Wall clock time and date at job start Wed Apr 1 2020 00:11:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86798 * 119.99700 * 2 1 4 4 H 1.48506 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47720 * 300.00233 * 3 2 1 6 6 H 1.48504 * 109.47297 * 60.00029 * 3 2 1 7 7 C 1.38653 * 120.00262 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00220 * 179.97438 * 7 2 1 9 9 O 1.34833 * 119.99970 * 359.97438 * 7 2 1 10 10 C 1.35751 * 116.99968 * 174.95078 * 9 7 2 11 11 C 1.38881 * 120.06516 * 185.22937 * 10 9 7 12 12 C 1.38104 * 119.92688 * 179.76691 * 11 10 9 13 13 C 1.38301 * 120.06560 * 0.47825 * 12 11 10 14 14 C 1.50702 * 119.92751 * 179.74854 * 13 12 11 15 15 N 1.46511 * 109.47124 * 270.02101 * 14 13 12 16 16 C 1.34770 * 120.00108 * 179.97438 * 15 14 13 17 17 O 1.21593 * 120.00107 * 5.14734 * 16 15 14 18 18 N 1.34768 * 120.00305 * 185.14239 * 16 15 14 19 19 C 1.46928 * 120.62897 * 354.62958 * 18 16 15 20 20 C 1.53628 * 108.54269 * 126.36439 * 19 18 16 21 21 C 1.53038 * 109.24237 * 54.85982 * 20 19 18 22 22 C 1.52997 * 109.46181 * 178.48777 * 21 20 19 23 23 O 1.42893 * 109.47487 * 295.06906 * 22 21 20 24 24 C 1.53040 * 109.53674 * 298.50949 * 21 20 19 25 25 C 1.46927 * 120.63601 * 174.90405 * 18 16 15 26 26 C 1.38306 * 120.14385 * 359.77288 * 13 12 11 27 27 C 1.38096 * 120.06567 * 359.97438 * 26 13 12 28 28 H 0.97004 * 120.00279 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03534 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96363 * 180.22830 * 12 11 10 31 31 H 1.08997 * 109.47123 * 30.02376 * 14 13 12 32 32 H 1.09000 * 109.47012 * 150.02416 * 14 13 12 33 33 H 0.96994 * 119.99770 * 0.02562 * 15 14 13 34 34 H 1.09001 * 109.58684 * 246.19609 * 19 18 16 35 35 H 1.08996 * 109.58670 * 6.62507 * 19 18 16 36 36 H 1.08997 * 109.63404 * 294.86479 * 20 19 18 37 37 H 1.09006 * 109.42908 * 174.72601 * 20 19 18 38 38 H 1.08997 * 109.45331 * 58.52489 * 21 20 19 39 39 H 1.09001 * 109.46954 * 55.06799 * 22 21 20 40 40 H 1.09007 * 109.47388 * 175.06411 * 22 21 20 41 41 H 0.96702 * 114.00494 * 180.02562 * 23 22 21 42 42 H 1.09001 * 109.49921 * 301.41570 * 24 21 20 43 43 H 1.08996 * 109.52565 * 181.33335 * 24 21 20 44 44 H 1.09003 * 109.58536 * 353.37646 * 25 18 16 45 45 H 1.09004 * 109.58407 * 113.65782 * 25 18 16 46 46 H 1.07997 * 119.96745 * 179.97438 * 26 13 12 47 47 H 1.07997 * 120.03631 * 179.97438 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.7096 1.3465 0.0006 5 1 1.8907 2.3966 -1.2124 6 1 1.8907 2.3965 1.2125 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0701 -3.5046 -0.1075 11 6 1.4366 -4.7350 -0.2234 12 6 2.1874 -5.8885 -0.3369 13 6 3.5687 -5.8201 -0.3254 14 6 4.3849 -7.0814 -0.4437 15 7 4.6440 -7.6227 0.8928 16 6 5.3603 -8.7556 1.0339 17 8 5.8705 -9.2773 0.0613 18 7 5.5112 -9.3101 2.2529 19 6 5.0019 -8.6313 3.4523 20 6 4.0947 -9.6068 4.2176 21 6 4.8690 -10.8949 4.5060 22 6 3.9823 -11.8554 5.3010 23 8 3.6960 -11.2900 6.5817 24 6 5.2778 -11.5527 3.1860 25 6 6.1934 -10.6021 2.4084 26 6 4.2025 -4.5968 -0.2048 27 6 3.4573 -3.4392 -0.0962 28 1 -0.4851 0.8401 0.0004 29 1 0.3580 -4.7894 -0.2281 30 1 1.6954 -6.8453 -0.4308 31 1 3.8357 -7.8157 -1.0329 32 1 5.3319 -6.8566 -0.9345 33 1 4.2994 -7.1661 1.6761 34 1 5.8373 -8.3319 4.0852 35 1 4.4294 -7.7515 3.1588 36 1 3.2154 -9.8376 3.6162 37 1 3.7836 -9.1510 5.1577 38 1 5.7612 -10.6600 5.0863 39 1 3.0504 -12.0213 4.7606 40 1 4.5009 -12.8054 5.4310 41 1 3.1371 -11.8463 7.1414 42 1 4.3874 -11.7653 2.5943 43 1 5.8086 -12.4823 3.3913 44 1 6.4073 -11.0230 1.4260 45 1 7.1252 -10.4596 2.9557 46 1 5.2813 -4.5467 -0.1957 47 1 3.9527 -2.4843 -0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069828390.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:47 Heat of formation + Delta-G solvation = -107.248340 kcal Electronic energy + Delta-G solvation = -28008.178061 eV Core-core repulsion = 23962.499601 eV Total energy + Delta-G solvation = -4045.678460 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 23.22 seconds Orbital eigenvalues (eV) -41.51838 -40.78714 -39.25413 -38.47023 -37.21926 -35.75905 -34.35180 -34.02257 -32.13536 -31.83550 -31.13059 -28.37546 -27.55427 -26.12580 -24.37853 -23.84980 -23.64837 -22.21399 -21.62158 -20.58897 -19.88196 -19.34643 -18.78559 -18.15397 -17.34805 -16.80192 -16.43170 -16.31580 -16.07778 -15.98797 -15.59901 -15.39625 -15.36290 -15.30104 -15.15323 -14.64000 -14.44594 -14.27078 -14.09101 -13.91302 -13.61575 -13.45307 -13.21812 -13.15599 -13.00891 -12.56759 -12.35281 -12.24998 -12.23125 -12.09037 -11.77565 -11.64230 -11.49852 -11.20592 -11.18566 -10.81754 -10.80423 -10.20857 -9.81909 -9.47873 -9.02446 -8.48708 -6.16739 0.52031 0.57242 1.35976 1.42769 1.53757 1.74000 2.12945 2.16742 2.74650 3.00295 3.20826 3.32719 3.48437 3.72335 3.79968 3.87825 4.03002 4.05135 4.16893 4.19732 4.30110 4.38484 4.46202 4.55067 4.55497 4.56902 4.64157 4.73791 4.76735 4.80861 4.89295 4.94393 5.00365 5.03471 5.06250 5.14396 5.17464 5.26105 5.43058 5.46534 5.52399 5.60079 5.68588 5.75326 5.94774 6.01327 6.15352 6.93608 6.94862 6.96380 7.54308 7.75384 8.74292 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016378 B = 0.002107 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.169474 B =13283.424500 C =14120.533988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.251 1.251 5 H -0.270 1.270 6 H -0.268 1.268 7 C -0.412 4.412 8 H 0.104 0.896 9 O -0.228 6.228 10 C 0.123 3.877 11 C -0.203 4.203 12 C -0.042 4.042 13 C -0.182 4.182 14 C 0.203 3.797 15 N -0.733 5.733 16 C 0.702 3.298 17 O -0.634 6.634 18 N -0.628 5.628 19 C 0.108 3.892 20 C -0.120 4.120 21 C -0.086 4.086 22 C 0.081 3.919 23 O -0.593 6.593 24 C -0.118 4.118 25 C 0.127 3.873 26 C -0.045 4.045 27 C -0.243 4.243 28 H 0.273 0.727 29 H 0.116 0.884 30 H 0.147 0.853 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.404 0.596 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.061 0.939 41 H 0.396 0.604 42 H 0.061 0.939 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.137 0.863 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.936 -23.276 10.852 27.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.174 1.174 5 H -0.195 1.195 6 H -0.193 1.193 7 C -0.488 4.488 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.072 3.928 11 C -0.223 4.223 12 C -0.061 4.061 13 C -0.183 4.183 14 C 0.080 3.920 15 N -0.391 5.391 16 C 0.403 3.597 17 O -0.517 6.517 18 N -0.365 5.365 19 C -0.014 4.014 20 C -0.158 4.158 21 C -0.104 4.104 22 C 0.003 3.997 23 O -0.402 6.402 24 C -0.157 4.157 25 C 0.004 3.996 26 C -0.064 4.064 27 C -0.262 4.262 28 H 0.082 0.918 29 H 0.134 0.866 30 H 0.164 0.836 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.242 0.758 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.245 0.755 42 H 0.080 0.920 43 H 0.117 0.883 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.155 0.845 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.245 -22.999 9.926 27.458 hybrid contribution -0.648 0.876 0.412 1.165 sum 10.597 -22.123 10.339 26.620 Atomic orbital electron populations 1.70183 1.08004 1.28799 1.48659 1.26577 0.96836 1.02742 0.95830 0.84536 0.78292 0.74912 0.78529 1.17438 1.19481 1.19337 1.21868 0.92565 0.81325 1.53086 0.87915 1.83950 1.36032 1.12645 1.80801 1.19987 0.91588 0.87969 0.93220 1.20441 1.00089 0.90357 1.11378 1.20865 0.92990 0.97001 0.95227 1.19488 0.93493 0.93999 1.11336 1.19720 0.98099 0.91189 0.83026 1.45467 1.57391 1.26172 1.10079 1.16031 0.79263 0.80915 0.83447 1.90868 1.55391 1.66059 1.39341 1.47371 1.61339 1.23043 1.04713 1.21893 0.98293 0.95296 0.85942 1.21922 0.97805 0.95770 1.00344 1.21110 0.98863 0.94984 0.95467 1.22221 0.98176 0.95548 0.83742 1.86424 1.74422 1.50851 1.28463 1.21850 1.00082 0.98751 0.94994 1.21535 0.94966 0.81711 1.01345 1.20932 0.99768 0.90794 0.94883 1.21235 0.93026 1.00000 1.11954 0.91794 0.86586 0.83572 0.91196 0.91532 0.75770 0.89999 0.90073 0.92255 0.90026 0.90238 0.93482 0.92114 0.75463 0.92038 0.88329 0.90436 0.90398 0.84475 0.86173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.46 13.67 21.61 0.30 -55.16 16 2 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 3 Si 1.02 42.08 29.55 68.60 2.03 44.10 16 4 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 5 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 6 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 7 C -0.41 -23.41 9.49 67.92 0.64 -22.77 16 8 H 0.10 5.34 5.20 -2.91 -0.02 5.33 16 9 O -0.23 -13.34 9.76 -22.78 -0.22 -13.56 16 10 C 0.12 5.88 6.65 22.58 0.15 6.03 16 11 C -0.20 -8.17 9.99 22.39 0.22 -7.94 16 12 C -0.04 -1.33 9.69 22.25 0.22 -1.11 16 13 C -0.18 -5.36 5.25 -19.83 -0.10 -5.46 16 14 C 0.20 5.24 5.80 85.63 0.50 5.73 16 15 N -0.73 -17.49 5.46 -482.28 -2.63 -20.13 16 16 C 0.70 18.49 8.29 179.06 1.49 19.98 16 17 O -0.63 -21.52 15.79 -4.01 -0.06 -21.59 16 18 N -0.63 -12.34 2.97 -836.06 -2.48 -14.82 16 19 C 0.11 1.64 6.46 86.51 0.56 2.20 16 20 C -0.12 -1.66 5.29 30.82 0.16 -1.50 16 21 C -0.09 -0.99 2.39 -10.77 -0.03 -1.01 16 22 C 0.08 0.79 6.43 71.98 0.46 1.25 16 23 O -0.59 -7.04 13.17 -148.98 -1.96 -9.00 16 24 C -0.12 -1.34 5.36 30.67 0.16 -1.17 16 25 C 0.13 2.05 6.42 86.36 0.55 2.60 16 26 C -0.05 -1.47 9.69 22.25 0.22 -1.26 16 27 C -0.24 -10.05 9.17 22.39 0.21 -9.84 16 28 H 0.27 15.06 8.31 -92.71 -0.77 14.29 16 29 H 0.12 4.63 8.06 -2.91 -0.02 4.60 16 30 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.07 1.79 8.08 -2.39 -0.02 1.77 16 32 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 33 H 0.40 8.52 5.92 -92.71 -0.55 7.97 16 34 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.22 5.56 -2.39 -0.01 1.20 16 36 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 1.19 7.79 -2.38 -0.02 1.17 16 38 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 40 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 41 H 0.40 1.40 9.12 -74.06 -0.68 0.73 16 42 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.10 0.70 8.14 -2.39 -0.02 0.69 16 44 H 0.08 1.56 7.04 -2.39 -0.02 1.54 16 45 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 46 H 0.14 3.72 8.06 -2.91 -0.02 3.69 16 47 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 Total: -1.00 -75.70 383.60 0.62 -75.08 By element: Atomic # 1 Polarization: 30.32 SS G_CDS: -0.22 Total: 30.11 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.88 Total: -15.04 kcal Atomic # 7 Polarization: -85.29 SS G_CDS: -4.82 Total: -90.11 kcal Atomic # 8 Polarization: -41.90 SS G_CDS: -2.25 Total: -44.15 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -75.70 0.62 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069828390.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.164 kcal (2) G-P(sol) polarization free energy of solvation -75.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 23.22 seconds