Wall clock time and date at job start Tue Mar 31 2020 23:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30881 * 1 3 3 Si 1.86806 * 119.99523 * 2 1 4 4 H 1.48497 * 109.47077 * 274.72547 * 3 2 1 5 5 H 1.48500 * 109.47084 * 34.72633 * 3 2 1 6 6 H 1.48504 * 109.46999 * 154.72555 * 3 2 1 7 7 C 1.39890 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00153 * 161.27352 * 7 2 1 9 9 C 1.41155 * 119.99844 * 341.54955 * 7 2 1 10 10 C 1.40865 * 120.16552 * 335.53471 * 9 7 2 11 11 C 1.36376 * 119.83276 * 179.71849 * 10 9 7 12 12 C 1.39481 * 120.16148 * 0.57986 * 11 10 9 13 13 N 1.39245 * 119.83179 * 179.71705 * 12 11 10 14 14 C 1.34777 * 120.00069 * 33.25244 * 13 12 11 15 15 O 1.21578 * 119.99785 * 5.42571 * 14 13 12 16 16 N 1.34774 * 120.00074 * 185.41722 * 14 13 12 17 17 C 1.46500 * 120.00104 * 179.97438 * 16 14 13 18 18 C 1.52998 * 109.47145 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.47081 * 180.02562 * 18 17 16 20 20 O 1.42898 * 109.47020 * 180.02562 * 19 18 17 21 21 C 1.42901 * 113.99976 * 179.97438 * 20 19 18 22 22 H 1.08996 * 110.45776 * 330.69932 * 21 20 19 23 23 C 1.54508 * 110.51220 * 208.09108 * 21 20 19 24 24 C 1.54469 * 104.06587 * 241.35493 * 23 21 20 25 25 O 1.44419 * 104.80557 * 23.98216 * 24 23 21 26 26 C 1.44783 * 105.29346 * 319.45275 * 25 24 23 27 27 C 1.39478 * 120.33788 * 359.69533 * 12 11 10 28 28 C 1.36374 * 120.16811 * 359.97438 * 27 12 11 29 29 H 0.96995 * 120.00459 * 359.97438 * 1 2 3 30 30 H 1.08007 * 120.08494 * 0.02562 * 10 9 7 31 31 H 1.07991 * 119.91897 * 180.29652 * 11 10 9 32 32 H 0.96999 * 119.99835 * 213.26079 * 13 12 11 33 33 H 0.97008 * 119.99763 * 0.02562 * 16 14 13 34 34 H 1.08993 * 109.47370 * 300.00450 * 17 16 14 35 35 H 1.09002 * 109.46712 * 60.01065 * 17 16 14 36 36 H 1.08998 * 109.47597 * 300.00579 * 18 17 16 37 37 H 1.08999 * 109.47242 * 60.00404 * 18 17 16 38 38 H 1.09001 * 109.46828 * 299.99782 * 19 18 17 39 39 H 1.08994 * 109.47114 * 60.00374 * 19 18 17 40 40 H 1.08999 * 110.51105 * 0.02562 * 23 21 20 41 41 H 1.09003 * 110.50774 * 122.70911 * 23 21 20 42 42 H 1.09001 * 110.37621 * 142.81138 * 24 23 21 43 43 H 1.09000 * 110.37694 * 265.14621 * 24 23 21 44 44 H 1.09003 * 110.42939 * 281.77455 * 26 25 24 45 45 H 1.09009 * 110.49135 * 159.32462 * 26 25 24 46 46 H 1.07999 * 119.91981 * 180.02562 * 27 12 11 47 47 H 1.07998 * 120.08682 * 180.02562 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6179 0.0000 4 1 2.3903 2.1042 -1.3953 5 1 1.4936 2.6218 0.7976 6 1 3.5867 1.4136 0.5978 7 6 2.0084 -1.2114 -0.0005 8 1 3.0455 -1.2360 -0.3008 9 6 1.3571 -2.4026 0.3858 10 6 0.2333 -2.3520 1.2337 11 6 -0.3942 -3.5067 1.5981 12 6 0.0814 -4.7365 1.1431 13 7 -0.5611 -5.9116 1.5242 14 6 -1.8950 -5.9184 1.7164 15 8 -2.5509 -4.9267 1.4624 16 7 -2.5020 -7.0247 2.1900 17 6 -3.9519 -7.0320 2.3995 18 6 -4.3823 -8.3973 2.9393 19 6 -5.8967 -8.4051 3.1575 20 8 -6.2986 -9.6802 3.6622 21 6 -7.7027 -9.7938 3.9024 22 1 -8.1257 -8.8219 4.1562 23 6 -7.9783 -10.8150 5.0287 24 6 -8.8255 -11.9100 4.3436 25 8 -8.4948 -11.8091 2.9414 26 6 -8.4165 -10.3894 2.6687 27 6 1.1970 -4.7951 0.3080 28 6 1.8309 -3.6484 -0.0703 29 1 -0.4850 0.8400 0.0004 30 1 -0.1334 -1.4008 1.5904 31 1 -1.2587 -3.4692 2.2442 32 1 -0.0485 -6.7252 1.6514 33 1 -1.9786 -7.8159 2.3929 34 1 -4.2191 -6.2570 3.1178 35 1 -4.4567 -6.8397 1.4528 36 1 -4.1150 -9.1727 2.2213 37 1 -3.8775 -8.5893 3.8861 38 1 -6.1643 -7.6298 3.8754 39 1 -6.4012 -8.2134 2.2105 40 1 -7.0436 -11.2329 5.4025 41 1 -8.5396 -10.3485 5.8383 42 1 -8.5558 -12.8940 4.7271 43 1 -9.8877 -11.7199 4.4976 44 1 -9.4157 -9.9658 2.5672 45 1 -7.8323 -10.2057 1.7669 46 1 1.5593 -5.7509 -0.0407 47 1 2.6943 -3.6953 -0.7173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119030243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:45:29 Heat of formation + Delta-G solvation = -124.774518 kcal Electronic energy + Delta-G solvation = -26929.476040 eV Core-core repulsion = 22883.037587 eV Total energy + Delta-G solvation = -4046.438452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.38611 -40.61370 -39.28551 -38.32651 -36.61211 -35.99591 -34.75021 -33.15475 -31.90459 -31.36570 -30.63405 -29.58329 -27.20105 -25.94543 -23.84871 -23.28556 -22.91727 -22.69383 -22.03741 -21.48525 -19.35968 -19.15959 -18.42712 -18.02068 -17.45020 -17.23684 -16.98463 -16.73488 -16.28801 -16.17016 -15.79305 -15.72345 -15.38453 -14.96646 -14.71277 -14.65427 -14.41676 -13.92376 -13.77100 -13.66065 -13.35450 -13.23170 -12.95631 -12.77191 -12.68761 -12.56768 -12.55101 -12.29887 -12.26085 -12.03316 -11.76842 -11.71282 -11.69229 -11.27084 -11.04294 -11.01399 -10.51131 -10.37748 -10.10048 -9.42818 -8.81812 -8.58751 -6.22962 0.88810 1.16785 1.39086 1.47348 1.55691 1.72924 2.19747 2.23839 2.59096 2.79711 2.99107 3.43091 3.57194 3.77391 3.83559 3.97034 3.98138 4.05618 4.13315 4.22275 4.44013 4.45789 4.46171 4.49493 4.50082 4.57992 4.66305 4.73707 4.80407 4.90390 4.98110 5.03799 5.09744 5.09920 5.13312 5.20705 5.31953 5.45912 5.48498 5.68757 5.73568 5.80732 6.11404 6.14541 6.23238 6.24685 6.38734 6.70982 6.95367 7.04618 7.18669 7.68691 8.35559 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.032527 B = 0.001502 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.617181 B =18635.520738 C =19161.759108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.031 3.969 3 Si 0.984 3.016 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.496 4.496 8 H 0.082 0.918 9 C 0.071 3.929 10 C -0.180 4.180 11 C -0.100 4.100 12 C 0.026 3.974 13 N -0.657 5.657 14 C 0.690 3.310 15 O -0.627 6.627 16 N -0.729 5.729 17 C 0.144 3.856 18 C -0.114 4.114 19 C 0.061 3.939 20 O -0.391 6.391 21 C 0.049 3.951 22 H 0.097 0.903 23 C -0.152 4.152 24 C 0.039 3.961 25 O -0.404 6.404 26 C 0.018 3.982 27 C -0.101 4.101 28 C -0.223 4.223 29 H 0.286 0.714 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.415 0.585 33 H 0.414 0.586 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.134 0.866 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.645 -20.533 10.163 27.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.184 4.184 3 Si 0.804 3.196 4 H -0.186 1.186 5 H -0.194 1.194 6 H -0.178 1.178 7 C -0.525 4.525 8 H 0.100 0.900 9 C 0.068 3.932 10 C -0.200 4.200 11 C -0.121 4.121 12 C -0.068 4.068 13 N -0.306 5.306 14 C 0.390 3.610 15 O -0.508 6.508 16 N -0.386 5.386 17 C 0.019 3.981 18 C -0.152 4.152 19 C -0.016 4.016 20 O -0.310 6.310 21 C -0.009 4.009 22 H 0.115 0.885 23 C -0.189 4.189 24 C -0.037 4.037 25 O -0.323 6.323 26 C -0.058 4.058 27 C -0.121 4.121 28 C -0.243 4.243 29 H 0.097 0.903 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.252 0.748 33 H 0.250 0.750 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.127 0.873 42 H 0.118 0.882 43 H 0.096 0.904 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.152 0.848 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.322 -19.866 9.839 26.948 hybrid contribution 0.360 0.648 0.014 0.741 sum -14.962 -19.218 9.853 26.273 Atomic orbital electron populations 1.69956 1.09323 1.30494 1.35757 1.26859 0.95373 1.04897 0.91238 0.85174 0.79250 0.75777 0.79368 1.18639 1.19424 1.17782 1.19814 0.98823 0.92472 1.41384 0.89990 1.18001 0.91786 0.93634 0.89743 1.20859 1.00325 0.96488 1.02335 1.20466 0.98666 0.92574 1.00380 1.17032 0.98767 0.84983 1.06003 1.41857 1.05406 1.11862 1.71436 1.16215 0.82086 0.83834 0.78828 1.90925 1.65115 1.35586 1.59148 1.44821 1.09026 1.14468 1.70317 1.21004 0.78777 0.97672 1.00625 1.21502 0.95049 0.95566 1.03087 1.22459 0.94887 0.85212 0.99009 1.87935 1.23395 1.34286 1.85409 1.23708 0.81781 1.00473 0.94924 0.88477 1.23110 1.01786 0.96131 0.97909 1.23620 0.99280 1.00461 0.80356 1.89185 1.91819 1.24250 1.27078 1.24171 1.00981 0.81562 0.99136 1.20367 0.96276 0.98437 0.97037 1.20810 1.04521 0.92298 1.06663 0.90305 0.88668 0.89065 0.74758 0.74964 0.92403 0.92457 0.89840 0.89617 0.91805 0.92240 0.90120 0.87290 0.88194 0.90387 0.89552 0.89177 0.84792 0.87123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.18 10.98 21.82 0.24 -45.94 16 2 C 0.03 1.61 5.12 85.23 0.44 2.05 16 3 Si 0.98 39.30 29.60 68.60 2.03 41.33 16 4 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 6 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 7 C -0.50 -27.35 9.03 23.39 0.21 -27.13 16 8 H 0.08 4.27 7.91 -2.91 -0.02 4.24 16 9 C 0.07 3.97 5.57 -21.27 -0.12 3.85 16 10 C -0.18 -10.27 8.64 22.48 0.19 -10.07 16 11 C -0.10 -5.27 8.57 22.13 0.19 -5.08 16 12 C 0.03 1.17 6.29 38.56 0.24 1.42 16 13 N -0.66 -22.42 5.32 -316.79 -1.68 -24.11 16 14 C 0.69 24.58 8.29 179.06 1.48 26.06 16 15 O -0.63 -29.54 13.99 -3.96 -0.06 -29.59 16 16 N -0.73 -17.05 5.56 -478.55 -2.66 -19.71 16 17 C 0.14 2.97 5.67 86.38 0.49 3.46 16 18 C -0.11 -1.60 5.70 30.59 0.17 -1.43 16 19 C 0.06 0.83 5.79 71.98 0.42 1.24 16 20 O -0.39 -6.33 9.98 -148.98 -1.49 -7.82 16 21 C 0.05 0.59 3.59 31.61 0.11 0.70 16 22 H 0.10 0.78 7.84 -2.39 -0.02 0.76 16 23 C -0.15 -1.47 6.90 31.61 0.22 -1.25 16 24 C 0.04 0.42 7.63 72.48 0.55 0.97 16 25 O -0.40 -7.29 11.66 -148.98 -1.74 -9.02 16 26 C 0.02 0.24 7.40 72.49 0.54 0.78 16 27 C -0.10 -4.30 9.89 22.13 0.22 -4.08 16 28 C -0.22 -10.87 9.74 22.48 0.22 -10.65 16 29 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 30 H 0.10 5.75 6.17 -2.91 -0.02 5.73 16 31 H 0.09 4.91 6.38 -2.92 -0.02 4.89 16 32 H 0.42 10.02 8.83 -92.71 -0.82 9.21 16 33 H 0.41 6.43 8.49 -92.70 -0.79 5.65 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 0.75 8.10 -2.39 -0.02 0.74 16 39 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.08 0.95 8.00 -2.39 -0.02 0.93 16 41 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.09 1.29 8.09 -2.38 -0.02 1.27 16 46 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 47 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 Total: -1.00 -76.97 389.75 -0.39 -77.35 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -0.61 Total: 36.68 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: 5.58 Total: -19.17 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -4.11 Total: -89.75 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -3.28 Total: -46.43 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.33 kcal Total: -76.97 -0.39 -77.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119030243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.421 kcal (2) G-P(sol) polarization free energy of solvation -76.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds