Wall clock time and date at job start Tue Mar 31 2020 23:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86806 * 119.99847 * 2 1 4 4 H 1.48497 * 109.47174 * 270.00426 * 3 2 1 5 5 H 1.48498 * 109.46920 * 30.00567 * 3 2 1 6 6 H 1.48503 * 109.47060 * 150.00381 * 3 2 1 7 7 C 1.39890 * 120.00575 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00589 * 175.55617 * 7 2 1 9 9 C 1.41163 * 119.99575 * 355.55291 * 7 2 1 10 10 C 1.40861 * 120.16154 * 214.78015 * 9 7 2 11 11 C 1.36381 * 119.82738 * 180.02562 * 10 9 7 12 12 C 1.39478 * 120.16849 * 0.02562 * 11 10 9 13 13 N 1.39237 * 119.83642 * 179.97438 * 12 11 10 14 14 C 1.34778 * 120.00467 * 144.76573 * 13 12 11 15 15 O 1.21579 * 119.99841 * 4.02981 * 14 13 12 16 16 N 1.34778 * 120.00121 * 184.03028 * 14 13 12 17 17 C 1.46497 * 119.99742 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47185 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.46854 * 59.99665 * 18 17 16 20 20 O 1.42893 * 109.46780 * 300.00211 * 18 17 16 21 21 C 1.52998 * 109.47001 * 179.97438 * 18 17 16 22 22 O 1.42899 * 109.46661 * 185.00212 * 21 18 17 23 23 C 1.42901 * 113.99711 * 180.02562 * 22 21 18 24 24 C 1.53011 * 109.47116 * 179.97438 * 23 22 21 25 25 C 1.53003 * 117.49838 * 243.74686 * 24 23 22 26 26 C 1.52993 * 117.49748 * 175.08274 * 24 23 22 27 27 C 1.39480 * 120.33063 * 0.26640 * 12 11 10 28 28 C 1.36371 * 120.17004 * 359.44904 * 27 12 11 29 29 H 0.96997 * 120.00231 * 359.97438 * 1 2 3 30 30 H 1.08000 * 120.09265 * 0.02562 * 10 9 7 31 31 H 1.08001 * 119.91946 * 179.97438 * 11 10 9 32 32 H 0.97008 * 119.99877 * 324.48749 * 13 12 11 33 33 H 0.97000 * 120.00081 * 359.97438 * 16 14 13 34 34 H 1.09001 * 109.47110 * 300.00186 * 17 16 14 35 35 H 1.08998 * 109.47498 * 60.00013 * 17 16 14 36 36 H 0.96700 * 114.00485 * 299.99438 * 20 18 17 37 37 H 1.09004 * 109.47460 * 304.99816 * 21 18 17 38 38 H 1.09001 * 109.47163 * 65.00601 * 21 18 17 39 39 H 1.08997 * 109.47380 * 299.99108 * 23 22 21 40 40 H 1.08994 * 109.47637 * 60.00095 * 23 22 21 41 41 H 1.09001 * 115.54440 * 29.41540 * 24 23 22 42 42 H 1.08995 * 117.49724 * 359.97438 * 25 24 23 43 43 H 1.09000 * 117.49505 * 145.02098 * 25 24 23 44 44 H 1.08997 * 117.49842 * 214.97529 * 26 24 23 45 45 H 1.08996 * 117.50595 * 0.02562 * 26 24 23 46 46 H 1.08006 * 119.91440 * 179.70678 * 27 12 11 47 47 H 1.08006 * 120.08717 * 180.27397 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4902 2.0466 -1.4000 5 1 1.4403 2.6526 0.7002 6 1 3.5404 1.4402 0.7000 7 6 2.0084 -1.2114 -0.0005 8 1 3.0859 -1.2128 -0.0730 9 6 1.3058 -2.4321 0.0937 10 6 1.8652 -3.5184 0.7946 11 6 1.1807 -4.6948 0.8809 12 6 -0.0699 -4.8241 0.2770 13 7 -0.7625 -6.0285 0.3690 14 6 -2.1066 -6.0272 0.4678 15 8 -2.7199 -4.9794 0.4029 16 7 -2.7709 -7.1874 0.6386 17 6 -4.2320 -7.1859 0.7454 18 6 -4.7312 -8.6201 0.9322 19 1 -4.3007 -9.0390 1.8418 20 8 -4.3363 -9.4118 -0.1899 21 6 -6.2570 -8.6185 1.0444 22 8 -6.7146 -9.9407 1.3349 23 6 -8.1339 -10.0501 1.4602 24 6 -8.5083 -11.5012 1.7690 25 6 -9.3491 -12.2497 0.7327 26 6 -9.9802 -11.8054 2.0547 27 6 -0.6275 -3.7548 -0.4239 28 6 0.0424 -2.5705 -0.5139 29 1 -0.4850 0.8400 0.0004 30 1 2.8336 -3.4200 1.2624 31 1 1.6084 -5.5288 1.4176 32 1 -0.2778 -6.8688 0.3580 33 1 -2.2817 -8.0234 0.6900 34 1 -4.5332 -6.5816 1.6011 35 1 -4.6624 -6.7675 -0.1644 36 1 -4.6839 -9.0966 -1.0355 37 1 -6.5618 -7.9444 1.8450 38 1 -6.6903 -8.2829 0.1022 39 1 -8.4780 -9.4058 2.2692 40 1 -8.6058 -9.7444 0.5265 41 1 -7.7603 -12.0729 2.3183 42 1 -9.6358 -11.7082 -0.1688 43 1 -9.1545 -13.3140 0.6006 44 1 -10.2007 -12.5777 2.7916 45 1 -10.6820 -10.9721 2.0223 46 1 -1.5943 -3.8639 -0.8930 47 1 -0.3926 -1.7419 -1.0532 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104985943.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:30 Heat of formation + Delta-G solvation = -101.929992 kcal Electronic energy + Delta-G solvation = -27006.687270 eV Core-core repulsion = 22961.239431 eV Total energy + Delta-G solvation = -4045.447839 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.82 seconds Orbital eigenvalues (eV) -41.43946 -39.88055 -39.22987 -38.45147 -37.08814 -36.17181 -35.32576 -34.59105 -31.75999 -31.34905 -30.57035 -28.35166 -26.92732 -25.73772 -23.32022 -23.25660 -22.99372 -22.73099 -21.65902 -21.44949 -19.39213 -19.19136 -18.62171 -17.74613 -17.64560 -17.47924 -17.03596 -16.55085 -16.06678 -16.00378 -15.80081 -15.64822 -15.57439 -15.07377 -14.80087 -14.56221 -14.41321 -13.94062 -13.86500 -13.63789 -13.51557 -13.28183 -13.18142 -12.83423 -12.63211 -12.40672 -12.29091 -12.19877 -11.85354 -11.78650 -11.68700 -11.44133 -11.34031 -11.21949 -11.09307 -10.90301 -10.53566 -10.48115 -10.12201 -9.41428 -8.68449 -8.46529 -6.29466 0.88592 1.16562 1.40061 1.47813 1.55329 1.66996 2.19768 2.26212 2.46257 2.85406 2.91498 3.33459 3.47933 3.68937 3.72688 3.87112 3.93454 3.97121 4.02805 4.23656 4.31711 4.36028 4.41478 4.46629 4.51466 4.56775 4.64639 4.68224 4.76813 4.98226 5.00505 5.02555 5.14085 5.19078 5.21950 5.23182 5.36430 5.41868 5.46528 5.72740 5.82193 6.11908 6.17898 6.18998 6.20644 6.40767 6.73570 6.74625 6.99494 7.06223 7.15370 7.66310 8.46503 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032720 B = 0.001569 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.538372 B =17837.740031 C =18420.572218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.022 3.978 3 Si 0.990 3.010 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.256 1.256 7 C -0.497 4.497 8 H 0.079 0.921 9 C 0.063 3.937 10 C -0.208 4.208 11 C -0.110 4.110 12 C 0.040 3.960 13 N -0.659 5.659 14 C 0.692 3.308 15 O -0.625 6.625 16 N -0.723 5.723 17 C 0.112 3.888 18 C 0.116 3.884 19 H 0.113 0.887 20 O -0.561 6.561 21 C 0.033 3.967 22 O -0.396 6.396 23 C 0.090 3.910 24 C -0.170 4.170 25 C -0.180 4.180 26 C -0.165 4.165 27 C -0.109 4.109 28 C -0.166 4.166 29 H 0.281 0.719 30 H 0.113 0.887 31 H 0.136 0.864 32 H 0.415 0.585 33 H 0.413 0.587 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.388 0.612 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.058 0.942 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.097 0.903 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.936 -21.724 2.505 27.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.477 5.477 2 C -0.189 4.189 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.198 1.198 6 H -0.179 1.179 7 C -0.528 4.528 8 H 0.097 0.903 9 C 0.061 3.939 10 C -0.228 4.228 11 C -0.130 4.130 12 C -0.054 4.054 13 N -0.307 5.307 14 C 0.393 3.607 15 O -0.506 6.506 16 N -0.381 5.381 17 C -0.013 4.013 18 C 0.056 3.944 19 H 0.131 0.869 20 O -0.369 6.369 21 C -0.044 4.044 22 O -0.316 6.316 23 C 0.013 3.987 24 C -0.188 4.188 25 C -0.217 4.217 26 C -0.202 4.202 27 C -0.129 4.129 28 C -0.186 4.186 29 H 0.092 0.908 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.252 0.748 33 H 0.250 0.750 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.238 0.762 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.115 0.885 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -16.303 -21.175 2.944 26.885 hybrid contribution 0.069 0.838 -0.430 0.944 sum -16.234 -20.336 2.515 26.143 Atomic orbital electron populations 1.69918 1.08912 1.29713 1.39145 1.26831 0.95675 1.04675 0.91701 0.85083 0.78793 0.75693 0.79337 1.18714 1.19809 1.17936 1.19752 0.94961 0.91169 1.46950 0.90281 1.18061 0.92695 0.93289 0.89880 1.20943 1.01855 0.94647 1.05321 1.20412 0.94422 0.98084 1.00060 1.17133 0.94778 0.87126 1.06404 1.41857 1.04530 1.08013 1.76274 1.16187 0.82106 0.84312 0.78143 1.90921 1.68084 1.32344 1.59208 1.44675 1.07397 1.07331 1.78653 1.21774 0.79172 0.97421 1.02925 1.21924 0.92596 0.88600 0.91255 0.86925 1.86595 1.76615 1.55601 1.18041 1.23132 0.94619 0.84848 1.01810 1.87888 1.22496 1.28811 1.92383 1.22133 0.80792 0.95337 1.00391 1.22147 0.95290 0.96126 1.05273 1.23164 1.03544 1.01217 0.93730 1.23079 0.93660 1.03922 0.99506 1.20669 0.98748 0.94009 0.99468 1.21160 0.97930 0.96181 1.03345 0.90830 0.86926 0.84669 0.74766 0.74984 0.91048 0.91318 0.76233 0.90914 0.91245 0.92126 0.92405 0.87917 0.88274 0.88251 0.87581 0.87763 0.88527 0.87775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -47.88 10.60 21.82 0.23 -47.65 16 2 C 0.02 1.18 5.42 85.23 0.46 1.64 16 3 Si 0.99 40.23 29.56 68.60 2.03 42.26 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 6 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 7 C -0.50 -27.62 9.02 23.39 0.21 -27.41 16 8 H 0.08 4.14 7.85 -2.91 -0.02 4.12 16 9 C 0.06 3.52 5.55 -21.28 -0.12 3.41 16 10 C -0.21 -10.04 9.74 22.48 0.22 -9.82 16 11 C -0.11 -4.61 9.90 22.14 0.22 -4.39 16 12 C 0.04 1.76 6.30 38.56 0.24 2.00 16 13 N -0.66 -22.30 5.31 -316.79 -1.68 -23.98 16 14 C 0.69 24.22 8.39 179.05 1.50 25.72 16 15 O -0.63 -28.65 13.78 -3.96 -0.05 -28.70 16 16 N -0.72 -16.87 5.45 -478.54 -2.61 -19.48 16 17 C 0.11 2.18 5.34 86.38 0.46 2.64 16 18 C 0.12 1.72 3.33 30.60 0.10 1.82 16 19 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 20 O -0.56 -9.00 13.05 -144.36 -1.88 -10.88 16 21 C 0.03 0.44 5.57 71.98 0.40 0.84 16 22 O -0.40 -6.79 10.31 -144.36 -1.49 -8.28 16 23 C 0.09 1.16 6.22 71.99 0.45 1.61 16 24 C -0.17 -2.15 6.05 -10.79 -0.07 -2.22 16 25 C -0.18 -1.86 10.18 30.62 0.31 -1.54 16 26 C -0.16 -1.47 10.25 30.62 0.31 -1.16 16 27 C -0.11 -5.66 8.61 22.13 0.19 -5.47 16 28 C -0.17 -9.47 8.62 22.48 0.19 -9.28 16 29 H 0.28 14.55 8.30 -92.71 -0.77 13.78 16 30 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 31 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 32 H 0.42 10.17 8.83 -92.70 -0.82 9.35 16 33 H 0.41 7.32 8.37 -92.71 -0.78 6.54 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.39 4.09 9.05 -74.06 -0.67 3.42 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 0.64 7.87 -2.39 -0.02 0.63 16 41 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.10 0.93 8.03 -2.39 -0.02 0.91 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 0.77 8.14 -2.39 -0.02 0.76 16 45 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.10 5.18 6.25 -2.91 -0.02 5.16 16 47 H 0.10 6.37 6.13 -2.91 -0.02 6.35 16 Total: -1.00 -75.23 396.09 -1.61 -76.84 By element: Atomic # 1 Polarization: 42.73 SS G_CDS: -1.25 Total: 41.48 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: 5.10 Total: -21.61 kcal Atomic # 7 Polarization: -87.05 SS G_CDS: -4.06 Total: -91.11 kcal Atomic # 8 Polarization: -44.44 SS G_CDS: -3.43 Total: -47.87 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.26 kcal Total: -75.23 -1.61 -76.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985943.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.087 kcal (2) G-P(sol) polarization free energy of solvation -75.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.82 seconds