Wall clock time and date at job start Wed Apr 1 2020 00:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86802 * 119.99825 * 2 1 4 4 H 1.48506 * 109.47291 * 240.00102 * 3 2 1 5 5 H 1.48505 * 109.47241 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47509 * 120.00052 * 3 2 1 7 7 C 1.38951 * 120.00463 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.37103 * 119.99563 * 359.97438 * 7 2 1 10 10 C 1.34771 * 119.99600 * 180.02562 * 9 7 2 11 11 O 1.21288 * 120.00108 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00110 * 180.02562 * 10 9 7 13 13 N 1.46888 * 109.47619 * 180.02562 * 12 10 9 14 14 C 1.46908 * 111.00338 * 170.13348 * 13 12 10 15 15 C 1.50698 * 109.47064 * 191.74275 * 14 13 12 16 16 C 1.38160 * 120.03104 * 254.24893 * 15 14 13 17 17 C 1.38247 * 120.05601 * 179.77108 * 16 15 14 18 18 C 1.38284 * 120.11168 * 0.51179 * 17 16 15 19 19 C 1.38121 * 120.05491 * 359.74484 * 18 17 16 20 20 C 1.38714 * 120.02704 * 74.52885 * 15 14 13 21 21 O 1.35904 * 120.05704 * 359.97438 * 20 15 14 22 22 C 1.46901 * 110.99946 * 294.08981 * 13 12 10 23 23 C 1.53006 * 109.46660 * 293.99999 * 22 13 12 24 24 H 1.09000 * 110.33068 * 309.57523 * 23 22 13 25 25 C 1.54488 * 110.36796 * 187.32798 * 23 22 13 26 26 C 1.54511 * 104.05840 * 217.19195 * 25 23 22 27 27 C 1.54476 * 104.06527 * 0.02562 * 26 25 23 28 28 O 1.44424 * 110.37281 * 71.83071 * 23 22 13 29 29 H 0.96996 * 120.00318 * 359.97438 * 1 2 3 30 30 H 0.96993 * 120.00052 * 0.02562 * 9 7 2 31 31 H 1.09006 * 109.46938 * 300.00515 * 12 10 9 32 32 H 1.09006 * 109.46930 * 59.99651 * 12 10 9 33 33 H 1.08997 * 109.46766 * 311.74456 * 14 13 12 34 34 H 1.08992 * 109.46842 * 71.74394 * 14 13 12 35 35 H 1.08008 * 119.96837 * 0.03055 * 16 15 14 36 36 H 1.08002 * 119.94353 * 180.25627 * 17 16 15 37 37 H 1.08004 * 119.97189 * 179.72740 * 18 17 16 38 38 H 1.08002 * 120.02838 * 179.97438 * 19 18 17 39 39 H 0.96700 * 113.99977 * 89.99387 * 21 20 15 40 40 H 1.08988 * 109.47570 * 53.99935 * 22 13 12 41 41 H 1.09000 * 109.47125 * 174.00604 * 22 13 12 42 42 H 1.08996 * 110.51007 * 335.83485 * 25 23 22 43 43 H 1.08997 * 110.51054 * 98.41275 * 25 23 22 44 44 H 1.08996 * 110.51233 * 118.64851 * 26 25 23 45 45 H 1.09001 * 110.50490 * 241.22048 * 26 25 23 46 46 H 1.09005 * 110.37237 * 142.81383 * 27 26 25 47 47 H 1.09003 * 110.37012 * 265.03769 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2830 2.7465 -0.0006 6 1 3.1018 1.6966 1.2124 7 6 2.0090 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3234 -2.3906 0.0016 10 6 1.9974 -3.5577 0.0026 11 8 3.2103 -3.5577 0.0031 12 6 1.2440 -4.8629 0.0032 13 7 2.1985 -5.9794 0.0050 14 6 1.5135 -7.2574 0.2406 15 6 2.5341 -8.3299 0.5221 16 6 2.8231 -9.2789 -0.4395 17 6 3.7627 -10.2602 -0.1835 18 6 4.4078 -10.3009 1.0390 19 6 4.1186 -9.3577 2.0056 20 6 3.1799 -8.3686 1.7492 21 8 2.8936 -7.4394 2.6987 22 6 2.9671 -6.0169 -1.2464 23 6 2.0292 -6.3402 -2.4113 24 1 1.4289 -7.2204 -2.1811 25 6 2.8394 -6.5658 -3.7072 26 6 1.9592 -5.9422 -4.8135 27 6 0.7218 -5.4132 -4.0550 28 8 1.1762 -5.2107 -2.6984 29 1 -0.4850 0.8400 0.0004 30 1 0.3535 -2.3907 0.0016 31 1 0.6169 -4.9200 0.8930 32 1 0.6176 -4.9213 -0.8870 33 1 0.8447 -7.1589 1.0955 34 1 0.9361 -7.5284 -0.6432 35 1 2.3176 -9.2516 -1.3935 36 1 3.9902 -10.9987 -0.9380 37 1 5.1383 -11.0712 1.2381 38 1 4.6224 -9.3902 2.9603 39 1 2.1735 -7.6925 3.2923 40 1 3.4346 -5.0469 -1.4149 41 1 3.7378 -6.7845 -1.1766 42 1 3.8005 -6.0548 -3.6505 43 1 2.9842 -7.6311 -3.8866 44 1 2.4852 -5.1231 -5.3037 45 1 1.6688 -6.6989 -5.5423 46 1 0.3854 -4.4711 -4.4881 47 1 -0.0816 -6.1495 -4.0794 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109761808.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:27 Heat of formation + Delta-G solvation = -106.423492 kcal Electronic energy + Delta-G solvation = -30052.024534 eV Core-core repulsion = 26006.381842 eV Total energy + Delta-G solvation = -4045.642692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 15.84 seconds Orbital eigenvalues (eV) -41.34291 -40.39643 -39.80223 -37.64612 -37.34366 -35.80656 -33.28107 -33.07249 -32.64970 -31.21928 -30.63656 -28.71561 -27.10440 -26.46698 -24.20885 -23.44706 -22.99195 -22.14923 -21.39867 -20.75256 -19.77038 -19.14354 -17.95858 -17.69441 -16.97722 -16.89738 -16.68492 -16.52393 -16.27269 -16.22759 -15.86505 -15.75416 -15.22547 -15.03514 -14.70848 -14.55750 -14.38602 -13.83046 -13.58416 -13.45198 -13.16173 -13.10221 -12.93331 -12.85219 -12.73207 -12.60948 -12.42549 -12.39123 -12.25042 -12.14356 -12.07684 -11.92745 -11.52127 -11.39867 -11.22150 -10.63670 -10.19194 -9.93413 -9.75964 -9.41056 -8.96195 -8.41394 -5.89308 0.39872 0.45481 1.39791 1.40382 1.51635 2.16852 2.31145 2.65965 2.92640 3.10411 3.26075 3.47012 3.51793 3.66687 3.82911 3.83711 3.89346 4.05031 4.18233 4.22495 4.26398 4.36254 4.39656 4.49786 4.52139 4.59189 4.63034 4.68402 4.73713 4.77307 4.82087 4.92260 4.99348 5.04437 5.07127 5.13595 5.16626 5.26859 5.43702 5.50238 5.61712 5.65843 5.93174 5.99301 6.03145 6.14617 6.32004 6.67857 7.01951 7.19279 7.64690 8.22373 8.76427 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011984 B = 0.003712 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.937001 B = 7542.277620 C = 9161.091867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C -0.015 4.015 3 Si 0.991 3.009 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.273 1.273 7 C -0.329 4.329 8 H 0.074 0.926 9 N -0.577 5.577 10 C 0.456 3.544 11 O -0.618 6.618 12 C 0.053 3.947 13 N -0.514 5.514 14 C 0.097 3.903 15 C -0.117 4.117 16 C -0.102 4.102 17 C -0.133 4.133 18 C -0.106 4.106 19 C -0.165 4.165 20 C 0.112 3.888 21 O -0.506 6.506 22 C 0.067 3.933 23 C 0.038 3.962 24 H 0.088 0.912 25 C -0.143 4.143 26 C -0.146 4.146 27 C 0.032 3.968 28 O -0.393 6.393 29 H 0.276 0.724 30 H 0.393 0.607 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.059 0.941 35 H 0.139 0.861 36 H 0.151 0.849 37 H 0.148 0.852 38 H 0.132 0.868 39 H 0.399 0.601 40 H 0.058 0.942 41 H 0.085 0.915 42 H 0.059 0.941 43 H 0.104 0.896 44 H 0.064 0.936 45 H 0.104 0.896 46 H 0.081 0.919 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 -24.084 -4.995 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.214 4.214 3 Si 0.815 3.185 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.198 1.198 7 C -0.458 4.458 8 H 0.092 0.908 9 N -0.214 5.214 10 C 0.244 3.756 11 O -0.505 6.505 12 C -0.077 4.077 13 N -0.236 5.236 14 C -0.029 4.029 15 C -0.118 4.118 16 C -0.121 4.121 17 C -0.151 4.151 18 C -0.124 4.124 19 C -0.183 4.183 20 C 0.067 3.933 21 O -0.317 6.317 22 C -0.061 4.061 23 C -0.020 4.020 24 H 0.106 0.894 25 C -0.181 4.181 26 C -0.184 4.184 27 C -0.045 4.045 28 O -0.314 6.314 29 H 0.085 0.915 30 H 0.226 0.774 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.157 0.843 36 H 0.168 0.832 37 H 0.166 0.834 38 H 0.150 0.850 39 H 0.257 0.743 40 H 0.077 0.923 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.083 0.917 45 H 0.122 0.878 46 H 0.099 0.901 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.311 -23.335 -4.695 23.839 hybrid contribution -0.940 0.894 -0.243 1.320 sum 0.371 -22.441 -4.938 22.981 Atomic orbital electron populations 1.69679 1.06772 1.29092 1.50942 1.25999 0.96547 1.02221 0.96613 0.85024 0.77781 0.76859 0.78840 1.19859 1.19278 1.19803 1.19578 0.92467 0.84175 1.49596 0.90766 1.41857 1.09033 1.04649 1.65888 1.20668 0.88085 0.85873 0.80983 1.90433 1.15937 1.87858 1.56238 1.21875 0.93986 0.88654 1.03211 1.61688 1.25477 1.01645 1.34798 1.20980 0.93847 0.86763 1.01326 1.20177 0.99579 0.97077 0.95004 1.21203 0.98098 0.94180 0.98570 1.21437 0.96599 0.99265 0.97758 1.21345 0.99557 0.98370 0.93127 1.21642 0.99822 0.95228 1.01641 1.18598 0.96280 0.88906 0.89528 1.84943 1.58206 1.43126 1.45456 1.22273 0.95655 1.02385 0.85834 1.23923 0.92108 0.89585 0.96419 0.89418 1.22912 0.98962 1.02939 0.93332 1.22885 0.95857 1.01308 0.98360 1.23615 0.97093 1.01600 0.82156 1.89289 1.65930 1.45582 1.30558 0.91460 0.77390 0.88754 0.89560 0.89788 0.92318 0.84344 0.83165 0.83405 0.85017 0.74345 0.92348 0.89670 0.92211 0.87744 0.91737 0.87791 0.90096 0.90514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.52 13.05 21.66 0.28 -52.24 16 2 C -0.01 -0.84 5.50 84.93 0.47 -0.37 16 3 Si 0.99 45.37 29.55 68.60 2.03 47.40 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 5 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 6 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 7 C -0.33 -19.95 9.68 84.04 0.81 -19.14 16 8 H 0.07 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.58 -32.32 5.29 -306.99 -1.62 -33.94 16 10 C 0.46 24.06 7.46 87.66 0.65 24.71 16 11 O -0.62 -37.29 13.91 -3.05 -0.04 -37.33 16 12 C 0.05 2.13 5.06 85.56 0.43 2.56 16 13 N -0.51 -18.37 4.43 -905.38 -4.01 -22.38 16 14 C 0.10 2.55 4.48 85.55 0.38 2.93 16 15 C -0.12 -2.82 4.49 -19.77 -0.09 -2.91 16 16 C -0.10 -1.90 9.26 22.25 0.21 -1.70 16 17 C -0.13 -2.09 10.04 22.28 0.22 -1.87 16 18 C -0.11 -1.79 10.04 22.25 0.22 -1.57 16 19 C -0.16 -3.54 9.99 22.36 0.22 -3.32 16 20 C 0.11 2.88 6.68 22.51 0.15 3.03 16 21 O -0.51 -14.13 12.85 -92.47 -1.19 -15.32 16 22 C 0.07 2.35 4.51 86.30 0.39 2.74 16 23 C 0.04 1.05 2.92 31.10 0.09 1.14 16 24 H 0.09 1.97 5.62 -2.39 -0.01 1.96 16 25 C -0.14 -3.15 6.63 31.61 0.21 -2.94 16 26 C -0.15 -2.97 7.09 31.61 0.22 -2.74 16 27 C 0.03 0.78 7.63 72.48 0.55 1.33 16 28 O -0.39 -13.18 8.39 -148.98 -1.25 -14.43 16 29 H 0.28 14.67 8.31 -92.71 -0.77 13.90 16 30 H 0.39 21.15 7.90 -92.71 -0.73 20.42 16 31 H 0.09 3.43 7.91 -2.38 -0.02 3.41 16 32 H 0.09 3.32 5.10 -2.38 -0.01 3.31 16 33 H 0.08 2.07 7.77 -2.39 -0.02 2.06 16 34 H 0.06 1.32 5.49 -2.39 -0.01 1.31 16 35 H 0.14 1.99 7.82 -2.91 -0.02 1.97 16 36 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 37 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 38 H 0.13 2.53 8.06 -2.91 -0.02 2.50 16 39 H 0.40 7.03 9.06 -74.06 -0.67 6.36 16 40 H 0.06 2.70 5.79 -2.39 -0.01 2.69 16 41 H 0.09 2.79 7.09 -2.39 -0.02 2.77 16 42 H 0.06 1.53 7.87 -2.39 -0.02 1.51 16 43 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 47 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -79.43 378.04 -1.04 -80.47 By element: Atomic # 1 Polarization: 46.30 SS G_CDS: -0.39 Total: 45.91 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 5.16 Total: 1.88 kcal Atomic # 7 Polarization: -103.22 SS G_CDS: -5.35 Total: -108.57 kcal Atomic # 8 Polarization: -64.60 SS G_CDS: -2.48 Total: -67.08 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -79.43 -1.04 -80.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109761808.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.958 kcal (2) G-P(sol) polarization free energy of solvation -79.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.84 seconds