Wall clock time and date at job start Tue Mar 31 2020 23:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30877 * 1 3 3 Si 1.86804 * 119.99973 * 2 1 4 4 H 1.48495 * 109.47336 * 239.99899 * 3 2 1 5 5 H 1.48493 * 109.47293 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46702 * 120.00137 * 3 2 1 7 7 C 1.39891 * 119.99992 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00095 * 175.55789 * 7 2 1 9 9 C 1.41155 * 120.00244 * 355.55608 * 7 2 1 10 10 C 1.40868 * 120.16663 * 214.78641 * 9 7 2 11 11 C 1.36370 * 119.82856 * 180.02562 * 10 9 7 12 12 C 1.39485 * 120.17014 * 359.96611 * 11 10 9 13 13 N 1.39240 * 119.83002 * 180.02562 * 12 11 10 14 14 C 1.34772 * 120.00501 * 35.30087 * 13 12 11 15 15 O 1.21585 * 119.99523 * 355.70457 * 14 13 12 16 16 N 1.34777 * 120.00268 * 175.70492 * 14 13 12 17 17 C 1.46495 * 119.99753 * 179.72158 * 16 14 13 18 18 C 1.53001 * 109.47119 * 180.02562 * 17 16 14 19 19 O 1.42897 * 109.47096 * 65.00209 * 18 17 16 20 20 C 1.42907 * 114.00406 * 180.02562 * 19 18 17 21 21 C 1.52998 * 109.47383 * 180.02562 * 20 19 18 22 22 H 1.09000 * 110.75388 * 54.29123 * 21 20 19 23 23 C 1.55304 * 110.84814 * 177.77120 * 21 20 19 24 24 C 1.55200 * 100.82752 * 152.17804 * 23 21 20 25 25 O 1.43652 * 105.25726 * 323.81394 * 24 23 21 26 26 C 1.43228 * 109.97405 * 24.28687 * 25 24 23 27 27 C 1.39477 * 120.33015 * 0.30630 * 12 11 10 28 28 C 1.36374 * 120.16816 * 359.44031 * 27 12 11 29 29 H 0.97001 * 119.99582 * 359.97438 * 1 2 3 30 30 H 1.07996 * 120.08283 * 359.97438 * 10 9 7 31 31 H 1.08001 * 119.91401 * 180.02562 * 11 10 9 32 32 H 0.97005 * 119.99554 * 215.29518 * 13 12 11 33 33 H 0.96997 * 120.00148 * 0.02562 * 16 14 13 34 34 H 1.08998 * 109.47703 * 300.00468 * 17 16 14 35 35 H 1.09000 * 109.47172 * 60.00404 * 17 16 14 36 36 H 1.09000 * 109.47762 * 185.00270 * 18 17 16 37 37 H 1.09004 * 109.47005 * 305.00322 * 18 17 16 38 38 H 1.08998 * 109.46652 * 299.99871 * 20 19 18 39 39 H 1.08998 * 109.46646 * 59.99747 * 20 19 18 40 40 H 1.08996 * 111.12151 * 270.24200 * 23 21 20 41 41 H 1.08996 * 111.12288 * 34.39921 * 23 21 20 42 42 H 1.09001 * 110.36875 * 204.80156 * 24 23 21 43 43 H 1.08990 * 110.21492 * 82.75269 * 24 23 21 44 44 H 1.08999 * 109.83032 * 238.77351 * 26 25 24 45 45 H 1.09002 * 109.90916 * 117.84086 * 26 25 24 46 46 H 1.08004 * 119.91156 * 179.70449 * 27 12 11 47 47 H 1.08007 * 120.08500 * 180.25495 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 3.0965 1.6965 -1.2124 5 1 1.2779 2.7465 0.0006 6 1 3.0965 1.6963 1.2125 7 6 2.0082 -1.2115 -0.0005 8 1 3.0858 -1.2129 -0.0730 9 6 1.3057 -2.4322 0.0936 10 6 1.8649 -3.5185 0.7946 11 6 1.1804 -4.6948 0.8808 12 6 -0.0707 -4.8237 0.2777 13 7 -0.7636 -6.0278 0.3707 14 6 -0.6815 -6.7677 1.4941 15 8 0.0582 -6.4239 2.3957 16 7 -1.4194 -7.8887 1.6182 17 6 -1.3255 -8.6962 2.8369 18 6 -2.2576 -9.9040 2.7216 19 8 -1.8047 -10.7562 1.6677 20 6 -2.6106 -11.9204 1.4745 21 6 -2.0352 -12.7547 0.3283 22 1 -0.9838 -12.9814 0.5055 23 6 -2.8555 -14.0580 0.1273 24 6 -2.6207 -14.3200 -1.3843 25 8 -2.5922 -13.0194 -1.9935 26 6 -2.2212 -12.0329 -1.0237 27 6 -0.6283 -3.7543 -0.4228 28 6 0.0420 -2.5701 -0.5133 29 1 -0.4849 0.8401 0.0004 30 1 2.8336 -3.4203 1.2619 31 1 1.6077 -5.5285 1.4183 32 1 -1.3056 -6.3341 -0.3733 33 1 -2.0093 -8.1632 0.8988 34 1 -0.2995 -9.0405 2.9666 35 1 -1.6174 -8.0924 3.6962 36 1 -2.2553 -10.4560 3.6615 37 1 -3.2695 -9.5625 2.5033 38 1 -2.6159 -12.5143 2.3885 39 1 -3.6296 -11.6204 1.2302 40 1 -2.4584 -14.8699 0.7364 41 1 -3.9124 -13.8931 0.3366 42 1 -3.4361 -14.9136 -1.7976 43 1 -1.6688 -14.8292 -1.5348 44 1 -3.0087 -11.2842 -0.9379 45 1 -1.2872 -11.5548 -1.3191 46 1 -1.5954 -3.8631 -0.8913 47 1 -0.3930 -1.7416 -1.0526 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069255924.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:27 Heat of formation + Delta-G solvation = -123.199559 kcal Electronic energy + Delta-G solvation = -27444.885645 eV Core-core repulsion = 23398.515489 eV Total energy + Delta-G solvation = -4046.370157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -41.39100 -40.51045 -39.36107 -38.73094 -36.29494 -35.71619 -34.67027 -33.80864 -31.50796 -31.16561 -30.49535 -29.64793 -26.76689 -26.34529 -24.00327 -23.30316 -23.10190 -22.54819 -21.68822 -21.60398 -19.47930 -19.10798 -18.28756 -18.03542 -17.56522 -17.10603 -16.95337 -16.77737 -16.38833 -15.91549 -15.76793 -15.69193 -15.50669 -14.98181 -14.56780 -14.49045 -14.24668 -14.13909 -13.95503 -13.74349 -13.55772 -13.20535 -12.98905 -12.83686 -12.74785 -12.56093 -12.46242 -12.41028 -12.11872 -11.87665 -11.81411 -11.66161 -11.38214 -11.22797 -11.01252 -10.64896 -10.58107 -10.49718 -10.06660 -9.44027 -8.66421 -8.47396 -6.29811 0.87184 1.16791 1.40566 1.50303 1.53045 1.80741 2.21955 2.26855 2.54385 2.83939 2.97639 3.41244 3.49436 3.71110 3.78984 3.87175 4.04935 4.21532 4.24652 4.33385 4.34775 4.41604 4.48968 4.55228 4.58298 4.65108 4.68571 4.81685 4.86360 4.90239 4.93173 4.96098 4.99522 5.15792 5.17247 5.23560 5.35430 5.46284 5.50706 5.71725 5.84511 6.03149 6.05914 6.14043 6.22252 6.28181 6.42504 6.70805 6.99472 7.03746 7.17327 7.67637 8.45274 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.024939 B = 0.001768 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.490511 B =15834.516814 C =16444.613124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.266 1.266 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.219 4.219 11 C -0.099 4.099 12 C 0.042 3.958 13 N -0.660 5.660 14 C 0.692 3.308 15 O -0.626 6.626 16 N -0.725 5.725 17 C 0.139 3.861 18 C 0.061 3.939 19 O -0.406 6.406 20 C 0.072 3.928 21 C -0.120 4.120 22 H 0.087 0.913 23 C -0.139 4.139 24 C 0.041 3.959 25 O -0.415 6.415 26 C 0.055 3.945 27 C -0.121 4.121 28 C -0.157 4.157 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.413 0.587 33 H 0.411 0.589 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.125 0.875 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 -26.730 1.658 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.810 3.190 4 H -0.183 1.183 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.239 4.239 11 C -0.120 4.120 12 C -0.052 4.052 13 N -0.308 5.308 14 C 0.392 3.608 15 O -0.507 6.507 16 N -0.382 5.382 17 C 0.015 3.985 18 C -0.016 4.016 19 O -0.326 6.326 20 C -0.004 4.004 21 C -0.139 4.139 22 H 0.105 0.895 23 C -0.176 4.176 24 C -0.035 4.035 25 O -0.335 6.335 26 C -0.021 4.021 27 C -0.141 4.141 28 C -0.177 4.177 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.250 0.750 33 H 0.247 0.753 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.110 0.890 42 H 0.116 0.884 43 H 0.082 0.918 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.143 0.857 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.102 -26.246 2.176 28.580 hybrid contribution 0.007 0.590 -0.204 0.624 sum -11.095 -25.656 1.973 28.022 Atomic orbital electron populations 1.69826 1.08537 1.29937 1.38769 1.26729 0.95834 1.04255 0.91628 0.85156 0.78488 0.75619 0.79783 1.18260 1.19203 1.19078 1.19677 0.94796 0.91344 1.47200 0.91000 1.18034 0.93477 0.92708 0.89616 1.20918 1.01550 0.95464 1.05927 1.20529 0.93814 0.97459 1.00176 1.17100 0.92951 0.86446 1.08711 1.41894 1.51497 1.20839 1.16559 1.16218 0.81206 0.80985 0.82385 1.90882 1.44267 1.73089 1.42443 1.44852 1.47020 1.24340 1.21984 1.21308 1.00473 0.90285 0.86467 1.22762 0.97154 0.89779 0.91873 1.87927 1.54224 1.35597 1.54855 1.22535 0.94010 0.86056 0.97774 1.22715 1.01687 0.95431 0.94074 0.89485 1.23295 1.01524 0.96613 0.96218 1.23625 1.02294 0.84895 0.92694 1.88391 1.90742 1.17667 1.36720 1.23193 1.00144 0.91313 0.87462 1.20531 0.99370 0.91978 1.02232 1.21160 0.97447 0.96368 1.02729 0.90522 0.88696 0.87597 0.74978 0.75269 0.92613 0.90215 0.89195 0.90649 0.91000 0.91672 0.87611 0.89046 0.88361 0.91821 0.90833 0.92417 0.85728 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.38 10.60 21.82 0.23 -45.15 16 2 C 0.03 1.42 5.42 85.24 0.46 1.88 16 3 Si 0.99 40.03 29.56 68.60 2.03 42.06 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 5 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.50 -28.16 9.02 23.39 0.21 -27.95 16 8 H 0.07 3.91 7.85 -2.91 -0.02 3.89 16 9 C 0.06 3.64 5.55 -21.28 -0.12 3.52 16 10 C -0.22 -11.83 9.74 22.48 0.22 -11.62 16 11 C -0.10 -5.04 8.61 22.13 0.19 -4.85 16 12 C 0.04 1.91 6.31 38.56 0.24 2.16 16 13 N -0.66 -23.10 5.31 -316.79 -1.68 -24.78 16 14 C 0.69 24.57 8.40 179.06 1.50 26.07 16 15 O -0.63 -28.46 13.76 -3.98 -0.05 -28.51 16 16 N -0.72 -17.34 5.51 -478.55 -2.64 -19.98 16 17 C 0.14 2.79 6.06 86.38 0.52 3.32 16 18 C 0.06 0.71 6.07 71.98 0.44 1.15 16 19 O -0.41 -5.88 10.19 -148.98 -1.52 -7.40 16 20 C 0.07 0.66 5.26 71.98 0.38 1.04 16 21 C -0.12 -1.31 3.26 -9.53 -0.03 -1.35 16 22 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 23 C -0.14 -0.95 6.64 32.14 0.21 -0.74 16 24 C 0.04 0.45 7.78 72.74 0.57 1.01 16 25 O -0.41 -7.78 11.36 -148.98 -1.69 -9.47 16 26 C 0.06 0.87 7.31 72.45 0.53 1.40 16 27 C -0.12 -5.56 9.90 22.13 0.22 -5.34 16 28 C -0.16 -8.40 8.61 22.48 0.19 -8.21 16 29 H 0.28 13.92 8.30 -92.71 -0.77 13.15 16 30 H 0.09 4.95 8.06 -2.91 -0.02 4.93 16 31 H 0.11 5.39 6.22 -2.91 -0.02 5.37 16 32 H 0.41 10.83 8.83 -92.70 -0.82 10.01 16 33 H 0.41 7.29 8.49 -92.71 -0.79 6.50 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.08 0.64 8.14 -2.38 -0.02 0.62 16 38 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.07 0.46 8.01 -2.39 -0.02 0.44 16 40 H 0.11 0.35 8.14 -2.39 -0.02 0.33 16 41 H 0.09 0.46 8.04 -2.39 -0.02 0.44 16 42 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.07 1.09 7.72 -2.39 -0.02 1.07 16 45 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.12 4.80 8.06 -2.91 -0.02 4.77 16 47 H 0.12 6.63 6.13 -2.91 -0.02 6.61 16 Total: -1.00 -74.64 388.67 -0.19 -74.83 By element: Atomic # 1 Polarization: 37.50 SS G_CDS: -0.61 Total: 36.89 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 5.74 Total: -18.49 kcal Atomic # 7 Polarization: -85.81 SS G_CDS: -4.09 Total: -89.90 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -3.26 Total: -45.38 kcal Atomic # 14 Polarization: 40.03 SS G_CDS: 2.03 Total: 42.06 kcal Total: -74.64 -0.19 -74.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069255924.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.367 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds