Wall clock time and date at job start Wed Apr 1 2020 00:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48506 * 109.47291 * 240.00102 * 3 2 1 5 5 H 1.48505 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47509 * 120.00052 * 3 2 1 7 7 C 1.38951 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99563 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99600 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00108 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00110 * 180.02562 * 10 9 7 13 13 N 1.46888 * 109.47619 * 180.02562 * 12 10 9 14 14 C 1.46908 * 111.00338 * 170.13348 * 13 12 10 15 15 C 1.50698 * 109.47064 * 191.74275 * 14 13 12 16 16 C 1.38160 * 120.03104 * 254.24893 * 15 14 13 17 17 C 1.38247 * 120.05601 * 179.77108 * 16 15 14 18 18 C 1.38284 * 120.11168 * 0.51179 * 17 16 15 19 19 C 1.38121 * 120.05491 * 359.74484 * 18 17 16 20 20 C 1.38714 * 120.02704 * 74.52885 * 15 14 13 21 21 O 1.35904 * 120.05704 * 359.97438 * 20 15 14 22 22 C 1.46901 * 110.99946 * 294.08981 * 13 12 10 23 23 C 1.53006 * 109.46660 * 293.99999 * 22 13 12 24 24 H 1.09000 * 110.33068 * 309.57523 * 23 22 13 25 25 C 1.54488 * 110.36796 * 187.32798 * 23 22 13 26 26 C 1.54511 * 104.05840 * 217.19195 * 25 23 22 27 27 C 1.54476 * 104.06527 * 0.02562 * 26 25 23 28 28 O 1.44424 * 110.37281 * 71.83071 * 23 22 13 29 29 H 0.96996 * 120.00318 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00052 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46938 * 300.00515 * 12 10 9 32 32 H 1.09006 * 109.46930 * 59.99651 * 12 10 9 33 33 H 1.08997 * 109.46766 * 311.74456 * 14 13 12 34 34 H 1.08992 * 109.46842 * 71.74394 * 14 13 12 35 35 H 1.08008 * 119.96837 * 0.03055 * 16 15 14 36 36 H 1.08002 * 119.94353 * 180.25627 * 17 16 15 37 37 H 1.08004 * 119.97189 * 179.72740 * 18 17 16 38 38 H 1.08002 * 120.02838 * 179.97438 * 19 18 17 39 39 H 0.96700 * 113.99977 * 89.99387 * 21 20 15 40 40 H 1.08988 * 109.47570 * 53.99935 * 22 13 12 41 41 H 1.09000 * 109.47125 * 174.00604 * 22 13 12 42 42 H 1.08996 * 110.51007 * 335.83485 * 25 23 22 43 43 H 1.08997 * 110.51054 * 98.41275 * 25 23 22 44 44 H 1.08996 * 110.51233 * 118.64851 * 26 25 23 45 45 H 1.09001 * 110.50490 * 241.22048 * 26 25 23 46 46 H 1.09005 * 110.37237 * 142.81383 * 27 26 25 47 47 H 1.09003 * 110.37012 * 265.03769 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9974 -3.5577 0.0026 11 8 3.2103 -3.5577 0.0031 12 6 1.2440 -4.8629 0.0032 13 7 2.1985 -5.9794 0.0050 14 6 1.5135 -7.2574 0.2406 15 6 2.5341 -8.3299 0.5221 16 6 2.8231 -9.2789 -0.4395 17 6 3.7627 -10.2602 -0.1835 18 6 4.4078 -10.3009 1.0390 19 6 4.1186 -9.3577 2.0056 20 6 3.1799 -8.3686 1.7492 21 8 2.8936 -7.4394 2.6987 22 6 2.9671 -6.0169 -1.2464 23 6 2.0292 -6.3402 -2.4113 24 1 1.4289 -7.2204 -2.1811 25 6 2.8394 -6.5658 -3.7072 26 6 1.9592 -5.9422 -4.8135 27 6 0.7218 -5.4132 -4.0550 28 8 1.1762 -5.2107 -2.6984 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6169 -4.9200 0.8930 32 1 0.6176 -4.9213 -0.8870 33 1 0.8447 -7.1589 1.0955 34 1 0.9361 -7.5284 -0.6432 35 1 2.3176 -9.2516 -1.3935 36 1 3.9902 -10.9987 -0.9380 37 1 5.1383 -11.0712 1.2381 38 1 4.6224 -9.3902 2.9603 39 1 2.1735 -7.6925 3.2923 40 1 3.4346 -5.0469 -1.4149 41 1 3.7378 -6.7845 -1.1766 42 1 3.8005 -6.0548 -3.6505 43 1 2.9842 -7.6311 -3.8866 44 1 2.4852 -5.1231 -5.3037 45 1 1.6688 -6.6989 -5.5423 46 1 0.3854 -4.4711 -4.4881 47 1 -0.0816 -6.1495 -4.0794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109761808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:28 Heat of formation + Delta-G solvation = -79.625241 kcal Electronic energy + Delta-G solvation = -30050.862475 eV Core-core repulsion = 26006.381842 eV Total energy + Delta-G solvation = -4044.480633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.24260 -39.36900 -38.02176 -36.55662 -36.13041 -33.68315 -32.08395 -31.68187 -31.05362 -30.11015 -29.67617 -27.24301 -26.01176 -24.56858 -22.93458 -22.58079 -21.99163 -21.18278 -20.15863 -18.89532 -18.23334 -17.64892 -16.74341 -16.36063 -15.87707 -15.65612 -15.60570 -15.29243 -15.16384 -14.63979 -14.33454 -14.25381 -13.88858 -13.63224 -13.52687 -13.33771 -13.06688 -12.65443 -12.26532 -12.15935 -11.96787 -11.85457 -11.66606 -11.54732 -11.41321 -11.19409 -11.17790 -11.12883 -10.84385 -10.71285 -10.54561 -10.33959 -10.31478 -10.06102 -9.53565 -9.27817 -8.93288 -8.56850 -8.21762 -7.77900 -7.57194 -6.25575 -3.64946 1.23251 1.26189 3.30043 3.33809 3.38974 3.55897 3.96713 4.17498 4.23699 4.29843 4.44819 4.66856 4.74977 4.77978 4.83894 4.95720 4.96747 5.11666 5.15297 5.27503 5.33925 5.41577 5.44210 5.53078 5.56831 5.59540 5.72449 5.73231 5.83537 5.86805 5.92040 5.98815 6.00079 6.06605 6.13561 6.28326 6.37240 6.40703 6.51680 6.57029 6.66444 6.78182 7.04319 7.45145 7.55557 7.69966 7.81327 8.24555 8.81817 9.36015 9.75528 10.29126 10.92783 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011984 B = 0.003712 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.937001 B = 7542.277620 C = 9161.091867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.020 3.980 3 Si 0.927 3.073 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.292 4.292 8 H 0.100 0.900 9 N -0.568 5.568 10 C 0.460 3.540 11 O -0.580 6.580 12 C 0.037 3.963 13 N -0.494 5.494 14 C 0.092 3.908 15 C -0.098 4.098 16 C -0.101 4.101 17 C -0.134 4.134 18 C -0.108 4.108 19 C -0.151 4.151 20 C 0.135 3.865 21 O -0.479 6.479 22 C 0.058 3.942 23 C 0.033 3.967 24 H 0.064 0.936 25 C -0.145 4.145 26 C -0.153 4.153 27 C 0.039 3.961 28 O -0.352 6.352 29 H 0.269 0.731 30 H 0.391 0.609 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.042 0.958 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.126 0.874 39 H 0.383 0.617 40 H 0.112 0.888 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.070 0.930 46 H 0.089 0.911 47 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.369 -21.831 -3.771 22.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.181 4.181 3 Si 0.755 3.245 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.421 4.421 8 H 0.118 0.882 9 N -0.205 5.205 10 C 0.246 3.754 11 O -0.464 6.464 12 C -0.094 4.094 13 N -0.215 5.215 14 C -0.035 4.035 15 C -0.099 4.099 16 C -0.120 4.120 17 C -0.153 4.153 18 C -0.127 4.127 19 C -0.170 4.170 20 C 0.090 3.910 21 O -0.288 6.288 22 C -0.070 4.070 23 C -0.026 4.026 24 H 0.082 0.918 25 C -0.184 4.184 26 C -0.190 4.190 27 C -0.038 4.038 28 O -0.271 6.271 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.060 0.940 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.144 0.856 39 H 0.238 0.762 40 H 0.130 0.870 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.779 -21.054 -3.472 21.412 hybrid contribution -1.108 0.273 -0.645 1.311 sum 0.671 -20.781 -4.117 21.196 Atomic orbital electron populations 1.69610 1.05832 1.27851 1.51529 1.25194 0.95577 0.99443 0.97872 0.85976 0.78742 0.80863 0.78936 1.20104 1.21138 1.20028 1.19616 0.93204 0.82382 1.46929 0.88216 1.41786 1.09045 1.04469 1.65170 1.19645 0.88206 0.84488 0.83049 1.90460 1.13927 1.87004 1.55058 1.22081 0.94318 0.90850 1.02133 1.61767 1.25200 1.00429 1.34121 1.20967 0.93488 0.88572 1.00507 1.20186 0.98896 0.96466 0.94392 1.20952 0.97992 0.94661 0.98407 1.21061 0.97640 0.99277 0.97280 1.20972 0.99607 0.98578 0.93504 1.21455 0.99929 0.94976 1.00622 1.18299 0.95176 0.88279 0.89252 1.85002 1.57115 1.41954 1.44696 1.22552 0.94871 1.05248 0.84357 1.23955 0.92331 0.89677 0.96665 0.91843 1.22894 1.00146 1.00997 0.94328 1.22895 0.97040 1.00824 0.98289 1.23407 0.95648 1.01072 0.83637 1.89354 1.65261 1.44101 1.28408 0.92112 0.77644 0.90274 0.90499 0.90228 0.93975 0.86229 0.86151 0.86034 0.85643 0.76216 0.86972 0.90357 0.90371 0.91098 0.90715 0.91084 0.89224 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.63 13.05 55.50 0.72 -24.91 16 2 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.95 29.55 -169.99 -5.02 16.92 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.29 -8.50 9.68 -14.93 -0.14 -8.64 16 8 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.57 -15.23 5.29 -10.96 -0.06 -15.29 16 10 C 0.46 11.58 7.46 -10.99 -0.08 11.50 16 11 O -0.58 -16.50 13.91 5.55 0.08 -16.43 16 12 C 0.04 0.72 5.06 -4.98 -0.03 0.69 16 13 N -0.49 -8.73 4.43 -237.52 -1.05 -9.78 16 14 C 0.09 1.26 4.48 -4.97 -0.02 1.23 16 15 C -0.10 -1.25 4.49 -104.48 -0.47 -1.72 16 16 C -0.10 -1.09 9.26 -39.61 -0.37 -1.46 16 17 C -0.13 -1.30 10.04 -39.56 -0.40 -1.69 16 18 C -0.11 -1.06 10.04 -39.61 -0.40 -1.46 16 19 C -0.15 -1.71 9.99 -39.43 -0.39 -2.10 16 20 C 0.14 1.77 6.68 -39.22 -0.26 1.51 16 21 O -0.48 -6.54 12.85 -19.44 -0.25 -6.79 16 22 C 0.06 1.00 4.51 -3.82 -0.02 0.98 16 23 C 0.03 0.47 2.92 -25.95 -0.08 0.40 16 24 H 0.06 0.81 5.62 -51.93 -0.29 0.52 16 25 C -0.15 -1.74 6.63 -25.16 -0.17 -1.90 16 26 C -0.15 -1.71 7.09 -25.16 -0.18 -1.88 16 27 C 0.04 0.51 7.63 37.93 0.29 0.80 16 28 O -0.35 -5.92 8.39 -35.23 -0.30 -6.22 16 29 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 30 H 0.39 10.14 7.90 -40.82 -0.32 9.82 16 31 H 0.08 1.43 7.91 -51.93 -0.41 1.01 16 32 H 0.08 1.46 5.10 -51.93 -0.26 1.20 16 33 H 0.08 1.01 7.77 -51.93 -0.40 0.61 16 34 H 0.04 0.53 5.49 -51.93 -0.29 0.24 16 35 H 0.12 1.10 7.82 -52.48 -0.41 0.69 16 36 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 39 H 0.38 3.25 9.06 45.56 0.41 3.66 16 40 H 0.11 2.44 5.79 -51.94 -0.30 2.14 16 41 H 0.08 1.27 7.09 -51.93 -0.37 0.91 16 42 H 0.08 1.01 7.87 -51.93 -0.41 0.60 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -34.99 378.04 -8.93 -43.93 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -5.95 Total: 16.17 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.81 Total: -3.30 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -0.39 Total: -49.98 kcal Atomic # 8 Polarization: -28.97 SS G_CDS: -0.47 Total: -29.44 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.99 -8.93 -43.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109761808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.700 kcal (2) G-P(sol) polarization free energy of solvation -34.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds