Wall clock time and date at job start Tue Mar 31 2020 23:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86806 * 119.99523 * 2 1 4 4 H 1.48497 * 109.47077 * 274.72547 * 3 2 1 5 5 H 1.48500 * 109.47084 * 34.72633 * 3 2 1 6 6 H 1.48504 * 109.46999 * 154.72555 * 3 2 1 7 7 C 1.39890 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 161.27352 * 7 2 1 9 9 C 1.41155 * 119.99844 * 341.54955 * 7 2 1 10 10 C 1.40865 * 120.16552 * 335.53471 * 9 7 2 11 11 C 1.36376 * 119.83276 * 179.71849 * 10 9 7 12 12 C 1.39481 * 120.16148 * 0.57986 * 11 10 9 13 13 N 1.39245 * 119.83179 * 179.71705 * 12 11 10 14 14 C 1.34777 * 120.00069 * 33.25244 * 13 12 11 15 15 O 1.21578 * 119.99785 * 5.42571 * 14 13 12 16 16 N 1.34774 * 120.00074 * 185.41722 * 14 13 12 17 17 C 1.46500 * 120.00104 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47145 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47081 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47020 * 180.02562 * 19 18 17 21 21 C 1.42901 * 113.99976 * 179.97438 * 20 19 18 22 22 H 1.08996 * 110.45776 * 330.69932 * 21 20 19 23 23 C 1.54508 * 110.51220 * 208.09108 * 21 20 19 24 24 C 1.54469 * 104.06587 * 241.35493 * 23 21 20 25 25 O 1.44419 * 104.80557 * 23.98216 * 24 23 21 26 26 C 1.44783 * 105.29346 * 319.45275 * 25 24 23 27 27 C 1.39478 * 120.33788 * 359.69533 * 12 11 10 28 28 C 1.36374 * 120.16811 * 359.97438 * 27 12 11 29 29 H 0.96995 * 120.00459 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.08494 * 0.02562 * 10 9 7 31 31 H 1.07991 * 119.91897 * 180.29652 * 11 10 9 32 32 H 0.96999 * 119.99835 * 213.26079 * 13 12 11 33 33 H 0.97008 * 119.99763 * 0.02562 * 16 14 13 34 34 H 1.08993 * 109.47370 * 300.00450 * 17 16 14 35 35 H 1.09002 * 109.46712 * 60.01065 * 17 16 14 36 36 H 1.08998 * 109.47597 * 300.00579 * 18 17 16 37 37 H 1.08999 * 109.47242 * 60.00404 * 18 17 16 38 38 H 1.09001 * 109.46828 * 299.99782 * 19 18 17 39 39 H 1.08994 * 109.47114 * 60.00374 * 19 18 17 40 40 H 1.08999 * 110.51105 * 0.02562 * 23 21 20 41 41 H 1.09003 * 110.50774 * 122.70911 * 23 21 20 42 42 H 1.09001 * 110.37621 * 142.81138 * 24 23 21 43 43 H 1.09000 * 110.37694 * 265.14621 * 24 23 21 44 44 H 1.09003 * 110.42939 * 281.77455 * 26 25 24 45 45 H 1.09009 * 110.49135 * 159.32462 * 26 25 24 46 46 H 1.07999 * 119.91981 * 180.02562 * 27 12 11 47 47 H 1.07998 * 120.08682 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.3903 2.1042 -1.3953 5 1 1.4936 2.6218 0.7976 6 1 3.5867 1.4136 0.5978 7 6 2.0084 -1.2114 -0.0005 8 1 3.0455 -1.2360 -0.3008 9 6 1.3571 -2.4026 0.3858 10 6 0.2333 -2.3520 1.2337 11 6 -0.3942 -3.5067 1.5981 12 6 0.0814 -4.7365 1.1431 13 7 -0.5611 -5.9116 1.5242 14 6 -1.8950 -5.9184 1.7164 15 8 -2.5509 -4.9267 1.4624 16 7 -2.5020 -7.0247 2.1900 17 6 -3.9519 -7.0320 2.3995 18 6 -4.3823 -8.3973 2.9393 19 6 -5.8967 -8.4051 3.1575 20 8 -6.2986 -9.6802 3.6622 21 6 -7.7027 -9.7938 3.9024 22 1 -8.1257 -8.8219 4.1562 23 6 -7.9783 -10.8150 5.0287 24 6 -8.8255 -11.9100 4.3436 25 8 -8.4948 -11.8091 2.9414 26 6 -8.4165 -10.3894 2.6687 27 6 1.1970 -4.7951 0.3080 28 6 1.8309 -3.6484 -0.0703 29 1 -0.4850 0.8400 0.0004 30 1 -0.1334 -1.4008 1.5904 31 1 -1.2587 -3.4692 2.2442 32 1 -0.0485 -6.7252 1.6514 33 1 -1.9786 -7.8159 2.3929 34 1 -4.2191 -6.2570 3.1178 35 1 -4.4567 -6.8397 1.4528 36 1 -4.1150 -9.1727 2.2213 37 1 -3.8775 -8.5893 3.8861 38 1 -6.1643 -7.6298 3.8754 39 1 -6.4012 -8.2134 2.2105 40 1 -7.0436 -11.2329 5.4025 41 1 -8.5396 -10.3485 5.8383 42 1 -8.5558 -12.8940 4.7271 43 1 -9.8877 -11.7199 4.4976 44 1 -9.4157 -9.9658 2.5672 45 1 -7.8323 -10.2057 1.7669 46 1 1.5593 -5.7509 -0.0407 47 1 2.6943 -3.6953 -0.7173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119030243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:32 Heat of formation + Delta-G solvation = -101.031712 kcal Electronic energy + Delta-G solvation = -26928.446474 eV Core-core repulsion = 22883.037587 eV Total energy + Delta-G solvation = -4045.408887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.10757 -39.83654 -37.82707 -37.36489 -35.39422 -34.30789 -33.00645 -32.29383 -31.14809 -29.43475 -29.14516 -28.77220 -25.89641 -24.50145 -23.30931 -22.11014 -21.59237 -21.38272 -21.03376 -19.87842 -17.86357 -17.72066 -17.26501 -16.92273 -16.67323 -16.37820 -15.98710 -15.53475 -15.28038 -14.95414 -14.76880 -14.09294 -13.98369 -13.89130 -13.82850 -13.23870 -12.94762 -12.67057 -12.62562 -12.29898 -12.06502 -12.00693 -11.90020 -11.77972 -11.70844 -11.50173 -11.30991 -11.22531 -11.08091 -10.91065 -10.47863 -10.47377 -9.98269 -9.83678 -9.82462 -9.49972 -9.22222 -8.88924 -8.64907 -7.47000 -6.94241 -6.69298 -4.23152 2.70362 2.85278 3.09982 3.10491 3.14766 3.19041 3.34210 3.46698 3.76540 3.96881 4.03787 4.32178 4.48950 4.57649 4.59665 4.61608 4.69617 4.73421 4.81671 4.97381 4.97593 5.14468 5.16950 5.23244 5.24179 5.36085 5.44081 5.52360 5.75493 5.83997 5.86720 6.19522 6.22607 6.42333 6.59453 6.79072 6.85692 6.87703 7.09827 7.15744 7.34445 7.39994 7.66626 7.90386 8.05435 8.10698 8.31584 8.54152 8.68188 8.93634 8.97811 9.16958 10.23254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032527 B = 0.001502 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.617181 B =18635.520738 C =19161.759108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.075 3.925 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.260 1.260 7 C -0.461 4.461 8 H 0.078 0.922 9 C 0.104 3.896 10 C -0.156 4.156 11 C -0.086 4.086 12 C 0.013 3.987 13 N -0.667 5.667 14 C 0.693 3.307 15 O -0.575 6.575 16 N -0.753 5.753 17 C 0.144 3.856 18 C -0.129 4.129 19 C 0.063 3.937 20 O -0.372 6.372 21 C 0.056 3.944 22 H 0.079 0.921 23 C -0.155 4.155 24 C 0.044 3.956 25 O -0.370 6.370 26 C 0.022 3.978 27 C -0.107 4.107 28 C -0.216 4.216 29 H 0.281 0.719 30 H 0.119 0.881 31 H 0.102 0.898 32 H 0.390 0.610 33 H 0.393 0.607 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.094 0.906 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.797 -18.911 9.656 25.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.143 4.143 3 Si 0.730 3.270 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.184 1.184 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.101 3.899 10 C -0.176 4.176 11 C -0.106 4.106 12 C -0.080 4.080 13 N -0.313 5.313 14 C 0.394 3.606 15 O -0.451 6.451 16 N -0.411 5.411 17 C 0.019 3.981 18 C -0.167 4.167 19 C -0.014 4.014 20 O -0.291 6.291 21 C -0.003 4.003 22 H 0.097 0.903 23 C -0.192 4.192 24 C -0.033 4.033 25 O -0.289 6.289 26 C -0.055 4.055 27 C -0.127 4.127 28 C -0.236 4.236 29 H 0.092 0.908 30 H 0.137 0.863 31 H 0.120 0.880 32 H 0.223 0.777 33 H 0.226 0.774 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.117 0.883 46 H 0.107 0.893 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.479 -18.139 9.304 25.596 hybrid contribution 0.519 0.351 0.135 0.641 sum -14.959 -17.788 9.439 25.085 Atomic orbital electron populations 1.69876 1.07572 1.29228 1.34659 1.25929 0.94680 1.01327 0.92371 0.86342 0.80770 0.80849 0.79000 1.19629 1.20068 1.18424 1.19521 0.98389 0.91398 1.39706 0.90435 1.17652 0.91218 0.92047 0.88940 1.20968 0.99065 0.96733 1.00803 1.20440 0.98816 0.91521 0.99846 1.16981 0.99122 0.84366 1.07526 1.42102 1.05184 1.12316 1.71701 1.15997 0.82263 0.83311 0.79079 1.90946 1.64000 1.33167 1.57008 1.45032 1.08180 1.15453 1.72428 1.20910 0.80149 0.95951 1.01072 1.21665 0.94494 0.97671 1.02864 1.22447 0.95333 0.85208 0.98441 1.87971 1.22059 1.33841 1.85264 1.23510 0.82721 0.99290 0.94756 0.90310 1.23084 1.02023 0.96426 0.97700 1.23425 0.98175 0.99886 0.81767 1.89229 1.91466 1.22996 1.25210 1.24059 0.99998 0.82210 0.99201 1.20008 0.97239 0.97185 0.98293 1.20518 1.03980 0.92401 1.06679 0.90843 0.86343 0.87970 0.77685 0.77406 0.91580 0.91567 0.90341 0.90375 0.92627 0.92717 0.89056 0.89529 0.88737 0.92108 0.91346 0.88325 0.89290 0.88683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -21.10 10.98 55.54 0.61 -20.49 16 2 C 0.08 1.92 5.12 -17.34 -0.09 1.84 16 3 Si 0.91 18.89 29.60 -169.99 -5.03 13.85 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 6 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 7 C -0.46 -12.38 9.03 -37.86 -0.34 -12.72 16 8 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 9 C 0.10 2.84 5.57 -106.80 -0.60 2.24 16 10 C -0.16 -4.25 8.64 -39.26 -0.34 -4.59 16 11 C -0.09 -2.20 8.57 -39.79 -0.34 -2.54 16 12 C 0.01 0.29 6.29 -83.57 -0.53 -0.24 16 13 N -0.67 -12.07 5.32 -14.10 -0.07 -12.14 16 14 C 0.69 12.74 8.29 -86.92 -0.72 12.02 16 15 O -0.57 -13.39 13.99 5.30 0.07 -13.31 16 16 N -0.75 -9.58 5.56 -65.23 -0.36 -9.94 16 17 C 0.14 1.59 5.67 -4.04 -0.02 1.56 16 18 C -0.13 -1.04 5.70 -26.73 -0.15 -1.19 16 19 C 0.06 0.48 5.79 37.16 0.22 0.69 16 20 O -0.37 -3.30 9.98 -35.23 -0.35 -3.66 16 21 C 0.06 0.38 3.59 -25.16 -0.09 0.29 16 22 H 0.08 0.41 7.84 -51.93 -0.41 0.00 16 23 C -0.15 -0.88 6.90 -25.17 -0.17 -1.05 16 24 C 0.04 0.27 7.63 37.93 0.29 0.56 16 25 O -0.37 -3.47 11.66 -35.23 -0.41 -3.89 16 26 C 0.02 0.16 7.40 37.93 0.28 0.44 16 27 C -0.11 -2.39 9.89 -39.79 -0.39 -2.78 16 28 C -0.22 -5.31 9.74 -39.26 -0.38 -5.70 16 29 H 0.28 6.83 8.30 -40.82 -0.34 6.49 16 30 H 0.12 3.34 6.17 -52.48 -0.32 3.02 16 31 H 0.10 2.63 6.38 -52.49 -0.34 2.30 16 32 H 0.39 5.40 8.83 -40.82 -0.36 5.04 16 33 H 0.39 3.68 8.49 -40.82 -0.35 3.34 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.59 8.00 -51.93 -0.42 0.18 16 41 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.73 8.09 -51.92 -0.42 0.31 16 46 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 47 H 0.09 2.18 8.06 -52.49 -0.42 1.75 16 LS Contribution 389.75 15.07 5.87 5.87 Total: -1.00 -33.90 389.75 -10.29 -44.18 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -7.23 Total: 10.69 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.38 Total: -11.17 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.17 Total: -42.57 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.69 Total: -20.85 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.90 -10.29 -44.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119030243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.850 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds