Wall clock time and date at job start Tue Mar 31 2020 23:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86806 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47174 * 270.00426 * 3 2 1 5 5 H 1.48498 * 109.46920 * 30.00567 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00381 * 3 2 1 7 7 C 1.39890 * 120.00575 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00589 * 175.55617 * 7 2 1 9 9 C 1.41163 * 119.99575 * 355.55291 * 7 2 1 10 10 C 1.40861 * 120.16154 * 214.78015 * 9 7 2 11 11 C 1.36381 * 119.82738 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.16849 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83642 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00467 * 144.76573 * 13 12 11 15 15 O 1.21579 * 119.99841 * 4.02981 * 14 13 12 16 16 N 1.34778 * 120.00121 * 184.03028 * 14 13 12 17 17 C 1.46497 * 119.99742 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47185 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.46854 * 59.99665 * 18 17 16 20 20 O 1.42893 * 109.46780 * 300.00211 * 18 17 16 21 21 C 1.52998 * 109.47001 * 179.97438 * 18 17 16 22 22 O 1.42899 * 109.46661 * 185.00212 * 21 18 17 23 23 C 1.42901 * 113.99711 * 180.02562 * 22 21 18 24 24 C 1.53011 * 109.47116 * 179.97438 * 23 22 21 25 25 C 1.53003 * 117.49838 * 243.74686 * 24 23 22 26 26 C 1.52993 * 117.49748 * 175.08274 * 24 23 22 27 27 C 1.39480 * 120.33063 * 0.26640 * 12 11 10 28 28 C 1.36371 * 120.17004 * 359.44904 * 27 12 11 29 29 H 0.96997 * 120.00231 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.09265 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.91946 * 179.97438 * 11 10 9 32 32 H 0.97008 * 119.99877 * 324.48749 * 13 12 11 33 33 H 0.97000 * 120.00081 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.47110 * 300.00186 * 17 16 14 35 35 H 1.08998 * 109.47498 * 60.00013 * 17 16 14 36 36 H 0.96700 * 114.00485 * 299.99438 * 20 18 17 37 37 H 1.09004 * 109.47460 * 304.99816 * 21 18 17 38 38 H 1.09001 * 109.47163 * 65.00601 * 21 18 17 39 39 H 1.08997 * 109.47380 * 299.99108 * 23 22 21 40 40 H 1.08994 * 109.47637 * 60.00095 * 23 22 21 41 41 H 1.09001 * 115.54440 * 29.41540 * 24 23 22 42 42 H 1.08995 * 117.49724 * 359.97438 * 25 24 23 43 43 H 1.09000 * 117.49505 * 145.02098 * 25 24 23 44 44 H 1.08997 * 117.49842 * 214.97529 * 26 24 23 45 45 H 1.08996 * 117.50595 * 0.02562 * 26 24 23 46 46 H 1.08006 * 119.91440 * 179.70678 * 27 12 11 47 47 H 1.08006 * 120.08717 * 180.27397 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0466 -1.4000 5 1 1.4403 2.6526 0.7002 6 1 3.5404 1.4402 0.7000 7 6 2.0084 -1.2114 -0.0005 8 1 3.0859 -1.2128 -0.0730 9 6 1.3058 -2.4321 0.0937 10 6 1.8652 -3.5184 0.7946 11 6 1.1807 -4.6948 0.8809 12 6 -0.0699 -4.8241 0.2770 13 7 -0.7625 -6.0285 0.3690 14 6 -2.1066 -6.0272 0.4678 15 8 -2.7199 -4.9794 0.4029 16 7 -2.7709 -7.1874 0.6386 17 6 -4.2320 -7.1859 0.7454 18 6 -4.7312 -8.6201 0.9322 19 1 -4.3007 -9.0390 1.8418 20 8 -4.3363 -9.4118 -0.1899 21 6 -6.2570 -8.6185 1.0444 22 8 -6.7146 -9.9407 1.3349 23 6 -8.1339 -10.0501 1.4602 24 6 -8.5083 -11.5012 1.7690 25 6 -9.3491 -12.2497 0.7327 26 6 -9.9802 -11.8054 2.0547 27 6 -0.6275 -3.7548 -0.4239 28 6 0.0424 -2.5705 -0.5139 29 1 -0.4850 0.8400 0.0004 30 1 2.8336 -3.4200 1.2624 31 1 1.6084 -5.5288 1.4176 32 1 -0.2778 -6.8688 0.3580 33 1 -2.2817 -8.0234 0.6900 34 1 -4.5332 -6.5816 1.6011 35 1 -4.6624 -6.7675 -0.1644 36 1 -4.6839 -9.0966 -1.0355 37 1 -6.5618 -7.9444 1.8450 38 1 -6.6903 -8.2829 0.1022 39 1 -8.4780 -9.4058 2.2692 40 1 -8.6058 -9.7444 0.5265 41 1 -7.7603 -12.0729 2.3183 42 1 -9.6358 -11.7082 -0.1688 43 1 -9.1545 -13.3140 0.6006 44 1 -10.2007 -12.5777 2.7916 45 1 -10.6820 -10.9721 2.0223 46 1 -1.5943 -3.8639 -0.8930 47 1 -0.3926 -1.7419 -1.0532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104985943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:34 Heat of formation + Delta-G solvation = -77.897926 kcal Electronic energy + Delta-G solvation = -27005.645161 eV Core-core repulsion = 22961.239431 eV Total energy + Delta-G solvation = -4044.405731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.99765 -39.13466 -38.02946 -37.28248 -36.44425 -34.49844 -34.05342 -32.81812 -30.82670 -29.43802 -28.85962 -27.61256 -25.61400 -24.40358 -22.85985 -22.28919 -21.46280 -21.06638 -20.99165 -19.94248 -18.02732 -17.57823 -17.22756 -16.98191 -16.96484 -16.31776 -15.63929 -15.43915 -15.15265 -14.98272 -14.72402 -14.53348 -14.03009 -13.89075 -13.67608 -13.20538 -13.03894 -12.82876 -12.65555 -12.41230 -12.04291 -12.01438 -11.68075 -11.64400 -11.40270 -11.19414 -11.13151 -10.96367 -10.88593 -10.72408 -10.46284 -10.42839 -9.95868 -9.93479 -9.84351 -9.57095 -9.07908 -8.90448 -8.70886 -7.46084 -6.81557 -6.53975 -4.27668 2.65974 2.79818 3.09894 3.13530 3.14661 3.17876 3.23064 3.43552 3.72248 4.02741 4.05619 4.25553 4.40369 4.44192 4.50429 4.62012 4.75400 4.77920 4.79599 4.82305 4.94767 5.05934 5.09729 5.15524 5.19061 5.40998 5.51996 5.62148 5.69027 5.71549 5.73960 6.18753 6.41363 6.53903 6.75820 6.85410 6.88730 7.10180 7.20379 7.29464 7.33825 7.43851 7.70625 7.88709 8.07271 8.14883 8.35349 8.51488 8.73283 8.98540 8.99326 9.14523 10.37098 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032720 B = 0.001569 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.538372 B =17837.740031 C =18420.572218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.264 1.264 7 C -0.464 4.464 8 H 0.075 0.925 9 C 0.098 3.902 10 C -0.203 4.203 11 C -0.116 4.116 12 C 0.025 3.975 13 N -0.668 5.668 14 C 0.695 3.305 15 O -0.576 6.576 16 N -0.747 5.747 17 C 0.113 3.887 18 C 0.101 3.899 19 H 0.113 0.887 20 O -0.549 6.549 21 C 0.034 3.966 22 O -0.375 6.375 23 C 0.092 3.908 24 C -0.153 4.153 25 C -0.177 4.177 26 C -0.175 4.175 27 C -0.094 4.094 28 C -0.142 4.142 29 H 0.277 0.723 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.392 0.608 33 H 0.397 0.603 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.376 0.624 37 H 0.063 0.937 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.108 0.892 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.008 -20.044 1.728 25.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.495 4.495 8 H 0.093 0.907 9 C 0.095 3.905 10 C -0.223 4.223 11 C -0.137 4.137 12 C -0.068 4.068 13 N -0.313 5.313 14 C 0.395 3.605 15 O -0.453 6.453 16 N -0.405 5.405 17 C -0.013 4.013 18 C 0.041 3.959 19 H 0.131 0.869 20 O -0.354 6.354 21 C -0.044 4.044 22 O -0.294 6.294 23 C 0.015 3.985 24 C -0.171 4.171 25 C -0.214 4.214 26 C -0.212 4.212 27 C -0.114 4.114 28 C -0.163 4.163 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.108 0.892 32 H 0.225 0.775 33 H 0.232 0.768 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.224 0.776 37 H 0.082 0.918 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.132 0.868 42 H 0.113 0.887 43 H 0.115 0.885 44 H 0.117 0.883 45 H 0.114 0.886 46 H 0.126 0.874 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -16.367 -19.390 2.171 25.467 hybrid contribution 0.200 0.532 -0.189 0.599 sum -16.167 -18.858 1.981 24.918 Atomic orbital electron populations 1.69795 1.07219 1.28633 1.38024 1.25875 0.94911 1.01088 0.92717 0.86222 0.80172 0.80691 0.78994 1.19579 1.20363 1.18799 1.19458 0.94600 0.90242 1.45218 0.90715 1.17720 0.92296 0.91875 0.88583 1.20672 1.01102 0.94580 1.05938 1.20056 0.95133 0.97544 1.00939 1.17092 0.94648 0.86434 1.08635 1.42089 1.04357 1.08482 1.76422 1.15998 0.82252 0.83695 0.78541 1.90938 1.67142 1.30039 1.57138 1.44878 1.06494 1.08429 1.80681 1.21629 0.80777 0.95791 1.03097 1.22122 0.91932 0.90468 0.91389 0.86896 1.86621 1.76265 1.55332 1.17210 1.23120 0.95406 0.85133 1.00736 1.87929 1.21255 1.28019 1.92173 1.22025 0.81725 0.94978 0.99735 1.22132 0.94578 0.96173 1.04263 1.23088 1.03843 1.01068 0.93401 1.22995 0.94719 1.03637 0.99818 1.20663 0.99046 0.93312 0.98426 1.21301 0.96962 0.95982 1.02010 0.91168 0.88563 0.89199 0.77543 0.76841 0.90579 0.91260 0.77619 0.91835 0.92498 0.92818 0.93157 0.86779 0.88659 0.88536 0.88336 0.88642 0.87439 0.85215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.92 10.60 55.54 0.59 -21.34 16 2 C 0.07 1.79 5.42 -17.34 -0.09 1.70 16 3 Si 0.91 19.37 29.56 -169.99 -5.03 14.34 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.46 -12.56 9.02 -37.85 -0.34 -12.90 16 8 H 0.07 1.92 7.85 -52.49 -0.41 1.51 16 9 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -4.97 9.74 -39.26 -0.38 -5.35 16 11 C -0.12 -2.58 9.90 -39.79 -0.39 -2.97 16 12 C 0.02 0.56 6.30 -83.57 -0.53 0.03 16 13 N -0.67 -12.00 5.31 -14.10 -0.07 -12.07 16 14 C 0.69 12.59 8.39 -86.92 -0.73 11.86 16 15 O -0.58 -13.12 13.78 5.30 0.07 -13.05 16 16 N -0.75 -9.47 5.45 -65.23 -0.36 -9.82 16 17 C 0.11 1.18 5.34 -4.04 -0.02 1.16 16 18 C 0.10 0.84 3.33 -26.73 -0.09 0.75 16 19 H 0.11 0.98 8.14 -51.93 -0.42 0.56 16 20 O -0.55 -4.99 13.05 -40.06 -0.52 -5.51 16 21 C 0.03 0.25 5.57 37.16 0.21 0.46 16 22 O -0.37 -3.47 10.31 -40.06 -0.41 -3.89 16 23 C 0.09 0.66 6.22 37.16 0.23 0.89 16 24 C -0.15 -1.04 6.05 -90.62 -0.55 -1.59 16 25 C -0.18 -1.02 10.18 -26.69 -0.27 -1.29 16 26 C -0.17 -0.91 10.25 -26.69 -0.27 -1.19 16 27 C -0.09 -2.39 8.61 -39.79 -0.34 -2.74 16 28 C -0.14 -3.89 8.62 -39.26 -0.34 -4.22 16 29 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 30 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 32 H 0.39 5.47 8.83 -40.82 -0.36 5.11 16 33 H 0.40 4.10 8.37 -40.82 -0.34 3.76 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.38 2.37 9.05 45.56 0.41 2.78 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 41 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.11 2.76 6.25 -52.48 -0.33 2.43 16 47 H 0.13 3.70 6.13 -52.48 -0.32 3.38 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -33.51 396.09 -10.65 -44.16 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -6.39 Total: 14.54 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -4.51 Total: -13.34 kcal Atomic # 7 Polarization: -43.39 SS G_CDS: 0.16 Total: -43.23 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.86 Total: -22.44 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.34 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.51 -10.65 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.734 kcal (2) G-P(sol) polarization free energy of solvation -33.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds