Wall clock time and date at job start Tue Mar 31 2020 23:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 120.00328 * 2 1 4 4 H 1.48504 * 109.46929 * 270.00156 * 3 2 1 5 5 H 1.48497 * 109.46746 * 29.99782 * 3 2 1 6 6 H 1.48500 * 109.47223 * 150.00104 * 3 2 1 7 7 C 1.39899 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99666 * 175.55717 * 7 2 1 9 9 C 1.41152 * 120.00563 * 355.55580 * 7 2 1 10 10 C 1.40867 * 120.16673 * 214.79014 * 9 7 2 11 11 C 1.36375 * 119.83104 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16567 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83174 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00217 * 35.29024 * 13 12 11 15 15 O 1.21581 * 119.99961 * 355.71679 * 14 13 12 16 16 N 1.34774 * 119.99783 * 175.71111 * 14 13 12 17 17 C 1.46506 * 119.99768 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47218 * 180.02562 * 17 16 14 19 19 O 1.42898 * 109.47230 * 64.99891 * 18 17 16 20 20 C 1.42896 * 113.99975 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47187 * 180.02562 * 20 19 18 22 22 H 1.09005 * 110.33354 * 52.74586 * 21 20 19 23 23 C 1.54477 * 110.37348 * 174.99824 * 21 20 19 24 24 C 1.54504 * 104.06669 * 142.80967 * 23 21 20 25 25 C 1.54487 * 104.06124 * 359.97438 * 24 23 21 26 26 O 1.44424 * 104.89913 * 335.96576 * 25 24 23 27 27 C 1.39477 * 120.33288 * 0.27665 * 12 11 10 28 28 C 1.36373 * 120.17120 * 359.44322 * 27 12 11 29 29 H 0.96999 * 119.99509 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.08438 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.91566 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99625 * 215.29869 * 13 12 11 33 33 H 0.96992 * 120.00554 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.46998 * 60.00324 * 17 16 14 35 35 H 1.08996 * 109.47100 * 299.99895 * 17 16 14 36 36 H 1.09005 * 109.46544 * 305.00263 * 18 17 16 37 37 H 1.08998 * 109.47269 * 185.00406 * 18 17 16 38 38 H 1.08999 * 109.47700 * 60.00006 * 20 19 18 39 39 H 1.09004 * 109.46724 * 299.99911 * 20 19 18 40 40 H 1.09001 * 110.51627 * 24.16039 * 23 21 20 41 41 H 1.09012 * 110.51107 * 261.45413 * 23 21 20 42 42 H 1.08993 * 110.51485 * 241.35794 * 24 23 21 43 43 H 1.09004 * 110.63172 * 118.69891 * 24 23 21 44 44 H 1.09004 * 110.37009 * 94.85578 * 25 24 23 45 45 H 1.08998 * 110.37136 * 217.08155 * 25 24 23 46 46 H 1.07998 * 119.91632 * 179.73034 * 27 12 11 47 47 H 1.08003 * 120.09299 * 180.27630 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0730 9 6 1.3057 -2.4322 0.0936 10 6 1.8649 -3.5186 0.7947 11 6 1.1803 -4.6950 0.8809 12 6 -0.0707 -4.8238 0.2776 13 7 -0.7637 -6.0279 0.3705 14 6 -0.6817 -6.7678 1.4940 15 8 0.0579 -6.4239 2.3957 16 7 -1.4195 -7.8888 1.6179 17 6 -1.3307 -8.6928 2.8395 18 6 -2.2617 -9.9014 2.7233 19 8 -1.8037 -10.7564 1.6739 20 6 -2.6081 -11.9214 1.4806 21 6 -2.0273 -12.7587 0.3393 22 1 -0.9700 -12.9573 0.5153 23 6 -2.8066 -14.0845 0.1943 24 6 -2.8579 -14.3251 -1.3310 25 6 -2.1040 -13.1157 -1.9273 26 8 -2.2114 -12.0806 -0.9259 27 6 -0.6285 -3.7543 -0.4227 28 6 0.0415 -2.5700 -0.5127 29 1 -0.4849 0.8401 -0.0004 30 1 2.8336 -3.4204 1.2620 31 1 1.6076 -5.5285 1.4184 32 1 -1.3055 -6.3342 -0.3735 33 1 -2.0093 -8.1633 0.8985 34 1 -1.6268 -8.0867 3.6957 35 1 -0.3052 -9.0363 2.9746 36 1 -3.2727 -9.5610 2.4995 37 1 -2.2633 -10.4506 3.6649 38 1 -3.6262 -11.6228 1.2308 39 1 -2.6172 -12.5127 2.3963 40 1 -3.8136 -13.9820 0.5988 41 1 -2.2752 -14.8963 0.6913 42 1 -3.8901 -14.3413 -1.6807 43 1 -2.3532 -15.2558 -1.5902 44 1 -1.0580 -13.3687 -2.1009 45 1 -2.5754 -12.7952 -2.8563 46 1 -1.5956 -3.8629 -0.8909 47 1 -0.3936 -1.7412 -1.0515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115751811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:04 Heat of formation + Delta-G solvation = -98.571522 kcal Electronic energy + Delta-G solvation = -27428.913799 eV Core-core repulsion = 23383.611594 eV Total energy + Delta-G solvation = -4045.302205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.08 seconds Orbital eigenvalues (eV) -39.94919 -39.74644 -38.14776 -37.26123 -34.72264 -34.12024 -32.80347 -32.57794 -31.23079 -29.59560 -29.30088 -28.26449 -25.67485 -24.78854 -22.82637 -22.40696 -21.50623 -21.32043 -20.76607 -19.97828 -17.90638 -17.42741 -17.16511 -16.85088 -16.65097 -16.24820 -16.08726 -15.46037 -15.12367 -14.90132 -14.54232 -14.23824 -14.14747 -13.84899 -13.61065 -13.17627 -12.81704 -12.63740 -12.53163 -12.32591 -12.22004 -12.00621 -11.67012 -11.64113 -11.58238 -11.44752 -11.24906 -11.09935 -11.07322 -10.90425 -10.63573 -10.13927 -10.03786 -9.95795 -9.43892 -9.35470 -9.13746 -8.82198 -8.72558 -7.43112 -6.72083 -6.51940 -4.23786 2.76165 3.10792 3.15042 3.16520 3.20714 3.21438 3.28574 3.46306 3.83343 4.05758 4.10036 4.31945 4.43162 4.61061 4.68873 4.75322 4.80665 4.85230 4.88270 4.95848 5.01102 5.05939 5.10657 5.22099 5.33100 5.39742 5.47721 5.54269 5.63993 5.74457 5.82236 6.30001 6.42702 6.54837 6.69791 6.84637 6.88304 6.96580 7.15613 7.26404 7.38571 7.53077 7.76105 7.98355 8.08542 8.20265 8.41707 8.60793 8.74221 9.03182 9.04258 9.22749 10.39332 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.001767 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.274449 B =15841.860245 C =16423.802333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.069 3.931 3 Si 0.914 3.086 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.462 4.462 8 H 0.074 0.926 9 C 0.096 3.904 10 C -0.203 4.203 11 C -0.088 4.088 12 C 0.027 3.973 13 N -0.668 5.668 14 C 0.696 3.304 15 O -0.581 6.581 16 N -0.747 5.747 17 C 0.145 3.855 18 C 0.050 3.950 19 O -0.376 6.376 20 C 0.068 3.932 21 C 0.075 3.925 22 H 0.078 0.922 23 C -0.148 4.148 24 C -0.155 4.155 25 C 0.041 3.959 26 O -0.361 6.361 27 C -0.125 4.125 28 C -0.140 4.140 29 H 0.276 0.724 30 H 0.095 0.905 31 H 0.109 0.891 32 H 0.392 0.608 33 H 0.396 0.604 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.065 0.935 38 H 0.058 0.942 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.060 0.940 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.935 -26.782 -0.192 28.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.145 4.145 3 Si 0.739 3.261 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.093 0.907 9 C 0.093 3.907 10 C -0.223 4.223 11 C -0.108 4.108 12 C -0.065 4.065 13 N -0.314 5.314 14 C 0.396 3.604 15 O -0.459 6.459 16 N -0.405 5.405 17 C 0.020 3.980 18 C -0.026 4.026 19 O -0.296 6.296 20 C -0.009 4.009 21 C 0.018 3.982 22 H 0.096 0.904 23 C -0.186 4.186 24 C -0.193 4.193 25 C -0.036 4.036 26 O -0.280 6.280 27 C -0.145 4.145 28 C -0.160 4.160 29 H 0.087 0.913 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.225 0.775 33 H 0.230 0.770 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.096 0.904 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.111 0.889 46 H 0.108 0.892 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.332 -26.036 0.539 27.663 hybrid contribution -0.554 0.115 -0.396 0.691 sum -9.886 -25.920 0.142 27.742 Atomic orbital electron populations 1.69773 1.07230 1.28485 1.38784 1.25856 0.94925 1.01043 0.92702 0.86217 0.80236 0.80661 0.78938 1.19624 1.20397 1.18793 1.19464 0.94645 0.90225 1.45002 0.90733 1.17714 0.92374 0.92035 0.88535 1.20808 1.01141 0.94934 1.05418 1.20441 0.92795 0.97946 0.99627 1.17093 0.93662 0.85018 1.10765 1.42111 1.51681 1.22133 1.15456 1.16005 0.81213 0.80054 0.83103 1.90898 1.42265 1.71773 1.40955 1.44996 1.48531 1.26268 1.20695 1.21112 1.00231 0.89210 0.87434 1.22821 0.97756 0.91196 0.90875 1.88014 1.52512 1.34351 1.54684 1.22541 0.94755 0.87174 0.96394 1.23054 0.99712 0.90536 0.84941 0.90360 1.22911 1.01604 0.97169 0.96947 1.22938 1.01988 0.99364 0.94992 1.23421 0.99827 0.87435 0.92904 1.89310 1.93321 1.30526 1.14810 1.20296 0.98406 0.93060 1.02763 1.21170 0.97293 0.95439 1.02100 0.91303 0.88677 0.87310 0.77495 0.77044 0.90176 0.90951 0.92516 0.91666 0.92370 0.91912 0.90393 0.90094 0.90544 0.90382 0.92148 0.88945 0.89176 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.85 10.59 55.55 0.59 -21.26 16 2 C 0.07 1.80 5.42 -17.34 -0.09 1.71 16 3 Si 0.91 19.59 29.56 -169.99 -5.03 14.57 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -0.46 -12.74 9.02 -37.86 -0.34 -13.08 16 8 H 0.07 1.97 7.85 -52.48 -0.41 1.56 16 9 C 0.10 2.67 5.55 -106.80 -0.59 2.07 16 10 C -0.20 -5.37 9.74 -39.26 -0.38 -5.75 16 11 C -0.09 -2.23 8.61 -39.79 -0.34 -2.57 16 12 C 0.03 0.64 6.31 -83.57 -0.53 0.12 16 13 N -0.67 -12.75 5.31 -14.10 -0.07 -12.83 16 14 C 0.70 13.35 8.39 -86.92 -0.73 12.62 16 15 O -0.58 -13.59 13.76 5.29 0.07 -13.52 16 16 N -0.75 -10.56 5.51 -65.22 -0.36 -10.92 16 17 C 0.14 1.73 6.06 -4.04 -0.02 1.70 16 18 C 0.05 0.43 6.07 37.16 0.23 0.66 16 19 O -0.38 -3.90 10.29 -35.27 -0.36 -4.27 16 20 C 0.07 0.51 5.54 37.16 0.21 0.72 16 21 C 0.08 0.59 3.58 -25.96 -0.09 0.50 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 23 C -0.15 -0.75 6.63 -25.17 -0.17 -0.92 16 24 C -0.16 -0.77 7.09 -25.16 -0.18 -0.94 16 25 C 0.04 0.29 7.62 37.94 0.29 0.58 16 26 O -0.36 -3.74 11.37 -35.27 -0.40 -4.14 16 27 C -0.12 -2.97 9.90 -39.79 -0.39 -3.37 16 28 C -0.14 -3.73 8.62 -39.26 -0.34 -4.07 16 29 H 0.28 6.78 8.30 -40.82 -0.34 6.44 16 30 H 0.10 2.39 8.06 -52.48 -0.42 1.97 16 31 H 0.11 2.76 6.22 -52.49 -0.33 2.43 16 32 H 0.39 6.02 8.83 -40.82 -0.36 5.66 16 33 H 0.40 4.71 8.49 -40.82 -0.35 4.36 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.34 7.87 -51.93 -0.41 -0.07 16 41 H 0.08 0.30 8.14 -51.92 -0.42 -0.12 16 42 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 47 H 0.13 3.59 6.13 -52.48 -0.32 3.27 16 LS Contribution 389.37 15.07 5.87 5.87 Total: -1.00 -34.02 389.37 -10.41 -44.43 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: -7.23 Total: 12.09 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -3.48 Total: -10.02 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.15 Total: -45.00 kcal Atomic # 8 Polarization: -21.23 SS G_CDS: -0.69 Total: -21.92 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.57 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.02 -10.41 -44.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115751811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.144 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.08 seconds