Wall clock time and date at job start Tue Mar 31 2020 23:23:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00569 * 2 1 4 4 H 1.48498 * 109.47281 * 270.00382 * 3 2 1 5 5 H 1.48500 * 109.46797 * 30.00321 * 3 2 1 6 6 H 1.48496 * 109.47312 * 149.99998 * 3 2 1 7 7 C 1.38958 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99660 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99832 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00222 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99992 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47508 * 179.97438 * 12 10 9 14 14 C 1.47011 * 110.99683 * 287.70203 * 13 12 10 15 15 C 1.53094 * 109.25540 * 177.60572 * 14 13 12 16 16 O 1.43015 * 109.26071 * 56.84799 * 15 14 13 17 17 C 1.43013 * 113.73769 * 301.32955 * 16 15 14 18 18 C 1.47011 * 111.00177 * 164.06416 * 13 12 10 19 19 H 1.08998 * 109.54593 * 62.43380 * 18 13 12 20 20 C 1.53004 * 109.50550 * 302.32564 * 18 13 12 21 21 C 1.52996 * 109.47194 * 297.79331 * 20 18 13 22 22 H 1.09005 * 109.46962 * 305.55898 * 21 20 18 23 23 O 1.42900 * 109.47301 * 65.55877 * 21 20 18 24 24 C 1.50705 * 109.47075 * 185.56121 * 21 20 18 25 25 C 1.38235 * 120.00069 * 99.99780 * 24 21 20 26 26 C 1.38233 * 119.99917 * 180.02562 * 25 24 21 27 27 C 1.38229 * 120.00051 * 359.95574 * 26 25 24 28 28 C 1.38238 * 120.00015 * 0.28432 * 27 26 25 29 29 C 1.38231 * 119.99948 * 280.02196 * 24 21 20 30 30 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99811 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47529 * 59.99775 * 12 10 9 33 33 H 1.09010 * 109.47257 * 299.99832 * 12 10 9 34 34 H 1.08999 * 109.50889 * 57.66701 * 14 13 12 35 35 H 1.09006 * 109.53942 * 297.56004 * 14 13 12 36 36 H 1.08994 * 109.51097 * 296.90834 * 15 14 13 37 37 H 1.09008 * 109.54206 * 176.79921 * 15 14 13 38 38 H 1.09008 * 109.50511 * 298.73409 * 17 16 15 39 39 H 1.09000 * 109.51185 * 178.60788 * 17 16 15 40 40 H 1.09002 * 109.46889 * 177.79405 * 20 18 13 41 41 H 1.09001 * 109.47341 * 57.79274 * 20 18 13 42 42 H 0.96697 * 113.99862 * 60.00184 * 23 21 20 43 43 H 1.08000 * 120.00113 * 0.02562 * 25 24 21 44 44 H 1.08004 * 119.99775 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.99791 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.99757 * 179.72192 * 28 27 26 47 47 H 1.08003 * 119.99767 * 0.02562 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4471 -3.4211 0.0000 12 6 5.5606 -2.3708 0.0000 13 7 6.0503 -3.7558 0.0006 14 6 5.8324 -4.3910 1.3084 15 6 6.3010 -5.8471 1.2468 16 8 7.6742 -5.8844 0.8489 17 6 7.9223 -5.2748 -0.4208 18 6 7.4701 -3.8129 -0.3762 19 1 8.0646 -3.2703 0.3589 20 6 7.6586 -3.1774 -1.7552 21 6 6.8703 -3.9746 -2.7962 22 1 7.1631 -5.0235 -2.7487 23 8 5.4718 -3.8578 -2.5266 24 6 7.1637 -3.4329 -4.1716 25 6 8.0709 -4.0795 -4.9900 26 6 8.3405 -3.5823 -6.2514 27 6 7.7022 -2.4391 -6.6946 28 6 6.7987 -1.7897 -5.8742 29 6 6.5262 -2.2892 -4.6145 30 1 -0.4850 0.8401 0.0004 31 1 3.8648 -0.3635 0.0004 32 1 5.9240 -1.8570 0.8899 33 1 5.9240 -1.8570 -0.8901 34 1 4.7713 -4.3603 1.5557 35 1 6.3996 -3.8580 2.0716 36 1 5.6972 -6.3936 0.5224 37 1 6.1944 -6.3064 2.2297 38 1 7.3656 -5.8046 -1.1939 39 1 8.9883 -5.3194 -0.6440 40 1 8.7167 -3.1846 -2.0170 41 1 7.2966 -2.1495 -1.7342 42 1 5.1408 -2.9496 -2.5522 43 1 8.5690 -4.9731 -4.6440 44 1 9.0495 -4.0872 -6.8907 45 1 7.9132 -2.0504 -7.6799 46 1 6.3035 -0.8939 -6.2189 47 1 5.8180 -1.7836 -3.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157914899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:59 Heat of formation + Delta-G solvation = -76.163753 kcal Electronic energy + Delta-G solvation = -30229.414486 eV Core-core repulsion = 26185.083955 eV Total energy + Delta-G solvation = -4044.330531 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.35522 -39.30879 -38.10212 -36.91101 -35.21360 -33.88299 -32.71958 -31.64691 -31.32308 -30.96050 -29.23614 -27.77092 -25.57051 -24.87345 -23.56195 -22.72932 -22.24816 -21.25375 -19.66775 -19.26050 -18.27811 -17.59713 -16.76312 -16.24907 -15.86799 -15.77705 -15.66500 -15.40699 -14.92413 -14.74940 -14.64118 -14.18092 -13.98952 -13.84572 -13.61468 -13.45728 -13.30749 -13.10626 -12.84514 -12.52296 -12.32130 -12.04844 -11.87010 -11.78138 -11.59425 -11.35783 -11.25922 -11.17890 -11.02440 -10.64192 -10.56694 -10.39606 -9.96465 -9.75462 -9.52303 -9.46741 -9.05231 -8.83367 -8.49773 -8.15121 -7.85752 -6.29240 -3.80263 1.20342 1.26813 3.01459 3.05154 3.14414 3.62069 3.73512 3.80784 3.93947 4.10630 4.42625 4.61117 4.70622 4.75519 4.76690 4.85004 4.94470 4.98925 5.09282 5.18720 5.22087 5.25183 5.29658 5.41239 5.42601 5.43683 5.52522 5.56196 5.69630 5.71844 5.79137 5.82578 5.83784 5.88757 5.94592 6.03073 6.14500 6.22008 6.32067 6.38132 6.51045 6.85817 7.14937 7.15370 7.32377 7.60779 7.96229 8.17294 8.63187 8.98586 9.45004 9.87858 10.84184 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.004567 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.028529 B = 6130.107605 C = 8645.513732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.301 4.301 8 H 0.120 0.880 9 N -0.597 5.597 10 C 0.455 3.545 11 O -0.545 6.545 12 C 0.039 3.961 13 N -0.484 5.484 14 C 0.021 3.979 15 C 0.067 3.933 16 O -0.391 6.391 17 C 0.069 3.931 18 C 0.052 3.948 19 H 0.045 0.955 20 C -0.145 4.145 21 C 0.150 3.850 22 H 0.105 0.895 23 O -0.513 6.513 24 C -0.112 4.112 25 C -0.114 4.114 26 C -0.121 4.121 27 C -0.126 4.126 28 C -0.116 4.116 29 C -0.111 4.111 30 H 0.272 0.728 31 H 0.368 0.632 32 H 0.045 0.955 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.029 0.971 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.366 0.634 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.545 -4.107 -7.239 22.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.161 4.161 3 Si 0.704 3.296 4 H -0.197 1.197 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.430 4.430 8 H 0.137 0.863 9 N -0.238 5.238 10 C 0.240 3.760 11 O -0.425 6.425 12 C -0.092 4.092 13 N -0.209 5.209 14 C -0.107 4.107 15 C -0.010 4.010 16 O -0.309 6.309 17 C -0.009 4.009 18 C -0.057 4.057 19 H 0.063 0.937 20 C -0.183 4.183 21 C 0.089 3.911 22 H 0.122 0.878 23 O -0.317 6.317 24 C -0.112 4.112 25 C -0.132 4.132 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.134 4.134 29 C -0.129 4.129 30 H 0.083 0.917 31 H 0.200 0.800 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.123 0.877 35 H 0.047 0.953 36 H 0.082 0.918 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.213 0.787 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 19.833 -5.723 -7.411 21.932 hybrid contribution 0.841 2.892 0.305 3.028 sum 20.674 -2.830 -7.106 22.044 Atomic orbital electron populations 1.69620 1.05610 1.27349 1.49790 1.25012 0.95428 0.97809 0.97895 0.86714 0.79753 0.84343 0.78787 1.19706 1.20288 1.19659 1.19412 0.79229 0.96536 1.47804 0.86270 1.42239 1.07470 1.06067 1.67983 1.19598 0.87870 0.84538 0.83992 1.90574 1.69086 1.30651 1.52196 1.21997 0.95949 0.90113 1.01180 1.61792 1.14353 1.15934 1.28832 1.22852 1.03657 0.94984 0.89192 1.22663 0.81894 0.95831 1.00595 1.87920 1.26986 1.79318 1.36694 1.22739 1.00402 0.91287 0.86422 1.22243 0.89984 0.97370 0.96121 0.93682 1.22423 1.01118 1.00238 0.94484 1.20770 0.83685 0.99383 0.87218 0.87787 1.86886 1.19861 1.31990 1.92955 1.20834 0.96931 0.95719 0.97764 1.20987 0.98183 0.99840 0.94162 1.21120 1.00014 0.96641 0.96136 1.21145 0.97406 0.96116 0.99692 1.21155 0.98028 0.99982 0.94218 1.20976 0.99417 0.95941 0.96524 0.91705 0.79993 0.93704 0.89570 0.87705 0.95257 0.91773 0.88863 0.91709 0.89115 0.90438 0.90778 0.78684 0.86091 0.86219 0.86292 0.86006 0.86102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.60 13.96 55.50 0.77 -24.83 16 2 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 3 Si 0.88 19.06 27.74 -169.99 -4.71 14.34 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.30 -8.29 10.16 -14.93 -0.15 -8.45 16 8 H 0.12 3.78 7.39 -52.48 -0.39 3.40 16 9 N -0.60 -13.60 5.09 -10.96 -0.06 -13.66 16 10 C 0.45 9.74 7.29 -10.99 -0.08 9.66 16 11 O -0.55 -13.89 14.43 5.54 0.08 -13.81 16 12 C 0.04 0.62 4.27 -4.97 -0.02 0.60 16 13 N -0.48 -7.35 2.65 -227.77 -0.60 -7.96 16 14 C 0.02 0.33 5.30 -3.71 -0.02 0.31 16 15 C 0.07 0.92 7.01 37.21 0.26 1.18 16 16 O -0.39 -5.37 10.83 -35.23 -0.38 -5.75 16 17 C 0.07 0.80 5.98 37.21 0.22 1.02 16 18 C 0.05 0.63 2.28 -67.60 -0.15 0.47 16 19 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 20 C -0.14 -1.50 4.47 -26.73 -0.12 -1.62 16 21 C 0.15 1.75 2.95 -27.88 -0.08 1.67 16 22 H 0.10 1.19 5.88 -51.93 -0.31 0.88 16 23 O -0.51 -8.04 10.99 -35.23 -0.39 -8.43 16 24 C -0.11 -1.26 4.97 -104.62 -0.52 -1.78 16 25 C -0.11 -1.13 9.67 -39.58 -0.38 -1.52 16 26 C -0.12 -1.13 10.05 -39.59 -0.40 -1.53 16 27 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 28 C -0.12 -1.22 10.05 -39.58 -0.40 -1.61 16 29 C -0.11 -1.27 9.32 -39.59 -0.37 -1.64 16 30 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.37 7.40 5.76 -40.82 -0.24 7.17 16 32 H 0.04 0.67 8.05 -51.93 -0.42 0.25 16 33 H 0.09 1.16 4.76 -51.92 -0.25 0.92 16 34 H 0.10 1.93 6.42 -51.93 -0.33 1.60 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.09 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.06 0.79 6.10 -51.92 -0.32 0.47 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.77 5.94 -51.93 -0.31 0.46 16 42 H 0.37 5.59 6.08 45.56 0.28 5.87 16 43 H 0.12 0.97 8.04 -52.49 -0.42 0.55 16 44 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 47 H 0.12 1.36 6.79 -52.48 -0.36 1.00 16 LS Contribution 368.27 15.07 5.55 5.55 Total: -1.00 -32.86 368.27 -8.47 -41.33 By element: Atomic # 1 Polarization: 23.03 SS G_CDS: -6.03 Total: 17.01 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -2.71 Total: -3.81 kcal Atomic # 7 Polarization: -46.56 SS G_CDS: 0.11 Total: -46.44 kcal Atomic # 8 Polarization: -27.30 SS G_CDS: -0.69 Total: -27.99 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -4.71 Total: 14.34 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.86 -8.47 -41.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157914899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.829 kcal (2) G-P(sol) polarization free energy of solvation -32.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds