.6283 -3.7543 -0.4228 28 6 0.0420 -2.5701 -0.5133 29 1 -0.4849 0.8401 0.0004 30 1 2.8336 -3.4203 1.2619 31 1 1.6077 -5.5285 1.4183 32 1 -1.3056 -6.3341 -0.3733 33 1 -2.0093 -8.1632 0.8988 34 1 -0.2995 -9.0405 2.9666 35 1 -1.6174 -8.0924 3.6962 36 1 -2.2553 -10.4560 3.6615 37 1 -3.2695 -9.5625 2.5033 38 1 -2.6159 -12.5143 2.3885 39 1 -3.6296 -11.6204 1.2302 40 1 -2.4584 -14.8699 0.7364 41 1 -3.9124 -13.8931 0.3366 42 1 -3.4361 -14.9136 -1.7976 43 1 -1.6688 -14.8292 -1.5348 44 1 -3.0087 -11.2842 -0.9379 45 1 -1.2872 -11.5548 -1.3191 46 1 -1.5954 -3.8631 -0.8913 47 1 -0.3930 -1.7416 -1.0526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069255924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:30 Heat of formation + Delta-G solvation = -100.307772 kcal Electronic energy + Delta-G solvation = -27443.892983 eV Core-core repulsion = 23398.515489 eV Total energy + Delta-G solvation = -4045.377495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.03696 -39.81052 -38.29540 -37.32419 -34.88625 -34.21244 -33.25506 -32.77534 -30.30540 -29.58633 -29.32475 -28.32204 -25.89866 -24.83987 -23.02555 -22.68692 -21.51167 -21.11509 -20.81276 -20.03699 -17.98447 -17.52725 -17.19388 -16.99993 -16.76593 -16.36324 -15.99394 -15.21634 -15.16535 -14.98555 -14.81947 -14.37302 -13.91307 -13.73530 -13.72661 -13.42895 -13.14897 -12.79833 -12.62329 -12.37314 -12.09827 -12.03426 -11.81399 -11.65273 -11.61620 -11.35692 -11.27794 -11.20023 -11.07212 -10.95450 -10.66688 -10.10994 -10.02310 -9.89964 -9.47406 -9.39726 -9.17404 -8.88801 -8.77990 -7.46443 -6.75703 -6.54487 -4.26591 2.73337 3.02963 3.11797 3.12931 3.15197 3.17302 3.24579 3.48293 3.77384 3.94361 4.03678 4.30180 4.37092 4.62835 4.66807 4.69191 4.75766 4.77963 4.82726 4.86800 4.97785 5.04897 5.07913 5.22939 5.31771 5.38061 5.49895 5.58172 5.68911 5.70951 5.76066 6.26403 6.50159 6.57491 6.62005 6.74549 6.84396 6.90536 7.12196 7.22810 7.34730 7.48525 7.72804 7.94288 8.04702 8.16892 8.38574 8.54850 8.71157 9.00310 9.00503 9.17206 10.36804 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.001768 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.490511 B =15834.516814 C =16444.613124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.069 3.931 3 Si 0.915 3.085 4 H -0.266 1.266 5 H -0.280 1.280 6 H -0.267 1.267 7 C -0.462 4.462 8 H 0.074 0.926 9 C 0.097 3.903 10 C -0.203 4.203 11 C -0.087 4.087 12 C 0.025 3.975 13 N -0.667 5.667 14 C 0.695 3.305 15 O -0.580 6.580 16 N -0.748 5.748 17 C 0.144 3.856 18 C 0.051 3.949 19 O -0.383 6.383 20 C 0.073 3.927 21 C -0.122 4.122 22 H 0.095 0.905 23 C -0.150 4.150 24 C 0.051 3.949 25 O -0.386 6.386 26 C 0.059 3.941 27 C -0.124 4.124 28 C -0.140 4.140 29 H 0.277 0.723 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.392 0.608 33 H 0.394 0.606 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.074 0.926 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.811 -25.268 1.275 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.145 4.145 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.192 1.192 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.224 4.224 11 C -0.108 4.108 12 C -0.067 4.067 13 N -0.313 5.313 14 C 0.396 3.604 15 O -0.457 6.457 16 N -0.406 5.406 17 C 0.020 3.980 18 C -0.026 4.026 19 O -0.302 6.302 20 C -0.004 4.004 21 C -0.141 4.141 22 H 0.113 0.887 23 C -0.188 4.188 24 C -0.025 4.025 25 O -0.306 6.306 26 C -0.017 4.017 27 C -0.145 4.145 28 C -0.160 4.160 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.225 0.775 33 H 0.228 0.772 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.099 0.901 42 H 0.104 0.896 43 H 0.080 0.920 44 H 0.090 0.910 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.217 -24.700 1.821 26.426 hybrid contribution -0.492 0.351 -0.085 0.611 sum -9.709 -24.348 1.736 26.270 Atomic orbital electron populations 1.69761 1.07236 1.28637 1.38588 1.25856 0.94932 1.01057 0.92664 0.86263 0.79778 0.80243 0.79702 1.19116 1.20512 1.19169 1.19438 0.94640 0.90235 1.45034 0.90739 1.17711 0.92357 0.92026 0.88475 1.20805 1.01163 0.94940 1.05446 1.20434 0.92785 0.97936 0.99597 1.17081 0.93694 0.85014 1.10953 1.42107 1.51654 1.22161 1.15399 1.16013 0.81229 0.80064 0.83131 1.90907 1.42195 1.71691 1.40931 1.44996 1.48519 1.26254 1.20821 1.21122 1.00237 0.89140 0.87546 1.22822 0.97732 0.91146 0.90857 1.87961 1.53164 1.34620 1.54450 1.22424 0.93975 0.86717 0.97301 1.22737 1.01667 0.94689 0.94996 0.88681 1.23313 1.01111 0.97069 0.97268 1.23393 1.01553 0.86074 0.91491 1.88427 1.90655 1.16163 1.35306 1.23170 1.00925 0.91127 0.86486 1.20294 0.98389 0.93062 1.02717 1.21168 0.97300 0.95451 1.02103 0.91214 0.88669 0.87333 0.77546 0.77231 0.90905 0.90110 0.91570 0.92479 0.92777 0.92837 0.89489 0.90080 0.89605 0.92040 0.91004 0.90774 0.89181 0.85065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.63 10.60 55.54 0.59 -21.04 16 2 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 3 Si 0.92 19.42 29.56 -169.99 -5.03 14.39 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.46 -12.62 9.02 -37.86 -0.34 -12.96 16 8 H 0.07 1.95 7.85 -52.48 -0.41 1.54 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -5.31 9.74 -39.26 -0.38 -5.69 16 11 C -0.09 -2.17 8.61 -39.79 -0.34 -2.51 16 12 C 0.03 0.58 6.31 -83.57 -0.53 0.05 16 13 N -0.67 -12.19 5.31 -14.10 -0.07 -12.27 16 14 C 0.69 12.72 8.40 -86.92 -0.73 11.99 16 15 O -0.58 -13.16 13.76 5.29 0.07 -13.08 16 16 N -0.75 -9.66 5.51 -65.23 -0.36 -10.02 16 17 C 0.14 1.57 6.06 -4.04 -0.02 1.55 16 18 C 0.05 0.38 6.07 37.16 0.23 0.60 16 19 O -0.38 -3.26 10.19 -35.23 -0.36 -3.62 16 20 C 0.07 0.44 5.26 37.16 0.20 0.64 16 21 C -0.12 -0.78 3.26 -88.67 -0.29 -1.07 16 22 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 23 C -0.15 -0.71 6.64 -24.34 -0.16 -0.87 16 24 C 0.05 0.32 7.78 38.32 0.30 0.62 16 25 O -0.39 -3.73 11.36 -35.23 -0.40 -4.13 16 26 C 0.06 0.49 7.31 37.88 0.28 0.77 16 27 C -0.12 -2.90 9.90 -39.79 -0.39 -3.29 16 28 C -0.14 -3.68 8.61 -39.26 -0.34 -4.02 16 29 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 30 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.11 2.70 6.22 -52.49 -0.33 2.37 16 32 H 0.39 5.64 8.83 -40.82 -0.36 5.27 16 33 H 0.39 4.04 8.49 -40.82 -0.35 3.70 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.05 0.29 8.01 -51.93 -0.42 -0.13 16 40 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.08 0.34 8.04 -51.93 -0.42 -0.08 16 42 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.57 7.72 -51.93 -0.40 0.17 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.09 1.84 8.06 -52.48 -0.42 1.41 16 47 H 0.13 3.55 6.13 -52.48 -0.32 3.23 16 LS Contribution 388.67 15.07 5.86 5.86 Total: -1.00 -33.23 388.67 -10.13 -43.36 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.21 Total: 10.99 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: -3.22 Total: -10.43 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 0.15 Total: -43.33 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -0.69 Total: -20.83 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.23 -10.13 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069255924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.952 kcal (2) G-P(sol) polarization free energy of solvation -33.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds