Wall clock time and date at job start Tue Mar 31 2020 23:50:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30879 * 1 3 3 Si 1.86800 * 120.00328 * 2 1 4 4 H 1.48504 * 109.46929 * 270.00156 * 3 2 1 5 5 H 1.48497 * 109.46746 * 29.99782 * 3 2 1 6 6 H 1.48500 * 109.47223 * 150.00104 * 3 2 1 7 7 C 1.39899 * 119.99590 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99666 * 175.55717 * 7 2 1 9 9 C 1.41152 * 120.00563 * 355.55580 * 7 2 1 10 10 C 1.40867 * 120.16673 * 214.79014 * 9 7 2 11 11 C 1.36375 * 119.83104 * 180.02562 * 10 9 7 12 12 C 1.39486 * 120.16567 * 359.97438 * 11 10 9 13 13 N 1.39240 * 119.83174 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00217 * 35.29024 * 13 12 11 15 15 O 1.21581 * 119.99961 * 355.71679 * 14 13 12 16 16 N 1.34774 * 119.99783 * 175.71111 * 14 13 12 17 17 C 1.46506 * 119.99768 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.47218 * 180.02562 * 17 16 14 19 19 O 1.42898 * 109.47230 * 64.99891 * 18 17 16 20 20 C 1.42896 * 113.99975 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47187 * 180.02562 * 20 19 18 22 22 H 1.09005 * 110.33354 * 52.74586 * 21 20 19 23 23 C 1.54477 * 110.37348 * 174.99824 * 21 20 19 24 24 C 1.54504 * 104.06669 * 142.80967 * 23 21 20 25 25 C 1.54487 * 104.06124 * 359.97438 * 24 23 21 26 26 O 1.44424 * 104.89913 * 335.96576 * 25 24 23 27 27 C 1.39477 * 120.33288 * 0.27665 * 12 11 10 28 28 C 1.36373 * 120.17120 * 359.44322 * 27 12 11 29 29 H 0.96999 * 119.99509 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.08438 * 359.97438 * 10 9 7 31 31 H 1.07994 * 119.91566 * 180.02562 * 11 10 9 32 32 H 0.96999 * 119.99625 * 215.29869 * 13 12 11 33 33 H 0.96992 * 120.00554 * 0.02562 * 16 14 13 34 34 H 1.09000 * 109.46998 * 60.00324 * 17 16 14 35 35 H 1.08996 * 109.47100 * 299.99895 * 17 16 14 36 36 H 1.09005 * 109.46544 * 305.00263 * 18 17 16 37 37 H 1.08998 * 109.47269 * 185.00406 * 18 17 16 38 38 H 1.08999 * 109.47700 * 60.00006 * 20 19 18 39 39 H 1.09004 * 109.46724 * 299.99911 * 20 19 18 40 40 H 1.09001 * 110.51627 * 24.16039 * 23 21 20 41 41 H 1.09012 * 110.51107 * 261.45413 * 23 21 20 42 42 H 1.08993 * 110.51485 * 241.35794 * 24 23 21 43 43 H 1.09004 * 110.63172 * 118.69891 * 24 23 21 44 44 H 1.09004 * 110.37009 * 94.85578 * 25 24 23 45 45 H 1.08998 * 110.37136 * 217.08155 * 25 24 23 46 46 H 1.07998 * 119.91632 * 179.73034 * 27 12 11 47 47 H 1.08003 * 120.09299 * 180.27630 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4904 2.0463 -1.4001 5 1 1.4403 2.6526 0.7000 6 1 3.5404 1.4401 0.7000 7 6 2.0082 -1.2116 -0.0005 8 1 3.0858 -1.2130 -0.0730 9 6 1.3057 -2.4322 0.0936 10 6 1.8649 -3.5186 0.7947 11 6 1.1803 -4.6950 0.8809 12 6 -0.0707 -4.8238 0.2776 13 7 -0.7637 -6.0279 0.3705 14 6 -0.6817 -6.7678 1.4940 15 8 0.0579 -6.4239 2.3957 16 7 -1.4195 -7.8888 1.6179 17 6 -1.3307 -8.6928 2.8395 18 6 -2.2617 -9.9014 2.7233 19 8 -1.8037 -10.7564 1.6739 20 6 -2.6081 -11.9214 1.4806 21 6 -2.0273 -12.7587 0.3393 22 1 -0.9700 -12.9573 0.5153 23 6 -2.8066 -14.0845 0.1943 24 6 -2.8579 -14.3251 -1.3310 25 6 -2.1040 -13.1157 -1.9273 26 8 -2.2114 -12.0806 -0.9259 27 6 -0.6285 -3.7543 -0.4227 28 6 0.0415 -2.5700 -0.5127 29 1 -0.4849 0.8401 -0.0004 30 1 2.8336 -3.4204 1.2620 31 1 1.6076 -5.5285 1.4184 32 1 -1.3055 -6.3342 -0.3735 33 1 -2.0093 -8.1633 0.8985 34 1 -1.6268 -8.0867 3.6957 35 1 -0.3052 -9.0363 2.9746 36 1 -3.2727 -9.5610 2.4995 37 1 -2.2633 -10.4506 3.6649 38 1 -3.6262 -11.6228 1.2308 39 1 -2.6172 -12.5127 2.3963 40 1 -3.8136 -13.9820 0.5988 41 1 -2.2752 -14.8963 0.6913 42 1 -3.8901 -14.3413 -1.6807 43 1 -2.3532 -15.2558 -1.5902 44 1 -1.0580 -13.3687 -2.1009 45 1 -2.5754 -12.7952 -2.8563 46 1 -1.5956 -3.8629 -0.8909 47 1 -0.3936 -1.7412 -1.0515 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115751811.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:54 Heat of formation + Delta-G solvation = -122.065620 kcal Electronic energy + Delta-G solvation = -27429.932579 eV Core-core repulsion = 23383.611594 eV Total energy + Delta-G solvation = -4046.320986 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 12.46 seconds Orbital eigenvalues (eV) -41.39297 -40.43945 -39.35222 -38.66589 -36.27131 -35.65494 -34.64884 -33.10212 -31.94957 -31.45255 -30.84162 -29.65777 -26.73487 -26.13540 -23.97599 -23.15861 -22.90602 -22.55540 -21.86039 -21.66457 -19.47756 -19.10811 -18.30023 -17.99981 -17.43107 -17.08622 -16.85313 -16.77268 -16.45792 -16.25031 -15.74498 -15.52830 -15.45716 -14.93321 -14.60723 -14.50055 -14.42539 -14.08178 -13.92173 -13.55253 -13.26350 -13.14680 -12.97751 -12.83259 -12.75620 -12.65622 -12.46166 -12.20812 -12.13535 -12.10084 -11.81710 -11.48262 -11.38464 -11.22759 -11.01339 -10.74119 -10.65475 -10.59456 -10.06784 -9.44270 -8.66768 -8.47392 -6.29823 0.86579 1.16544 1.40621 1.48400 1.55604 1.80899 2.21598 2.26814 2.57318 2.83764 2.96222 3.40569 3.66651 3.70944 3.80279 3.98679 4.01603 4.17379 4.22941 4.27656 4.41346 4.42110 4.50156 4.53112 4.55826 4.59368 4.68289 4.81614 4.85582 4.91933 4.95472 4.96073 5.09795 5.15538 5.16960 5.17110 5.35325 5.46177 5.50604 5.71507 5.83997 5.89721 6.05812 6.13909 6.23115 6.27687 6.42162 6.70702 6.99403 7.03593 7.15961 7.66786 8.45469 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025419 B = 0.001767 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.274449 B =15841.860245 C =16423.802333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.027 3.973 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.263 1.263 7 C -0.498 4.498 8 H 0.072 0.928 9 C 0.064 3.936 10 C -0.218 4.218 11 C -0.100 4.100 12 C 0.042 3.958 13 N -0.661 5.661 14 C 0.692 3.308 15 O -0.626 6.626 16 N -0.726 5.726 17 C 0.139 3.861 18 C 0.059 3.941 19 O -0.406 6.406 20 C 0.065 3.935 21 C 0.066 3.934 22 H 0.067 0.933 23 C -0.142 4.142 24 C -0.151 4.151 25 C 0.031 3.969 26 O -0.396 6.396 27 C -0.121 4.121 28 C -0.156 4.156 29 H 0.284 0.716 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.413 0.587 33 H 0.410 0.590 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.124 0.876 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.644 -28.275 -0.099 30.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.185 4.185 3 Si 0.810 3.190 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.238 4.238 11 C -0.120 4.120 12 C -0.052 4.052 13 N -0.308 5.308 14 C 0.393 3.607 15 O -0.506 6.506 16 N -0.383 5.383 17 C 0.015 3.985 18 C -0.017 4.017 19 O -0.326 6.326 20 C -0.011 4.011 21 C 0.009 3.991 22 H 0.085 0.915 23 C -0.180 4.180 24 C -0.188 4.188 25 C -0.045 4.045 26 O -0.316 6.316 27 C -0.141 4.141 28 C -0.177 4.177 29 H 0.095 0.905 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.250 0.750 33 H 0.246 0.754 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.111 0.889 38 H 0.081 0.919 39 H 0.106 0.894 40 H 0.106 0.894 41 H 0.115 0.885 42 H 0.101 0.899 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.114 0.886 46 H 0.142 0.858 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.098 -27.611 0.604 29.764 hybrid contribution -0.082 0.398 -0.418 0.583 sum -11.180 -27.213 0.185 29.421 Atomic orbital electron populations 1.69833 1.08563 1.29880 1.38821 1.26743 0.95834 1.04289 0.91617 0.85094 0.78634 0.75794 0.79453 1.18387 1.19379 1.18746 1.19699 0.94791 0.91316 1.47133 0.90997 1.18039 0.93464 0.92718 0.89611 1.20919 1.01543 0.95420 1.05917 1.20529 0.93793 0.97489 1.00186 1.17119 0.92981 0.86398 1.08748 1.41909 1.51518 1.20885 1.16529 1.16205 0.81196 0.80926 0.82420 1.90873 1.44250 1.73106 1.42413 1.44887 1.47071 1.24486 1.21839 1.21317 1.00456 0.90340 0.86392 1.22788 0.97079 0.89890 0.91951 1.87970 1.53715 1.35538 1.55338 1.22723 0.94426 0.86554 0.97364 1.23229 0.99695 0.91859 0.84333 0.91492 1.22912 1.01912 0.96013 0.97144 1.22940 1.02180 0.98917 0.94811 1.23594 1.00285 0.87872 0.92757 1.89262 1.93491 1.32514 1.16300 1.20529 0.99372 0.91984 1.02244 1.21164 0.97445 0.96318 1.02727 0.90525 0.88643 0.87646 0.75048 0.75384 0.89985 0.92605 0.90940 0.88863 0.91894 0.89385 0.89380 0.88532 0.89941 0.88925 0.92249 0.88577 0.85774 0.86175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.72 10.59 21.82 0.23 -45.49 16 2 C 0.03 1.41 5.42 85.24 0.46 1.87 16 3 Si 0.99 40.30 29.56 68.60 2.03 42.33 16 4 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 5 H -0.27 -10.46 7.11 99.48 0.71 -9.75 16 6 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 7 C -0.50 -28.34 9.02 23.39 0.21 -28.13 16 8 H 0.07 3.95 7.85 -2.91 -0.02 3.93 16 9 C 0.06 3.68 5.55 -21.27 -0.12 3.56 16 10 C -0.22 -11.96 9.74 22.48 0.22 -11.74 16 11 C -0.10 -5.15 8.61 22.14 0.19 -4.96 16 12 C 0.04 1.95 6.31 38.56 0.24 2.19 16 13 N -0.66 -24.37 5.31 -316.79 -1.68 -26.06 16 14 C 0.69 26.02 8.39 179.06 1.50 27.52 16 15 O -0.63 -29.42 13.76 -3.97 -0.05 -29.47 16 16 N -0.73 -19.44 5.51 -478.53 -2.64 -22.08 16 17 C 0.14 3.13 6.06 86.38 0.52 3.65 16 18 C 0.06 0.86 6.07 71.98 0.44 1.30 16 19 O -0.41 -7.65 10.29 -148.95 -1.53 -9.18 16 20 C 0.07 0.84 5.54 71.98 0.40 1.24 16 21 C 0.07 0.95 3.58 31.10 0.11 1.06 16 22 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 23 C -0.14 -1.11 6.63 31.61 0.21 -0.90 16 24 C -0.15 -1.20 7.09 31.61 0.22 -0.97 16 25 C 0.03 0.42 7.62 72.49 0.55 0.97 16 26 O -0.40 -7.95 11.37 -148.95 -1.69 -9.64 16 27 C -0.12 -5.69 9.90 22.13 0.22 -5.47 16 28 C -0.16 -8.48 8.62 22.48 0.19 -8.29 16 29 H 0.28 13.98 8.30 -92.71 -0.77 13.21 16 30 H 0.10 5.04 8.06 -2.91 -0.02 5.01 16 31 H 0.11 5.49 6.22 -2.91 -0.02 5.47 16 32 H 0.41 11.75 8.83 -92.71 -0.82 10.93 16 33 H 0.41 8.86 8.49 -92.71 -0.79 8.07 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.09 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.09 0.52 7.87 -2.39 -0.02 0.50 16 41 H 0.10 0.45 8.14 -2.38 -0.02 0.43 16 42 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 45 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.12 4.92 8.06 -2.91 -0.02 4.89 16 47 H 0.12 6.73 6.13 -2.91 -0.02 6.71 16 Total: -1.00 -75.96 389.37 -0.37 -76.33 By element: Atomic # 1 Polarization: 40.96 SS G_CDS: -0.61 Total: 40.35 kcal Atomic # 6 Polarization: -22.67 SS G_CDS: 5.58 Total: -17.09 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.09 Total: -93.62 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -3.28 Total: -48.30 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -75.96 -0.37 -76.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115751811.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.736 kcal (2) G-P(sol) polarization free energy of solvation -75.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.46 seconds