Wall clock time and date at job start Wed Apr 1 2020 00:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31557 * 1 3 3 Si 1.86804 * 119.99653 * 2 1 4 4 H 1.48511 * 109.46955 * 240.00252 * 3 2 1 5 5 H 1.48490 * 109.47383 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47233 * 120.00664 * 3 2 1 7 7 C 1.38652 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00341 * 179.97438 * 7 2 1 9 9 O 1.34835 * 119.99801 * 359.97438 * 7 2 1 10 10 C 1.35752 * 116.99920 * 174.96798 * 9 7 2 11 11 C 1.38872 * 120.06845 * 5.33539 * 10 9 7 12 12 C 1.38104 * 119.92841 * 179.97438 * 11 10 9 13 13 C 1.38301 * 120.07148 * 0.02968 * 12 11 10 14 14 C 1.50696 * 119.93336 * 179.97438 * 13 12 11 15 15 N 1.46501 * 109.47047 * 89.99569 * 14 13 12 16 16 C 1.34778 * 119.99712 * 180.02562 * 15 14 13 17 17 O 1.21589 * 120.00139 * 4.97132 * 16 15 14 18 18 N 1.34774 * 119.99810 * 184.97610 * 16 15 14 19 19 C 1.46923 * 120.63322 * 354.65695 * 18 16 15 20 20 C 1.53199 * 108.89184 * 233.56286 * 19 18 16 21 21 C 1.53075 * 109.28949 * 305.57086 * 20 19 18 22 22 C 1.53042 * 109.65749 * 61.15535 * 21 20 19 23 23 H 1.08997 * 109.49956 * 58.65174 * 22 21 20 24 24 C 1.53000 * 109.49579 * 178.74176 * 22 21 20 25 25 O 1.42905 * 109.47123 * 184.83502 * 24 22 21 26 26 C 1.46928 * 120.63036 * 174.67430 * 18 16 15 27 27 C 1.38302 * 120.13554 * 0.22678 * 13 12 11 28 28 C 1.38103 * 120.07093 * 359.49520 * 27 13 12 29 29 H 0.97001 * 120.00393 * 359.97438 * 1 2 3 30 30 H 1.08003 * 120.03903 * 359.96167 * 11 10 9 31 31 H 1.07999 * 119.96172 * 180.02562 * 12 11 10 32 32 H 1.08999 * 109.46904 * 329.99724 * 14 13 12 33 33 H 1.08998 * 109.46957 * 209.99813 * 14 13 12 34 34 H 0.96998 * 119.99935 * 0.02562 * 15 14 13 35 35 H 1.09004 * 109.58281 * 353.41295 * 19 18 16 36 36 H 1.08998 * 109.59440 * 113.70068 * 19 18 16 37 37 H 1.08996 * 109.50066 * 65.38203 * 20 19 18 38 38 H 1.09000 * 109.49669 * 185.48585 * 20 19 18 39 39 H 1.08994 * 109.35154 * 301.13001 * 21 20 19 40 40 H 1.08999 * 109.45015 * 181.23968 * 21 20 19 41 41 H 1.08998 * 109.47792 * 304.84062 * 24 22 21 42 42 H 1.09003 * 109.46949 * 64.84377 * 24 22 21 43 43 H 0.96696 * 114.00090 * 180.02562 * 25 24 22 44 44 H 1.09005 * 109.58761 * 246.15739 * 26 18 16 45 45 H 1.08996 * 109.58779 * 6.58159 * 26 18 16 46 46 H 1.08001 * 119.96442 * 179.72341 * 27 13 12 47 47 H 1.08001 * 120.03926 * 180.25326 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 3.1032 1.6965 -1.2126 5 1 1.2845 2.7465 0.0006 6 1 3.1034 1.6965 1.2124 7 6 2.0089 -1.2007 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3684 -0.0005 10 6 2.0701 -3.5046 -0.1072 11 6 3.4573 -3.4390 -0.0984 12 6 4.2025 -4.5966 -0.2065 13 6 3.5688 -5.8203 -0.3241 14 6 4.3851 -7.0815 -0.4424 15 7 4.6471 -7.6209 0.8942 16 6 5.3648 -8.7529 1.0353 17 8 5.8711 -9.2770 0.0620 18 7 5.5212 -9.3040 2.2552 19 6 5.0159 -8.6226 3.4549 20 6 6.1581 -8.4878 4.4669 21 6 6.7637 -9.8683 4.7327 22 6 7.3317 -10.4405 3.4318 23 1 8.0878 -9.7626 3.0358 24 6 7.9638 -11.8062 3.7078 25 8 8.5924 -12.2892 2.5187 26 6 6.2005 -10.5974 2.4109 27 6 2.1876 -5.8884 -0.3384 28 6 1.4367 -4.7349 -0.2249 29 1 -0.4851 0.8400 0.0004 30 1 3.9528 -2.4836 -0.0073 31 1 5.2813 -4.5463 -0.1993 32 1 5.3309 -6.8572 -0.9355 33 1 3.8347 -7.8167 -1.0295 34 1 4.3040 -7.1633 1.6777 35 1 4.6481 -7.6326 3.1851 36 1 4.2064 -9.2063 3.8931 37 1 6.9257 -7.8275 4.0635 38 1 5.7723 -8.0721 5.3977 39 1 5.9904 -10.5344 5.1152 40 1 7.5623 -9.7787 5.4691 41 1 8.7079 -11.7093 4.4984 42 1 7.1906 -12.5079 4.0206 43 1 9.0147 -13.1531 2.6202 44 1 5.4893 -11.3435 2.7654 45 1 6.6143 -10.9105 1.4523 46 1 1.6956 -6.8450 -0.4348 47 1 0.3580 -4.7891 -0.2321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000069828482.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:15 Heat of formation + Delta-G solvation = -107.903584 kcal Electronic energy + Delta-G solvation = -28024.661952 eV Core-core repulsion = 23978.955079 eV Total energy + Delta-G solvation = -4045.706874 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.54057 -40.79183 -39.23366 -38.44201 -37.30376 -35.75981 -34.35551 -34.00165 -32.38230 -31.84413 -31.22277 -27.82796 -27.02498 -26.60825 -25.41483 -23.64880 -23.13566 -22.23411 -21.62340 -20.60638 -19.87416 -19.30000 -18.77287 -18.19935 -17.45872 -16.81752 -16.42783 -16.41238 -16.14442 -16.00458 -15.60305 -15.41689 -15.35342 -15.08874 -14.96132 -14.61936 -14.55891 -14.35725 -14.13471 -13.98418 -13.71333 -13.62758 -13.27690 -13.02138 -12.69377 -12.53400 -12.37941 -12.25276 -12.14167 -12.13005 -11.89936 -11.65947 -11.50941 -11.21039 -11.19856 -10.87597 -10.79781 -10.22164 -9.82013 -9.46921 -9.02619 -8.47986 -6.16255 0.51739 0.57122 1.36011 1.45251 1.51743 1.72186 2.10939 2.17330 2.74978 3.00935 3.20516 3.32217 3.48637 3.77132 3.83169 3.89025 4.02045 4.02551 4.06886 4.16936 4.24705 4.44244 4.45277 4.55752 4.56813 4.60094 4.67209 4.69825 4.73664 4.80176 4.86820 4.91453 5.02759 5.04194 5.12155 5.14173 5.22598 5.25894 5.42548 5.45606 5.51827 5.57150 5.68399 5.75204 5.93784 6.01260 6.14992 6.94843 6.95966 6.96698 7.53457 7.75417 8.74390 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021992 B = 0.001999 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1272.913214 B =14005.929370 C =14493.835235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.017 2.983 4 H -0.259 1.259 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.227 6.227 10 C 0.124 3.876 11 C -0.243 4.243 12 C -0.045 4.045 13 C -0.182 4.182 14 C 0.203 3.797 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.637 6.637 18 N -0.629 5.629 19 C 0.103 3.897 20 C -0.132 4.132 21 C -0.106 4.106 22 C -0.101 4.101 23 H 0.054 0.946 24 C 0.083 3.917 25 O -0.600 6.600 26 C 0.139 3.861 27 C -0.042 4.042 28 C -0.203 4.203 29 H 0.273 0.727 30 H 0.121 0.879 31 H 0.136 0.864 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.405 0.595 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.102 0.898 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.397 0.603 44 H 0.079 0.921 45 H 0.064 0.936 46 H 0.147 0.853 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.360 -21.823 12.618 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.219 4.219 3 Si 0.836 3.164 4 H -0.183 1.183 5 H -0.197 1.197 6 H -0.180 1.180 7 C -0.490 4.490 8 H 0.121 0.879 9 O -0.134 6.134 10 C 0.073 3.927 11 C -0.262 4.262 12 C -0.064 4.064 13 C -0.183 4.183 14 C 0.079 3.921 15 N -0.389 5.389 16 C 0.401 3.599 17 O -0.519 6.519 18 N -0.365 5.365 19 C -0.019 4.019 20 C -0.170 4.170 21 C -0.144 4.144 22 C -0.121 4.121 23 H 0.072 0.928 24 C 0.005 3.995 25 O -0.408 6.408 26 C 0.016 3.984 27 C -0.060 4.060 28 C -0.222 4.222 29 H 0.082 0.918 30 H 0.139 0.861 31 H 0.154 0.846 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.244 0.756 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.072 0.928 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.247 0.753 44 H 0.097 0.903 45 H 0.082 0.918 46 H 0.165 0.835 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.053 -21.455 11.695 28.188 hybrid contribution 0.110 0.804 0.220 0.841 sum 14.163 -20.651 11.915 27.731 Atomic orbital electron populations 1.70170 1.07980 1.28925 1.48466 1.26573 0.96834 1.02728 0.95792 0.84667 0.77411 0.74361 0.79930 1.18326 1.19723 1.18040 1.21785 0.92557 0.81337 1.53332 0.87944 1.83950 1.35996 1.12625 1.80783 1.19980 0.91563 0.87975 0.93199 1.21232 0.93038 0.99956 1.11972 1.20917 0.99706 0.90823 0.94944 1.19461 0.93517 0.93877 1.11448 1.19714 0.98004 0.91321 0.83054 1.45430 1.57386 1.25999 1.10075 1.16082 0.79347 0.80903 0.83578 1.90875 1.55557 1.65942 1.39546 1.47370 1.61312 1.22979 1.04856 1.21911 0.97368 0.97696 0.84974 1.21912 0.97588 0.97771 0.99709 1.21485 1.01355 0.96305 0.95222 1.21525 0.96648 0.97052 0.96836 0.92768 1.22233 0.96463 0.94055 0.86747 1.86507 1.75800 1.41671 1.36852 1.21446 0.93822 0.83193 0.99971 1.20866 0.92917 0.97062 0.95183 1.20443 1.00115 0.90320 1.11324 0.91792 0.86109 0.84625 0.91813 0.91225 0.75635 0.90121 0.89253 0.92799 0.88011 0.89713 0.89918 0.91634 0.91612 0.75330 0.90316 0.91788 0.83521 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.25 13.67 21.61 0.30 -54.95 16 2 C -0.02 -1.18 5.49 84.83 0.47 -0.72 16 3 Si 1.02 41.90 29.55 68.60 2.03 43.92 16 4 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 5 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.41 -23.46 9.49 67.92 0.64 -22.81 16 8 H 0.10 5.29 5.20 -2.91 -0.02 5.28 16 9 O -0.23 -13.27 9.76 -22.81 -0.22 -13.49 16 10 C 0.12 5.89 6.65 22.58 0.15 6.04 16 11 C -0.24 -10.05 9.17 22.39 0.21 -9.84 16 12 C -0.05 -1.49 9.69 22.25 0.22 -1.28 16 13 C -0.18 -5.43 5.25 -19.84 -0.10 -5.54 16 14 C 0.20 5.44 5.80 85.63 0.50 5.94 16 15 N -0.73 -18.15 5.46 -482.30 -2.63 -20.78 16 16 C 0.70 19.86 8.29 179.05 1.49 21.35 16 17 O -0.64 -23.69 15.77 -4.00 -0.06 -23.75 16 18 N -0.63 -13.32 2.97 -836.90 -2.49 -15.81 16 19 C 0.10 1.41 6.38 86.37 0.55 1.96 16 20 C -0.13 -1.41 6.09 30.69 0.19 -1.22 16 21 C -0.11 -0.95 5.16 30.63 0.16 -0.79 16 22 C -0.10 -1.49 2.58 -10.72 -0.03 -1.52 16 23 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 24 C 0.08 0.88 6.43 71.98 0.46 1.35 16 25 O -0.60 -9.11 13.31 -148.98 -1.98 -11.09 16 26 C 0.14 2.74 5.56 86.36 0.48 3.22 16 27 C -0.04 -1.31 9.69 22.25 0.22 -1.10 16 28 C -0.20 -8.13 9.99 22.39 0.22 -7.91 16 29 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 30 H 0.12 5.11 5.64 -2.91 -0.02 5.09 16 31 H 0.14 3.76 8.06 -2.91 -0.02 3.73 16 32 H 0.06 1.79 8.08 -2.39 -0.02 1.77 16 33 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.41 8.60 5.95 -92.71 -0.55 8.05 16 35 H 0.08 1.10 5.65 -2.39 -0.01 1.09 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 41 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 43 H 0.40 2.15 9.12 -74.06 -0.68 1.48 16 44 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 45 H 0.06 1.76 6.84 -2.39 -0.02 1.74 16 46 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 47 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -78.78 383.86 0.52 -78.26 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.22 Total: 30.56 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: 5.81 Total: -12.87 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -4.83 Total: -91.54 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -2.27 Total: -48.33 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.92 kcal Total: -78.78 0.52 -78.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069828482.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.645 kcal (2) G-P(sol) polarization free energy of solvation -78.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds