Wall clock time and date at job start Wed Apr 1 2020 00:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 119.99653 * 2 1 4 4 H 1.48511 * 109.46955 * 240.00252 * 3 2 1 5 5 H 1.48490 * 109.47383 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47233 * 120.00664 * 3 2 1 7 7 C 1.38652 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99920 * 174.96798 * 9 7 2 11 11 C 1.38872 * 120.06845 * 5.33539 * 10 9 7 12 12 C 1.38104 * 119.92841 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07148 * 0.02968 * 12 11 10 14 14 C 1.50696 * 119.93336 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47047 * 89.99569 * 14 13 12 16 16 C 1.34778 * 119.99712 * 180.02562 * 15 14 13 17 17 O 1.21589 * 120.00139 * 4.97132 * 16 15 14 18 18 N 1.34774 * 119.99810 * 184.97610 * 16 15 14 19 19 C 1.46923 * 120.63322 * 354.65695 * 18 16 15 20 20 C 1.53199 * 108.89184 * 233.56286 * 19 18 16 21 21 C 1.53075 * 109.28949 * 305.57086 * 20 19 18 22 22 C 1.53042 * 109.65749 * 61.15535 * 21 20 19 23 23 H 1.08997 * 109.49956 * 58.65174 * 22 21 20 24 24 C 1.53000 * 109.49579 * 178.74176 * 22 21 20 25 25 O 1.42905 * 109.47123 * 184.83502 * 24 22 21 26 26 C 1.46928 * 120.63036 * 174.67430 * 18 16 15 27 27 C 1.38302 * 120.13554 * 0.22678 * 13 12 11 28 28 C 1.38103 * 120.07093 * 359.49520 * 27 13 12 29 29 H 0.97001 * 120.00393 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03903 * 359.96167 * 11 10 9 31 31 H 1.07999 * 119.96172 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.46904 * 329.99724 * 14 13 12 33 33 H 1.08998 * 109.46957 * 209.99813 * 14 13 12 34 34 H 0.96998 * 119.99935 * 0.02562 * 15 14 13 35 35 H 1.09004 * 109.58281 * 353.41295 * 19 18 16 36 36 H 1.08998 * 109.59440 * 113.70068 * 19 18 16 37 37 H 1.08996 * 109.50066 * 65.38203 * 20 19 18 38 38 H 1.09000 * 109.49669 * 185.48585 * 20 19 18 39 39 H 1.08994 * 109.35154 * 301.13001 * 21 20 19 40 40 H 1.08999 * 109.45015 * 181.23968 * 21 20 19 41 41 H 1.08998 * 109.47792 * 304.84062 * 24 22 21 42 42 H 1.09003 * 109.46949 * 64.84377 * 24 22 21 43 43 H 0.96696 * 114.00090 * 180.02562 * 25 24 22 44 44 H 1.09005 * 109.58761 * 246.15739 * 26 18 16 45 45 H 1.08996 * 109.58779 * 6.58159 * 26 18 16 46 46 H 1.08001 * 119.96442 * 179.72341 * 27 13 12 47 47 H 1.08001 * 120.03926 * 180.25326 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6965 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 -0.1072 11 6 3.4573 -3.4390 -0.0984 12 6 4.2025 -4.5966 -0.2065 13 6 3.5688 -5.8203 -0.3241 14 6 4.3851 -7.0815 -0.4424 15 7 4.6471 -7.6209 0.8942 16 6 5.3648 -8.7529 1.0353 17 8 5.8711 -9.2770 0.0620 18 7 5.5212 -9.3040 2.2552 19 6 5.0159 -8.6226 3.4549 20 6 6.1581 -8.4878 4.4669 21 6 6.7637 -9.8683 4.7327 22 6 7.3317 -10.4405 3.4318 23 1 8.0878 -9.7626 3.0358 24 6 7.9638 -11.8062 3.7078 25 8 8.5924 -12.2892 2.5187 26 6 6.2005 -10.5974 2.4109 27 6 2.1876 -5.8884 -0.3384 28 6 1.4367 -4.7349 -0.2249 29 1 -0.4851 0.8400 0.0004 30 1 3.9528 -2.4836 -0.0073 31 1 5.2813 -4.5463 -0.1993 32 1 5.3309 -6.8572 -0.9355 33 1 3.8347 -7.8167 -1.0295 34 1 4.3040 -7.1633 1.6777 35 1 4.6481 -7.6326 3.1851 36 1 4.2064 -9.2063 3.8931 37 1 6.9257 -7.8275 4.0635 38 1 5.7723 -8.0721 5.3977 39 1 5.9904 -10.5344 5.1152 40 1 7.5623 -9.7787 5.4691 41 1 8.7079 -11.7093 4.4984 42 1 7.1906 -12.5079 4.0206 43 1 9.0147 -13.1531 2.6202 44 1 5.4893 -11.3435 2.7654 45 1 6.6143 -10.9105 1.4523 46 1 1.6956 -6.8450 -0.4348 47 1 0.3580 -4.7891 -0.2321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069828482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:19 Heat of formation + Delta-G solvation = -83.560837 kcal Electronic energy + Delta-G solvation = -28023.606371 eV Core-core repulsion = 23978.955079 eV Total energy + Delta-G solvation = -4044.651293 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -40.52251 -39.16812 -38.33213 -36.91993 -36.56516 -34.46480 -33.26985 -32.34438 -31.68679 -30.27686 -29.78687 -26.49151 -26.02146 -25.41482 -24.19295 -22.49757 -22.04452 -20.92109 -20.59383 -19.67040 -18.31175 -18.05377 -17.66343 -17.01665 -16.43391 -15.81298 -15.43331 -15.02301 -14.72200 -14.62772 -14.49477 -14.44058 -14.09988 -13.93459 -13.64759 -13.60762 -13.56570 -13.19606 -13.01901 -12.77591 -12.64460 -12.09142 -12.05479 -11.68053 -11.53541 -11.36423 -11.30773 -11.05728 -10.93902 -10.83305 -10.77158 -10.68481 -10.49977 -10.37880 -10.03101 -9.42769 -9.04027 -8.90806 -8.55151 -8.27751 -7.32588 -6.52718 -4.11734 2.03643 2.13629 2.74940 3.08845 3.10318 3.12957 3.25168 3.75050 3.90472 3.96663 4.38269 4.43239 4.52197 4.61667 4.65828 4.82935 5.01431 5.03211 5.10889 5.14138 5.17634 5.21196 5.27187 5.27834 5.45748 5.47903 5.52870 5.60891 5.68708 5.71532 5.83298 5.84468 5.99429 6.00347 6.12740 6.36346 6.38263 6.59708 6.65196 6.81188 6.90328 6.99123 7.16089 7.25759 7.28926 7.35541 7.72036 7.91840 8.01140 8.66037 8.92504 9.60657 10.64684 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.001999 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.913214 B =14005.929370 C =14493.835235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.160 3.840 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.213 4.213 14 C 0.196 3.804 15 N -0.739 5.739 16 C 0.705 3.295 17 O -0.593 6.593 18 N -0.633 5.633 19 C 0.109 3.891 20 C -0.134 4.134 21 C -0.112 4.112 22 C -0.104 4.104 23 H 0.082 0.918 24 C 0.083 3.917 25 O -0.570 6.570 26 C 0.140 3.860 27 C -0.054 4.054 28 C -0.196 4.196 29 H 0.272 0.728 30 H 0.128 0.872 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.396 0.604 35 H 0.081 0.919 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.048 0.952 42 H 0.047 0.953 43 H 0.379 0.621 44 H 0.060 0.940 45 H 0.100 0.900 46 H 0.112 0.888 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.600 -19.964 10.859 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.110 0.890 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.215 4.215 14 C 0.074 3.926 15 N -0.396 5.396 16 C 0.406 3.594 17 O -0.471 6.471 18 N -0.371 5.371 19 C -0.014 4.014 20 C -0.172 4.172 21 C -0.150 4.150 22 C -0.124 4.124 23 H 0.101 0.899 24 C 0.005 3.995 25 O -0.375 6.375 26 C 0.017 3.983 27 C -0.073 4.073 28 C -0.215 4.215 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.126 0.874 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.232 0.768 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.226 0.774 44 H 0.078 0.922 45 H 0.119 0.881 46 H 0.130 0.870 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.259 -19.531 9.882 25.087 hybrid contribution 0.514 0.637 0.771 1.124 sum 12.773 -18.894 10.653 25.171 Atomic orbital electron populations 1.70025 1.05992 1.27964 1.45406 1.25314 0.95863 0.98922 0.96359 0.85767 0.78721 0.79628 0.79259 1.19411 1.20219 1.19456 1.21305 0.91835 0.80737 1.53095 0.88982 1.83979 1.34478 1.11542 1.77603 1.19438 0.90319 0.88047 0.91635 1.21158 0.93767 0.98936 1.11798 1.20654 0.98408 0.91656 0.96177 1.19234 0.93563 0.93538 1.15150 1.19832 0.98329 0.92238 0.82243 1.45685 1.57491 1.26142 1.10267 1.15920 0.79510 0.80908 0.83026 1.90903 1.53775 1.64746 1.37701 1.47273 1.62015 1.22809 1.04983 1.21635 0.96207 0.97679 0.85925 1.21906 0.98541 0.97378 0.99403 1.21491 1.00472 0.96702 0.96295 1.21549 0.98160 0.96202 0.96490 0.89926 1.22152 0.95571 0.94839 0.86931 1.86550 1.75297 1.40088 1.35572 1.21389 0.92726 0.83288 1.00940 1.20540 0.92769 0.96828 0.97127 1.20213 0.99651 0.90275 1.11352 0.91838 0.85437 0.87394 0.91730 0.91805 0.76759 0.90119 0.91283 0.91228 0.90247 0.91493 0.91456 0.93421 0.93473 0.77444 0.92195 0.88141 0.86956 0.86387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.65 13.67 55.48 0.76 -23.89 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 3 Si 0.94 20.03 29.55 -169.99 -5.02 15.00 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 6 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.39 -10.69 9.49 30.89 0.29 -10.40 16 8 H 0.09 2.30 5.20 -52.49 -0.27 2.03 16 9 O -0.17 -4.80 9.76 0.03 0.00 -4.80 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 C -0.24 -4.92 9.17 -39.40 -0.36 -5.29 16 12 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 13 C -0.21 -3.48 5.25 -104.58 -0.55 -4.03 16 14 C 0.20 2.91 5.80 -5.20 -0.03 2.88 16 15 N -0.74 -10.05 5.46 -66.42 -0.36 -10.42 16 16 C 0.70 10.48 8.29 -86.92 -0.72 9.76 16 17 O -0.59 -11.10 15.77 5.29 0.08 -11.02 16 18 N -0.63 -7.24 2.97 -178.50 -0.53 -7.77 16 19 C 0.11 0.91 6.38 -3.71 -0.02 0.89 16 20 C -0.13 -0.92 6.09 -26.59 -0.16 -1.08 16 21 C -0.11 -0.69 5.16 -26.67 -0.14 -0.83 16 22 C -0.10 -0.86 2.58 -90.50 -0.23 -1.09 16 23 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 24 C 0.08 0.54 6.43 37.16 0.24 0.78 16 25 O -0.57 -4.61 13.31 -35.23 -0.47 -5.08 16 26 C 0.14 1.47 5.56 -3.71 -0.02 1.45 16 27 C -0.05 -0.91 9.69 -39.61 -0.38 -1.30 16 28 C -0.20 -3.94 9.99 -39.39 -0.39 -4.33 16 29 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 30 H 0.13 2.66 5.64 -52.48 -0.30 2.36 16 31 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 32 H 0.06 0.99 8.08 -51.93 -0.42 0.57 16 33 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 34 H 0.40 4.77 5.95 -40.82 -0.24 4.53 16 35 H 0.08 0.67 5.65 -51.93 -0.29 0.37 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 41 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 43 H 0.38 1.26 9.12 45.56 0.42 1.68 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.10 1.36 6.84 -51.93 -0.35 1.00 16 46 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 47 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 383.86 15.07 5.78 5.78 Total: -1.00 -33.72 383.86 -9.08 -42.80 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.09 Total: 8.82 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -3.22 Total: -9.42 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: -0.13 Total: -42.08 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.39 Total: -20.91 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.00 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.72 -9.08 -42.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069828482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.765 kcal (2) G-P(sol) polarization free energy of solvation -33.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds