Wall clock time and date at job start Tue Mar 31 2020 23:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30883 * 1 3 3 Si 1.86797 * 119.99793 * 2 1 4 4 H 1.48501 * 109.46990 * 269.99924 * 3 2 1 5 5 H 1.48495 * 109.47366 * 29.99761 * 3 2 1 6 6 H 1.48504 * 109.47262 * 150.00152 * 3 2 1 7 7 C 1.39892 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00307 * 175.55594 * 7 2 1 9 9 C 1.41159 * 120.00012 * 355.55973 * 7 2 1 10 10 C 1.40865 * 120.16521 * 214.78371 * 9 7 2 11 11 C 1.36376 * 119.82956 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16845 * 0.02562 * 11 10 9 13 13 N 1.39240 * 119.83092 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00358 * 35.29539 * 13 12 11 15 15 O 1.21578 * 120.00102 * 355.71319 * 14 13 12 16 16 N 1.34778 * 120.00010 * 175.71006 * 14 13 12 17 17 C 1.46502 * 119.99840 * 180.02562 * 16 14 13 18 18 C 1.53001 * 109.46960 * 179.97438 * 17 16 14 19 19 H 1.08991 * 109.47332 * 305.00209 * 18 17 16 20 20 O 1.42905 * 109.46852 * 65.00236 * 18 17 16 21 21 C 1.53000 * 109.46780 * 184.99976 * 18 17 16 22 22 O 1.42905 * 109.46927 * 175.00232 * 21 18 17 23 23 C 1.42895 * 114.00263 * 179.97438 * 22 21 18 24 24 C 1.52996 * 109.47628 * 180.02562 * 23 22 21 25 25 C 1.53006 * 117.49837 * 243.75175 * 24 23 22 26 26 C 1.52998 * 117.50318 * 175.08984 * 24 23 22 27 27 C 1.39475 * 120.33156 * 0.25557 * 12 11 10 28 28 C 1.36378 * 120.16929 * 359.44662 * 27 12 11 29 29 H 0.96995 * 120.00308 * 359.97438 * 1 2 3 30 30 H 1.07998 * 120.08402 * 359.97438 * 10 9 7 31 31 H 1.08004 * 119.91461 * 179.97438 * 11 10 9 32 32 H 0.97003 * 119.99756 * 215.29506 * 13 12 11 33 33 H 0.96994 * 120.00209 * 0.02562 * 16 14 13 34 34 H 1.09004 * 109.46941 * 59.99889 * 17 16 14 35 35 H 1.09002 * 109.47335 * 299.99937 * 17 16 14 36 36 H 0.96695 * 113.99676 * 59.99797 * 20 18 17 37 37 H 1.08998 * 109.47560 * 294.99959 * 21 18 17 38 38 H 1.08994 * 109.47430 * 55.00760 * 21 18 17 39 39 H 1.09007 * 109.47177 * 300.00405 * 23 22 21 40 40 H 1.09007 * 109.47139 * 59.99681 * 23 22 21 41 41 H 1.08998 * 115.55137 * 29.40933 * 24 23 22 42 42 H 1.08999 * 117.49597 * 359.97438 * 25 24 23 43 43 H 1.09000 * 117.50278 * 145.01858 * 25 24 23 44 44 H 1.09002 * 117.49837 * 214.97667 * 26 24 23 45 45 H 1.09005 * 117.49837 * 359.97438 * 26 24 23 46 46 H 1.08005 * 119.91327 * 179.69799 * 27 12 11 47 47 H 1.07998 * 120.08329 * 180.25127 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4902 2.0464 -1.4001 5 1 1.4402 2.6527 0.6999 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0859 -1.2129 -0.0719 9 6 1.3057 -2.4321 0.0957 10 6 1.8650 -3.5178 0.7977 11 6 1.1805 -4.6941 0.8849 12 6 -0.0700 -4.8239 0.2808 13 7 -0.7626 -6.0283 0.3738 14 6 -0.6810 -6.7675 1.4978 15 8 0.0578 -6.4229 2.3998 16 7 -1.4184 -7.8889 1.6218 17 6 -1.3300 -8.6921 2.8438 18 6 -2.2613 -9.9006 2.7281 19 1 -3.2721 -9.5602 2.5039 20 8 -1.8031 -10.7563 1.6793 21 6 -2.2639 -10.6707 4.0502 22 8 -3.2201 -11.7305 3.9821 23 6 -3.3023 -12.5166 5.1726 24 6 -4.3507 -13.6153 4.9870 25 6 -5.5845 -13.5744 5.8910 26 6 -4.5077 -14.6395 6.1128 27 6 -0.6276 -3.7552 -0.4208 28 6 0.0423 -2.5708 -0.5115 29 1 -0.4850 0.8400 0.0004 30 1 2.8337 -3.4192 1.2648 31 1 1.6082 -5.5276 1.4224 32 1 -1.3038 -6.3352 -0.3703 33 1 -2.0075 -8.1640 0.9021 34 1 -1.6269 -8.0857 3.6995 35 1 -0.3044 -9.0351 2.9799 36 1 -0.9082 -11.0973 1.8127 37 1 -1.2727 -11.0867 4.2304 38 1 -2.5279 -9.9951 4.8637 39 1 -2.3324 -12.9710 5.3757 40 1 -3.5874 -11.8795 6.0098 41 1 -4.4877 -13.9666 3.9643 42 1 -5.6490 -12.7649 6.6181 43 1 -6.5330 -13.8991 5.4631 44 1 -4.7482 -15.6645 5.8307 45 1 -3.8637 -14.5308 6.9855 46 1 -1.5942 -3.8647 -0.8901 47 1 -0.3926 -1.7429 -1.0517 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104985947.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:46:39 Heat of formation + Delta-G solvation = -101.905309 kcal Electronic energy + Delta-G solvation = -26928.708146 eV Core-core repulsion = 22883.261377 eV Total energy + Delta-G solvation = -4045.446769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 9.06 seconds Orbital eigenvalues (eV) -41.44370 -39.87791 -39.23601 -38.45066 -37.08306 -36.16815 -35.34514 -34.59867 -31.74357 -31.40754 -30.52078 -28.34791 -26.92972 -25.73738 -23.43167 -23.26457 -22.96537 -22.61379 -21.68947 -21.47835 -19.47655 -19.10422 -18.61403 -17.81188 -17.68978 -17.31565 -16.99370 -16.61251 -16.23867 -16.03689 -15.81022 -15.62662 -15.35340 -15.13930 -14.77384 -14.61478 -14.43928 -13.99981 -13.79033 -13.59511 -13.50892 -13.22532 -13.19883 -12.82590 -12.75413 -12.46478 -12.40525 -12.20998 -11.85705 -11.80790 -11.44585 -11.38693 -11.27505 -11.22586 -11.09398 -10.96335 -10.64930 -10.48331 -10.12033 -9.43971 -8.67065 -8.47678 -6.30123 0.86417 1.16885 1.40797 1.47894 1.55217 1.67132 2.19689 2.26398 2.46434 2.83576 2.91569 3.33828 3.46483 3.69039 3.70980 3.88147 3.94430 3.96358 4.03000 4.23631 4.32253 4.37139 4.41584 4.41799 4.54951 4.56272 4.65561 4.69012 4.76868 4.95172 4.99062 5.00652 5.15301 5.16977 5.22005 5.23333 5.34937 5.42400 5.46794 5.71383 5.83290 6.05276 6.13252 6.19640 6.26594 6.42289 6.70925 6.75256 6.99516 7.03593 7.14024 7.64491 8.45082 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.001506 C = 0.001498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.786146 B =18585.174194 C =18686.206923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.065 3.935 10 C -0.219 4.219 11 C -0.097 4.097 12 C 0.040 3.960 13 N -0.660 5.660 14 C 0.694 3.306 15 O -0.624 6.624 16 N -0.725 5.725 17 C 0.113 3.887 18 C 0.115 3.885 19 H 0.111 0.889 20 O -0.563 6.563 21 C 0.034 3.966 22 O -0.397 6.397 23 C 0.090 3.910 24 C -0.170 4.170 25 C -0.181 4.181 26 C -0.164 4.164 27 C -0.121 4.121 28 C -0.157 4.157 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.108 0.892 32 H 0.414 0.586 33 H 0.412 0.588 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.389 0.611 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.106 0.894 45 H 0.104 0.896 46 H 0.124 0.876 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 -24.666 8.028 27.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.063 3.937 10 C -0.239 4.239 11 C -0.118 4.118 12 C -0.054 4.054 13 N -0.307 5.307 14 C 0.394 3.606 15 O -0.504 6.504 16 N -0.382 5.382 17 C -0.012 4.012 18 C 0.055 3.945 19 H 0.129 0.871 20 O -0.370 6.370 21 C -0.044 4.044 22 O -0.317 6.317 23 C 0.014 3.986 24 C -0.188 4.188 25 C -0.218 4.218 26 C -0.201 4.201 27 C -0.141 4.141 28 C -0.177 4.177 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.126 0.874 32 H 0.251 0.749 33 H 0.249 0.751 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.238 0.762 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.142 0.858 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.133 -24.165 8.462 27.536 hybrid contribution 0.559 0.591 -0.055 0.815 sum -9.574 -23.574 8.407 26.797 Atomic orbital electron populations 1.69830 1.08555 1.29874 1.38856 1.26716 0.95796 1.04237 0.91617 0.85114 0.78668 0.75889 0.79447 1.18422 1.19447 1.18717 1.19709 0.94803 0.91364 1.47114 0.90998 1.18031 0.93428 0.92706 0.89581 1.20927 1.01573 0.95477 1.05908 1.20523 0.93704 0.97472 1.00081 1.17104 0.93053 0.86412 1.08815 1.41890 1.51520 1.20786 1.16539 1.16150 0.81195 0.80827 0.82412 1.90885 1.44299 1.72931 1.42301 1.44723 1.47345 1.24583 1.21539 1.21793 1.00645 0.91956 0.86802 1.21928 0.98374 0.87284 0.86912 0.87095 1.86606 1.37634 1.66607 1.46126 1.23133 0.93377 0.89938 0.97928 1.87891 1.60645 1.45145 1.37984 1.22130 0.98154 0.91523 0.86818 1.22147 0.99278 1.00040 0.97359 1.23171 0.93870 1.02189 1.02581 1.23077 1.02142 0.95582 0.99274 1.20533 0.99353 0.92018 1.02215 1.21151 0.97470 0.96329 1.02729 0.90547 0.88633 0.87384 0.74903 0.75099 0.90982 0.91010 0.76177 0.91029 0.90984 0.92014 0.92445 0.87953 0.88295 0.88279 0.87587 0.87712 0.85804 0.86335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.08 10.60 21.82 0.23 -44.84 16 2 C 0.03 1.45 5.42 85.23 0.46 1.91 16 3 Si 0.99 39.65 29.56 68.60 2.03 41.68 16 4 H -0.26 -9.90 7.11 99.48 0.71 -9.19 16 5 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 7 C -0.50 -27.84 9.02 23.39 0.21 -27.63 16 8 H 0.07 3.88 7.85 -2.91 -0.02 3.86 16 9 C 0.06 3.64 5.55 -21.28 -0.12 3.52 16 10 C -0.22 -11.61 9.74 22.48 0.22 -11.40 16 11 C -0.10 -4.81 8.61 22.13 0.19 -4.62 16 12 C 0.04 1.79 6.31 38.56 0.24 2.03 16 13 N -0.66 -22.38 5.31 -316.80 -1.68 -24.06 16 14 C 0.69 23.63 8.39 179.05 1.50 25.13 16 15 O -0.62 -27.17 13.76 -3.96 -0.05 -27.22 16 16 N -0.72 -16.52 5.51 -478.53 -2.64 -19.15 16 17 C 0.11 2.09 5.31 86.38 0.46 2.55 16 18 C 0.11 1.65 3.28 30.59 0.10 1.75 16 19 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 20 O -0.56 -8.84 13.25 -144.35 -1.91 -10.76 16 21 C 0.03 0.42 5.57 71.98 0.40 0.83 16 22 O -0.40 -6.68 10.31 -144.35 -1.49 -8.17 16 23 C 0.09 1.13 6.22 71.98 0.45 1.58 16 24 C -0.17 -2.11 6.05 -10.79 -0.07 -2.18 16 25 C -0.18 -1.86 10.18 30.62 0.31 -1.55 16 26 C -0.16 -1.42 10.25 30.62 0.31 -1.11 16 27 C -0.12 -5.49 9.90 22.13 0.22 -5.27 16 28 C -0.16 -8.29 8.61 22.48 0.19 -8.09 16 29 H 0.28 13.79 8.30 -92.71 -0.77 13.02 16 30 H 0.10 4.88 8.06 -2.91 -0.02 4.85 16 31 H 0.11 5.30 6.22 -2.91 -0.02 5.28 16 32 H 0.41 10.49 8.83 -92.71 -0.82 9.67 16 33 H 0.41 7.24 8.49 -92.71 -0.79 6.45 16 34 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.39 3.81 9.04 -74.06 -0.67 3.14 16 37 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.06 0.63 7.88 -2.38 -0.02 0.61 16 41 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.10 0.93 8.03 -2.39 -0.02 0.91 16 43 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.12 4.71 8.06 -2.91 -0.02 4.69 16 47 H 0.12 6.52 6.13 -2.91 -0.02 6.50 16 Total: -1.00 -72.65 396.36 -1.68 -74.33 By element: Atomic # 1 Polarization: 41.99 SS G_CDS: -1.26 Total: 40.72 kcal Atomic # 6 Polarization: -27.62 SS G_CDS: 5.09 Total: -22.53 kcal Atomic # 7 Polarization: -83.97 SS G_CDS: -4.09 Total: -88.06 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -3.46 Total: -46.15 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -72.65 -1.68 -74.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104985947.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.571 kcal (2) G-P(sol) polarization free energy of solvation -72.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.06 seconds