Wall clock time and date at job start Wed Apr 1 2020 00:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 119.99700 * 2 1 4 4 H 1.48506 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47720 * 300.00233 * 3 2 1 6 6 H 1.48504 * 109.47297 * 60.00029 * 3 2 1 7 7 C 1.38653 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00220 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99968 * 174.95078 * 9 7 2 11 11 C 1.38881 * 120.06516 * 185.22937 * 10 9 7 12 12 C 1.38104 * 119.92688 * 179.76691 * 11 10 9 13 13 C 1.38301 * 120.06560 * 0.47825 * 12 11 10 14 14 C 1.50702 * 119.92751 * 179.74854 * 13 12 11 15 15 N 1.46511 * 109.47124 * 270.02101 * 14 13 12 16 16 C 1.34770 * 120.00108 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00107 * 5.14734 * 16 15 14 18 18 N 1.34768 * 120.00305 * 185.14239 * 16 15 14 19 19 C 1.46928 * 120.62897 * 354.62958 * 18 16 15 20 20 C 1.53628 * 108.54269 * 126.36439 * 19 18 16 21 21 C 1.53038 * 109.24237 * 54.85982 * 20 19 18 22 22 C 1.52997 * 109.46181 * 178.48777 * 21 20 19 23 23 O 1.42893 * 109.47487 * 295.06906 * 22 21 20 24 24 C 1.53040 * 109.53674 * 298.50949 * 21 20 19 25 25 C 1.46927 * 120.63601 * 174.90405 * 18 16 15 26 26 C 1.38306 * 120.14385 * 359.77288 * 13 12 11 27 27 C 1.38096 * 120.06567 * 359.97438 * 26 13 12 28 28 H 0.97004 * 120.00279 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03534 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96363 * 180.22830 * 12 11 10 31 31 H 1.08997 * 109.47123 * 30.02376 * 14 13 12 32 32 H 1.09000 * 109.47012 * 150.02416 * 14 13 12 33 33 H 0.96994 * 119.99770 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.58684 * 246.19609 * 19 18 16 35 35 H 1.08996 * 109.58670 * 6.62507 * 19 18 16 36 36 H 1.08997 * 109.63404 * 294.86479 * 20 19 18 37 37 H 1.09006 * 109.42908 * 174.72601 * 20 19 18 38 38 H 1.08997 * 109.45331 * 58.52489 * 21 20 19 39 39 H 1.09001 * 109.46954 * 55.06799 * 22 21 20 40 40 H 1.09007 * 109.47388 * 175.06411 * 22 21 20 41 41 H 0.96702 * 114.00494 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.49921 * 301.41570 * 24 21 20 43 43 H 1.08996 * 109.52565 * 181.33335 * 24 21 20 44 44 H 1.09003 * 109.58536 * 353.37646 * 25 18 16 45 45 H 1.09004 * 109.58407 * 113.65782 * 25 18 16 46 46 H 1.07997 * 119.96745 * 179.97438 * 26 13 12 47 47 H 1.07997 * 120.03631 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8907 2.3966 -1.2124 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0701 -3.5046 -0.1075 11 6 1.4366 -4.7350 -0.2234 12 6 2.1874 -5.8885 -0.3369 13 6 3.5687 -5.8201 -0.3254 14 6 4.3849 -7.0814 -0.4437 15 7 4.6440 -7.6227 0.8928 16 6 5.3603 -8.7556 1.0339 17 8 5.8705 -9.2773 0.0613 18 7 5.5112 -9.3101 2.2529 19 6 5.0019 -8.6313 3.4523 20 6 4.0947 -9.6068 4.2176 21 6 4.8690 -10.8949 4.5060 22 6 3.9823 -11.8554 5.3010 23 8 3.6960 -11.2900 6.5817 24 6 5.2778 -11.5527 3.1860 25 6 6.1934 -10.6021 2.4084 26 6 4.2025 -4.5968 -0.2048 27 6 3.4573 -3.4392 -0.0962 28 1 -0.4851 0.8401 0.0004 29 1 0.3580 -4.7894 -0.2281 30 1 1.6954 -6.8453 -0.4308 31 1 3.8357 -7.8157 -1.0329 32 1 5.3319 -6.8566 -0.9345 33 1 4.2994 -7.1661 1.6761 34 1 5.8373 -8.3319 4.0852 35 1 4.4294 -7.7515 3.1588 36 1 3.2154 -9.8376 3.6162 37 1 3.7836 -9.1510 5.1577 38 1 5.7612 -10.6600 5.0863 39 1 3.0504 -12.0213 4.7606 40 1 4.5009 -12.8054 5.4310 41 1 3.1371 -11.8463 7.1414 42 1 4.3874 -11.7653 2.5943 43 1 5.8086 -12.4823 3.3913 44 1 6.4073 -11.0230 1.4260 45 1 7.1252 -10.4596 2.9557 46 1 5.2813 -4.5467 -0.1957 47 1 3.9527 -2.4843 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069828390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:14 Heat of formation + Delta-G solvation = -83.877203 kcal Electronic energy + Delta-G solvation = -28007.164612 eV Core-core repulsion = 23962.499601 eV Total energy + Delta-G solvation = -4044.665012 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 22.06 seconds Orbital eigenvalues (eV) -40.53067 -39.17222 -38.42107 -36.96422 -36.49300 -34.49979 -33.32596 -32.35966 -31.35572 -30.28138 -29.77460 -27.57381 -25.83836 -24.72081 -23.68716 -23.07461 -22.05078 -20.97019 -20.60310 -19.67623 -18.41094 -18.06251 -17.65532 -17.01986 -16.30624 -15.78233 -15.45281 -15.02611 -14.79905 -14.69217 -14.57817 -14.51781 -14.13435 -13.95287 -13.64673 -13.60497 -13.30847 -13.14490 -12.90576 -12.78016 -12.60299 -12.49272 -12.05192 -11.68249 -11.60895 -11.38710 -11.20093 -11.00601 -10.96524 -10.86696 -10.75393 -10.68267 -10.47604 -10.35612 -10.06799 -9.42464 -9.07853 -8.91976 -8.57943 -8.28348 -7.33081 -6.53346 -4.12127 2.02607 2.13128 2.73338 3.07974 3.09725 3.15168 3.21641 3.75976 3.90009 3.92735 4.30880 4.41116 4.53045 4.65051 4.77776 4.90935 4.98835 5.01291 5.05267 5.13046 5.16011 5.20925 5.26077 5.37746 5.45382 5.53195 5.57008 5.59582 5.66609 5.67744 5.79545 5.82948 5.95404 6.01692 6.12321 6.35694 6.36935 6.58616 6.63191 6.80543 6.87925 6.98442 7.15656 7.20558 7.28272 7.35249 7.71483 7.91559 7.98102 8.62121 8.92220 9.60396 10.64263 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.002107 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.169474 B =13283.424500 C =14120.533988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.393 4.393 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.161 3.839 11 C -0.196 4.196 12 C -0.054 4.054 13 C -0.214 4.214 14 C 0.197 3.803 15 N -0.738 5.738 16 C 0.705 3.295 17 O -0.597 6.597 18 N -0.633 5.633 19 C 0.110 3.890 20 C -0.125 4.125 21 C -0.087 4.087 22 C 0.080 3.920 23 O -0.573 6.573 24 C -0.129 4.129 25 C 0.132 3.868 26 C -0.050 4.050 27 C -0.237 4.237 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.396 0.604 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.046 0.954 40 H 0.045 0.955 41 H 0.379 0.621 42 H 0.069 0.931 43 H 0.076 0.924 44 H 0.095 0.905 45 H 0.063 0.937 46 H 0.108 0.892 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.807 -21.184 9.932 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.469 4.469 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.215 4.215 12 C -0.073 4.073 13 C -0.215 4.215 14 C 0.074 3.926 15 N -0.396 5.396 16 C 0.407 3.593 17 O -0.476 6.476 18 N -0.371 5.371 19 C -0.013 4.013 20 C -0.164 4.164 21 C -0.105 4.105 22 C 0.002 3.998 23 O -0.378 6.378 24 C -0.167 4.167 25 C 0.009 3.991 26 C -0.069 4.069 27 C -0.256 4.256 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.233 0.767 34 H 0.088 0.912 35 H 0.099 0.901 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.064 0.936 40 H 0.063 0.937 41 H 0.226 0.774 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.082 0.918 46 H 0.126 0.874 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.096 -20.837 8.956 24.436 hybrid contribution -0.118 0.631 0.668 0.927 sum 8.977 -20.206 9.625 24.115 Atomic orbital electron populations 1.70045 1.06003 1.27755 1.45571 1.25322 0.95867 0.98945 0.96374 0.85628 0.79160 0.80210 0.78330 1.19036 1.20057 1.20078 1.21406 0.91897 0.80708 1.52868 0.88862 1.83979 1.34515 1.11563 1.77570 1.19441 0.90319 0.88049 0.91607 1.20211 0.99649 0.90272 1.11353 1.20531 0.92768 0.96807 0.97154 1.19232 0.93557 0.93538 1.15212 1.19833 0.98343 0.92221 0.82217 1.45696 1.57365 1.26151 1.10339 1.15916 0.79451 0.81000 0.82938 1.90889 1.53833 1.65059 1.37794 1.47286 1.62006 1.22630 1.05184 1.21746 0.97689 0.95241 0.86628 1.21987 0.98184 0.95370 1.00835 1.21123 0.98812 0.95257 0.95347 1.22227 0.98122 0.95357 0.84059 1.86476 1.73784 1.49655 1.27903 1.21935 1.00703 0.98477 0.95609 1.21369 0.93872 0.82179 1.01684 1.20654 0.98416 0.91657 0.96160 1.21162 0.93768 0.98961 1.11738 0.91933 0.86394 0.86993 0.91843 0.91710 0.76678 0.91227 0.90079 0.91467 0.89881 0.90224 0.93613 0.93677 0.77416 0.91213 0.90570 0.88695 0.91841 0.87376 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.67 13.67 55.48 0.76 -23.91 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.39 -10.67 9.49 30.89 0.29 -10.38 16 8 H 0.09 2.34 5.20 -52.49 -0.27 2.07 16 9 O -0.17 -4.81 9.76 0.04 0.00 -4.81 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.20 -3.93 9.99 -39.39 -0.39 -4.32 16 12 C -0.05 -0.91 9.69 -39.61 -0.38 -1.29 16 13 C -0.21 -3.46 5.25 -104.57 -0.55 -4.01 16 14 C 0.20 2.86 5.80 -5.19 -0.03 2.83 16 15 N -0.74 -9.84 5.46 -66.41 -0.36 -10.20 16 16 C 0.71 10.04 8.29 -86.93 -0.72 9.31 16 17 O -0.60 -10.58 15.79 5.28 0.08 -10.50 16 18 N -0.63 -6.90 2.97 -178.23 -0.53 -7.43 16 19 C 0.11 0.97 6.46 -3.48 -0.02 0.94 16 20 C -0.13 -1.00 5.29 -26.39 -0.14 -1.14 16 21 C -0.09 -0.61 2.39 -90.58 -0.22 -0.83 16 22 C 0.08 0.49 6.43 37.16 0.24 0.73 16 23 O -0.57 -4.03 13.17 -35.23 -0.46 -4.50 16 24 C -0.13 -0.89 5.36 -26.61 -0.14 -1.03 16 25 C 0.13 1.20 6.42 -3.71 -0.02 1.18 16 26 C -0.05 -0.87 9.69 -39.61 -0.38 -1.26 16 27 C -0.24 -4.91 9.17 -39.40 -0.36 -5.28 16 28 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 31 H 0.06 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.06 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.40 4.76 5.92 -40.82 -0.24 4.52 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.70 5.56 -51.93 -0.29 0.42 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.68 7.79 -51.93 -0.40 0.28 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.04 0.22 8.14 -51.92 -0.42 -0.20 16 41 H 0.38 1.07 9.12 45.56 0.42 1.48 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.09 1.01 7.04 -51.93 -0.37 0.65 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 47 H 0.13 2.67 5.64 -52.49 -0.30 2.38 16 LS Contribution 383.60 15.07 5.78 5.78 Total: -1.00 -33.14 383.60 -9.03 -42.17 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.08 Total: 8.46 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -3.19 Total: -10.11 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: -0.13 Total: -41.53 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: -0.38 Total: -19.80 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.14 -9.03 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069828390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.712 kcal (2) G-P(sol) polarization free energy of solvation -33.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 22.06 seconds