Wall clock time and date at job start Tue Mar 31 2020 23:23:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86798 * 120.00569 * 2 1 4 4 H 1.48498 * 109.47281 * 270.00382 * 3 2 1 5 5 H 1.48500 * 109.46797 * 30.00321 * 3 2 1 6 6 H 1.48496 * 109.47312 * 149.99998 * 3 2 1 7 7 C 1.38958 * 119.99849 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99660 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00099 * 180.02562 * 7 2 1 10 10 C 1.34773 * 119.99832 * 179.97438 * 9 7 2 11 11 O 1.21295 * 120.00222 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99992 * 179.97438 * 10 9 7 13 13 N 1.46905 * 109.47508 * 179.97438 * 12 10 9 14 14 C 1.47011 * 110.99683 * 287.70203 * 13 12 10 15 15 C 1.53094 * 109.25540 * 177.60572 * 14 13 12 16 16 O 1.43015 * 109.26071 * 56.84799 * 15 14 13 17 17 C 1.43013 * 113.73769 * 301.32955 * 16 15 14 18 18 C 1.47011 * 111.00177 * 164.06416 * 13 12 10 19 19 H 1.08998 * 109.54593 * 62.43380 * 18 13 12 20 20 C 1.53004 * 109.50550 * 302.32564 * 18 13 12 21 21 C 1.52996 * 109.47194 * 297.79331 * 20 18 13 22 22 H 1.09005 * 109.46962 * 305.55898 * 21 20 18 23 23 O 1.42900 * 109.47301 * 65.55877 * 21 20 18 24 24 C 1.50705 * 109.47075 * 185.56121 * 21 20 18 25 25 C 1.38235 * 120.00069 * 99.99780 * 24 21 20 26 26 C 1.38233 * 119.99917 * 180.02562 * 25 24 21 27 27 C 1.38229 * 120.00051 * 359.95574 * 26 25 24 28 28 C 1.38238 * 120.00015 * 0.28432 * 27 26 25 29 29 C 1.38231 * 119.99948 * 280.02196 * 24 21 20 30 30 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 31 31 H 0.97000 * 119.99811 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47529 * 59.99775 * 12 10 9 33 33 H 1.09010 * 109.47257 * 299.99832 * 12 10 9 34 34 H 1.08999 * 109.50889 * 57.66701 * 14 13 12 35 35 H 1.09006 * 109.53942 * 297.56004 * 14 13 12 36 36 H 1.08994 * 109.51097 * 296.90834 * 15 14 13 37 37 H 1.09008 * 109.54206 * 176.79921 * 15 14 13 38 38 H 1.09008 * 109.50511 * 298.73409 * 17 16 15 39 39 H 1.09000 * 109.51185 * 178.60788 * 17 16 15 40 40 H 1.09002 * 109.46889 * 177.79405 * 20 18 13 41 41 H 1.09001 * 109.47341 * 57.79274 * 20 18 13 42 42 H 0.96697 * 113.99862 * 60.00184 * 23 21 20 43 43 H 1.08000 * 120.00113 * 0.02562 * 25 24 21 44 44 H 1.08004 * 119.99775 * 179.97438 * 26 25 24 45 45 H 1.07998 * 119.99791 * 179.97438 * 27 26 25 46 46 H 1.08002 * 119.99757 * 179.72192 * 28 27 26 47 47 H 1.08003 * 119.99767 * 0.02562 * 29 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2483 1.6176 0.0000 4 1 2.4957 2.0464 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7000 7 6 2.0089 -1.2034 -0.0005 8 1 1.4688 -2.1387 -0.0005 9 7 3.3798 -1.2035 0.0000 10 6 4.0536 -2.3707 0.0000 11 8 3.4471 -3.4211 0.0000 12 6 5.5606 -2.3708 0.0000 13 7 6.0503 -3.7558 0.0006 14 6 5.8324 -4.3910 1.3084 15 6 6.3010 -5.8471 1.2468 16 8 7.6742 -5.8844 0.8489 17 6 7.9223 -5.2748 -0.4208 18 6 7.4701 -3.8129 -0.3762 19 1 8.0646 -3.2703 0.3589 20 6 7.6586 -3.1774 -1.7552 21 6 6.8703 -3.9746 -2.7962 22 1 7.1631 -5.0235 -2.7487 23 8 5.4718 -3.8578 -2.5266 24 6 7.1637 -3.4329 -4.1716 25 6 8.0709 -4.0795 -4.9900 26 6 8.3405 -3.5823 -6.2514 27 6 7.7022 -2.4391 -6.6946 28 6 6.7987 -1.7897 -5.8742 29 6 6.5262 -2.2892 -4.6145 30 1 -0.4850 0.8401 0.0004 31 1 3.8648 -0.3635 0.0004 32 1 5.9240 -1.8570 0.8899 33 1 5.9240 -1.8570 -0.8901 34 1 4.7713 -4.3603 1.5557 35 1 6.3996 -3.8580 2.0716 36 1 5.6972 -6.3936 0.5224 37 1 6.1944 -6.3064 2.2297 38 1 7.3656 -5.8046 -1.1939 39 1 8.9883 -5.3194 -0.6440 40 1 8.7167 -3.1846 -2.0170 41 1 7.2966 -2.1495 -1.7342 42 1 5.1408 -2.9496 -2.5522 43 1 8.5690 -4.9731 -4.6440 44 1 9.0495 -4.0872 -6.8907 45 1 7.9132 -2.0504 -7.6799 46 1 6.3035 -0.8939 -6.2189 47 1 5.8180 -1.7836 -3.9747 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157914899.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:23:58 Heat of formation + Delta-G solvation = -100.817793 kcal Electronic energy + Delta-G solvation = -30230.483565 eV Core-core repulsion = 26185.083955 eV Total energy + Delta-G solvation = -4045.399611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.41871 -40.26205 -39.71177 -37.89816 -36.47128 -35.75687 -33.78904 -33.68280 -32.17760 -31.70741 -30.52209 -28.78307 -27.15844 -25.79001 -25.11911 -23.53055 -23.21266 -22.11541 -21.24194 -20.65404 -20.08908 -18.47011 -17.98134 -17.34033 -17.27263 -16.84836 -16.69753 -16.63993 -16.28358 -15.78716 -15.67884 -15.50416 -15.27096 -15.04091 -14.74943 -14.70997 -14.43972 -14.21009 -14.18944 -13.83325 -13.66979 -13.43758 -13.00572 -12.94606 -12.61757 -12.55507 -12.38862 -12.28088 -12.20406 -11.97492 -11.91015 -11.61287 -11.48799 -11.38876 -10.77473 -10.55148 -10.22810 -10.16909 -9.80386 -9.60815 -9.05866 -8.36734 -5.96102 0.44288 0.51673 1.30289 1.35972 1.44254 2.04887 2.24968 2.54227 2.87290 2.93250 3.16852 3.24274 3.55485 3.70222 3.80796 3.96149 3.99415 4.04612 4.14264 4.18987 4.23521 4.28939 4.31497 4.32635 4.39899 4.46234 4.54250 4.55826 4.68922 4.70941 4.77198 4.84908 4.92370 4.95158 5.06804 5.08711 5.13071 5.21046 5.57785 5.58954 5.64383 5.71454 5.93217 6.04166 6.11602 6.13526 6.24881 6.66047 6.88112 6.96159 7.47531 8.07272 8.81350 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.008764 B = 0.004567 C = 0.003238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3194.028529 B = 6130.107605 C = 8645.513732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.016 4.016 3 Si 0.961 3.039 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.234 1.234 7 C -0.319 4.319 8 H 0.055 0.945 9 N -0.598 5.598 10 C 0.460 3.540 11 O -0.591 6.591 12 C 0.052 3.948 13 N -0.502 5.502 14 C 0.023 3.977 15 C 0.074 3.926 16 O -0.396 6.396 17 C 0.064 3.936 18 C 0.054 3.946 19 H 0.057 0.943 20 C -0.136 4.136 21 C 0.150 3.850 22 H 0.106 0.894 23 O -0.542 6.542 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.124 4.124 27 C -0.130 4.130 28 C -0.129 4.129 29 C -0.130 4.130 30 H 0.277 0.723 31 H 0.386 0.614 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.041 0.959 36 H 0.046 0.954 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.076 0.924 42 H 0.362 0.638 43 H 0.140 0.860 44 H 0.145 0.855 45 H 0.140 0.860 46 H 0.131 0.869 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.020 -2.581 -8.081 26.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.214 4.214 3 Si 0.782 3.218 4 H -0.181 1.181 5 H -0.204 1.204 6 H -0.157 1.157 7 C -0.448 4.448 8 H 0.073 0.927 9 N -0.241 5.241 10 C 0.247 3.753 11 O -0.473 6.473 12 C -0.079 4.079 13 N -0.227 5.227 14 C -0.106 4.106 15 C -0.003 4.003 16 O -0.315 6.315 17 C -0.012 4.012 18 C -0.054 4.054 19 H 0.075 0.925 20 C -0.173 4.173 21 C 0.091 3.909 22 H 0.124 0.876 23 O -0.347 6.347 24 C -0.123 4.123 25 C -0.138 4.138 26 C -0.142 4.142 27 C -0.148 4.148 28 C -0.147 4.147 29 C -0.148 4.148 30 H 0.086 0.914 31 H 0.221 0.779 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.064 0.936 37 H 0.129 0.871 38 H 0.074 0.926 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.094 0.906 42 H 0.209 0.791 43 H 0.158 0.842 44 H 0.162 0.838 45 H 0.158 0.842 46 H 0.149 0.851 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 24.356 -4.215 -8.257 26.061 hybrid contribution -0.567 2.234 0.499 2.358 sum 23.789 -1.981 -7.758 25.100 Atomic orbital electron populations 1.69812 1.08135 1.28966 1.51112 1.26038 0.96351 1.02480 0.96503 0.85417 0.79404 0.77123 0.79887 1.18064 1.20429 1.15699 1.18960 0.81519 0.94715 1.49614 0.92715 1.42046 1.05661 1.07491 1.68901 1.20716 0.90370 0.83253 0.80963 1.90561 1.70939 1.32451 1.53352 1.21877 0.91013 0.91440 1.03578 1.61706 1.16935 1.15410 1.28657 1.22741 1.01478 0.96428 0.89917 1.22567 0.82013 0.94585 1.01113 1.87916 1.26253 1.79591 1.37699 1.22962 1.02269 0.90677 0.85319 1.22345 0.87718 0.98059 0.97254 0.92529 1.22375 1.02525 0.99661 0.92756 1.20872 0.81976 0.99859 0.88221 0.87641 1.86868 1.22539 1.31921 1.93323 1.20796 0.97766 0.95970 0.97727 1.21265 0.97885 1.00304 0.94324 1.21471 1.00052 0.96466 0.96165 1.21472 0.96772 0.96099 1.00458 1.21373 0.98568 1.00624 0.94126 1.21070 0.99944 0.96611 0.97207 0.91385 0.77891 0.91543 0.86500 0.91537 0.94134 0.93588 0.87098 0.92572 0.85767 0.87585 0.90553 0.79070 0.84213 0.83750 0.84191 0.85108 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.82 13.96 21.67 0.30 -56.52 16 2 C -0.02 -0.87 5.50 84.93 0.47 -0.40 16 3 Si 0.96 38.64 27.74 68.60 1.90 40.54 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.23 -7.91 6.52 99.48 0.65 -7.26 16 7 C -0.32 -18.45 10.16 84.04 0.85 -17.60 16 8 H 0.05 3.80 7.39 -2.91 -0.02 3.78 16 9 N -0.60 -27.49 5.09 -306.98 -1.56 -29.05 16 10 C 0.46 20.06 7.29 87.66 0.64 20.70 16 11 O -0.59 -31.89 14.43 -3.07 -0.04 -31.93 16 12 C 0.05 1.57 4.27 85.56 0.36 1.93 16 13 N -0.50 -14.71 2.65 -874.53 -2.32 -17.03 16 14 C 0.02 0.70 5.30 86.31 0.46 1.16 16 15 C 0.07 2.02 7.01 72.01 0.50 2.52 16 16 O -0.40 -10.08 10.83 -148.98 -1.61 -11.69 16 17 C 0.06 1.32 5.98 72.01 0.43 1.75 16 18 C 0.05 1.16 2.28 44.93 0.10 1.26 16 19 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 20 C -0.14 -2.37 4.47 30.59 0.14 -2.24 16 21 C 0.15 3.28 2.95 29.85 0.09 3.37 16 22 H 0.11 2.24 5.88 -2.38 -0.01 2.23 16 23 O -0.54 -17.11 10.99 -148.98 -1.64 -18.75 16 24 C -0.12 -2.54 4.97 -19.87 -0.10 -2.64 16 25 C -0.12 -2.08 9.67 22.27 0.22 -1.86 16 26 C -0.12 -1.94 10.05 22.27 0.22 -1.72 16 27 C -0.13 -2.17 10.05 22.27 0.22 -1.94 16 28 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 29 C -0.13 -2.87 9.32 22.27 0.21 -2.66 16 30 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.39 14.76 5.76 -92.71 -0.53 14.23 16 32 H 0.07 1.77 8.05 -2.39 -0.02 1.75 16 33 H 0.12 2.84 4.76 -2.38 -0.01 2.83 16 34 H 0.07 2.57 6.42 -2.39 -0.02 2.55 16 35 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 2.56 8.14 -2.38 -0.02 2.54 16 38 H 0.06 1.27 6.10 -2.38 -0.01 1.25 16 39 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.08 1.33 5.94 -2.39 -0.01 1.31 16 42 H 0.36 11.29 6.08 -74.06 -0.45 10.84 16 43 H 0.14 1.80 8.04 -2.91 -0.02 1.78 16 44 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 45 H 0.14 1.66 8.06 -2.91 -0.02 1.63 16 46 H 0.13 2.18 8.06 -2.91 -0.02 2.16 16 47 H 0.11 2.55 6.79 -2.91 -0.02 2.53 16 Total: -1.00 -77.83 368.27 0.03 -77.79 By element: Atomic # 1 Polarization: 47.34 SS G_CDS: -0.03 Total: 47.30 kcal Atomic # 6 Polarization: -5.71 SS G_CDS: 5.04 Total: -0.67 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -3.58 Total: -102.60 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -3.29 Total: -62.37 kcal Atomic # 14 Polarization: 38.64 SS G_CDS: 1.90 Total: 40.54 kcal Total: -77.83 0.03 -77.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157914899.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.026 kcal (2) G-P(sol) polarization free energy of solvation -77.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds