Wall clock time and date at job start Tue Mar 31 2020 23:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 120.00413 * 2 1 4 4 H 1.48500 * 109.46721 * 239.99328 * 3 2 1 5 5 H 1.48491 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47127 * 119.99836 * 3 2 1 7 7 C 1.38959 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99567 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00026 * 359.73325 * 7 2 1 10 10 C 1.34768 * 120.00087 * 180.27317 * 9 7 2 11 11 O 1.21292 * 120.00182 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00120 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47035 * 179.97438 * 12 10 9 14 14 C 1.47017 * 110.99840 * 73.32253 * 13 12 10 15 15 C 1.53097 * 109.25683 * 182.38944 * 14 13 12 16 16 O 1.43023 * 109.26009 * 303.14998 * 15 14 13 17 17 C 1.43016 * 113.73445 * 58.67271 * 16 15 14 18 18 C 1.47013 * 110.99898 * 196.95476 * 13 12 10 19 19 H 1.08999 * 109.50774 * 297.54571 * 18 13 12 20 20 C 1.52998 * 109.50681 * 57.67614 * 18 13 12 21 21 C 1.53001 * 109.47358 * 183.17054 * 20 18 13 22 22 H 1.09001 * 109.46939 * 305.45844 * 21 20 18 23 23 O 1.42894 * 109.47069 * 65.46087 * 21 20 18 24 24 C 1.50699 * 109.47118 * 185.45865 * 21 20 18 25 25 C 1.38234 * 120.00282 * 279.72729 * 24 21 20 26 26 C 1.38236 * 119.99583 * 179.76683 * 25 24 21 27 27 C 1.38237 * 120.00395 * 0.50545 * 26 25 24 28 28 C 1.38229 * 119.99953 * 359.75039 * 27 26 25 29 29 C 1.38238 * 120.00024 * 359.97438 * 28 27 26 30 30 H 0.96998 * 119.99930 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99939 * 0.26816 * 9 7 2 32 32 H 1.08998 * 109.47100 * 300.00043 * 12 10 9 33 33 H 1.09004 * 109.47011 * 60.00127 * 12 10 9 34 34 H 1.08992 * 109.50762 * 302.32472 * 14 13 12 35 35 H 1.09000 * 109.50371 * 62.41546 * 14 13 12 36 36 H 1.08997 * 109.51096 * 63.08724 * 15 14 13 37 37 H 1.09003 * 109.50489 * 183.17579 * 15 14 13 38 38 H 1.08996 * 109.51026 * 61.26393 * 17 16 15 39 39 H 1.08997 * 109.50449 * 181.39793 * 17 16 15 40 40 H 1.09000 * 109.47057 * 303.17325 * 20 18 13 41 41 H 1.09003 * 109.47127 * 63.17169 * 20 18 13 42 42 H 0.96705 * 114.00069 * 54.29482 * 23 21 20 43 43 H 1.07995 * 119.99713 * 0.02562 * 25 24 21 44 44 H 1.08004 * 119.99694 * 180.23198 * 26 25 24 45 45 H 1.08000 * 120.00340 * 179.72462 * 27 26 25 46 46 H 1.07998 * 120.00609 * 179.97438 * 28 27 26 47 47 H 1.08008 * 120.00255 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6961 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2035 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3232 -2.3907 0.0066 10 6 1.9970 -3.5579 0.0127 11 8 3.2099 -3.5580 0.0123 12 6 1.2434 -4.8629 0.0199 13 7 2.1980 -5.9795 0.0250 14 6 2.8406 -6.1172 1.3401 15 6 3.8680 -7.2508 1.2839 16 8 3.2186 -8.4560 0.8697 17 6 2.5827 -8.3576 -0.4074 18 6 1.5422 -7.2351 -0.3683 19 1 0.7664 -7.4830 0.3561 20 6 0.9149 -7.0715 -1.7541 21 6 0.1654 -8.3516 -2.1291 22 1 0.8396 -9.2042 -2.0481 23 8 -0.9406 -8.5330 -1.2427 24 6 -0.3384 -8.2422 -3.5452 25 6 -1.4945 -7.5339 -3.8148 26 6 -1.9538 -7.4296 -5.1144 27 6 -1.2630 -8.0424 -6.1430 28 6 -0.1099 -8.7551 -5.8728 29 6 0.3527 -8.8547 -4.5739 30 1 -0.4850 0.8400 -0.0004 31 1 0.3532 -2.3907 0.0066 32 1 0.6170 -4.9159 0.9104 33 1 0.6165 -4.9254 -0.8696 34 1 3.3415 -5.1847 1.5999 35 1 2.0855 -6.3466 2.0920 36 1 4.6522 -6.9964 0.5708 37 1 4.3066 -7.3939 2.2714 38 1 3.3293 -8.1352 -1.1697 39 1 2.0910 -9.3014 -0.6429 40 1 0.2183 -6.2332 -1.7409 41 1 1.6985 -6.8812 -2.4875 42 1 -1.5369 -7.7730 -1.1971 43 1 -2.0364 -7.0585 -3.0106 44 1 -2.8550 -6.8730 -5.3255 45 1 -1.6243 -7.9646 -7.1578 46 1 0.4298 -9.2342 -6.6763 47 1 1.2535 -9.4119 -4.3626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157915198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:10 Heat of formation + Delta-G solvation = -94.894742 kcal Electronic energy + Delta-G solvation = -29229.458769 eV Core-core repulsion = 25184.316001 eV Total energy + Delta-G solvation = -4045.142768 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.28190 -39.42249 -37.97805 -37.23738 -35.40573 -33.88788 -32.83859 -31.43491 -31.25283 -31.06878 -29.13937 -27.85485 -25.51899 -24.93217 -23.73208 -22.81883 -22.27250 -21.10501 -20.03927 -19.20503 -17.90475 -17.73270 -16.78699 -16.28327 -16.13304 -15.95690 -15.66202 -15.47274 -14.93085 -14.68117 -14.43678 -14.31079 -14.03203 -13.92777 -13.70136 -13.55857 -13.52226 -13.25432 -13.07600 -12.65813 -12.20982 -11.98960 -11.90642 -11.53524 -11.49233 -11.42820 -11.18019 -11.15165 -10.96293 -10.80068 -10.45589 -10.36553 -10.22560 -10.19943 -9.52091 -9.48292 -9.12970 -8.93898 -8.48425 -7.98866 -7.90713 -6.42857 -3.83618 1.10635 1.19135 3.18842 3.24642 3.28773 3.50938 3.77773 3.89970 3.92534 4.19095 4.26062 4.38880 4.58196 4.73795 4.76245 4.88381 4.92619 4.97869 5.05373 5.12101 5.20988 5.23590 5.28198 5.33511 5.38536 5.45505 5.51878 5.65786 5.69781 5.74973 5.80405 5.81509 5.84964 5.97823 5.98556 6.15677 6.23445 6.23520 6.27464 6.30149 6.36448 6.76915 7.15856 7.16835 7.32185 7.37483 7.53755 8.04955 8.60833 9.17146 9.53376 10.05480 10.74895 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009371 B = 0.003354 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.312800 B = 8347.278957 C =10579.775605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.023 3.977 3 Si 0.930 3.070 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.299 4.299 8 H 0.102 0.898 9 N -0.565 5.565 10 C 0.445 3.555 11 O -0.577 6.577 12 C 0.040 3.960 13 N -0.507 5.507 14 C 0.023 3.977 15 C 0.065 3.935 16 O -0.388 6.388 17 C 0.070 3.930 18 C 0.052 3.948 19 H 0.055 0.945 20 C -0.144 4.144 21 C 0.147 3.853 22 H 0.109 0.891 23 O -0.553 6.553 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.117 4.117 27 C -0.122 4.122 28 C -0.119 4.119 29 C -0.110 4.110 30 H 0.272 0.728 31 H 0.391 0.609 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.034 0.966 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.058 0.942 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.374 0.626 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.122 0.878 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 -17.908 -6.843 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.757 3.243 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.199 1.199 7 C -0.429 4.429 8 H 0.120 0.880 9 N -0.202 5.202 10 C 0.230 3.770 11 O -0.461 6.461 12 C -0.091 4.091 13 N -0.232 5.232 14 C -0.105 4.105 15 C -0.011 4.011 16 O -0.307 6.307 17 C -0.007 4.007 18 C -0.057 4.057 19 H 0.073 0.927 20 C -0.182 4.182 21 C 0.087 3.913 22 H 0.126 0.874 23 O -0.359 6.359 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.135 4.135 27 C -0.140 4.140 28 C -0.137 4.137 29 C -0.129 4.129 30 H 0.082 0.918 31 H 0.224 0.776 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.122 0.878 35 H 0.052 0.948 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.106 0.894 42 H 0.222 0.778 43 H 0.138 0.862 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.140 0.860 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.485 -18.378 -6.973 19.813 hybrid contribution -1.196 1.694 0.185 2.082 sum -3.680 -16.684 -6.788 18.384 Atomic orbital electron populations 1.69596 1.05930 1.28237 1.50638 1.25243 0.95616 0.99665 0.97338 0.85932 0.78781 0.80526 0.79072 1.19901 1.20978 1.19926 1.19642 0.93309 0.82224 1.47692 0.88008 1.41852 1.09119 1.04573 1.64653 1.19722 0.88426 0.84435 0.84421 1.90501 1.13656 1.86944 1.54949 1.21984 0.94104 0.91353 1.01688 1.61780 1.30605 1.02071 1.28794 1.22825 0.97456 1.01112 0.89123 1.22678 0.94410 0.83559 1.00496 1.87941 1.71683 1.35083 1.35988 1.22715 0.94298 0.97702 0.85986 1.22219 0.95924 0.91033 0.96515 0.92677 1.22422 1.01053 0.97442 0.97234 1.20903 0.87559 0.98396 0.84392 0.87367 1.86617 1.39018 1.44704 1.65530 1.20558 0.96089 0.98224 0.96345 1.20901 0.96165 0.98698 0.96967 1.21148 1.00031 0.99484 0.92806 1.21179 0.95764 0.97892 0.99195 1.21145 0.96644 0.99299 0.96614 1.21003 0.99725 0.99549 0.92582 0.91843 0.77590 0.93304 0.89076 0.87833 0.94826 0.92024 0.88711 0.92341 0.88796 0.90368 0.89441 0.77776 0.86176 0.85931 0.86127 0.86003 0.85887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 2 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 3 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 8 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 9 N -0.57 -14.14 5.29 -10.96 -0.06 -14.19 16 10 C 0.44 10.34 7.51 -10.99 -0.08 10.26 16 11 O -0.58 -15.33 14.51 5.55 0.08 -15.25 16 12 C 0.04 0.70 5.32 -4.97 -0.03 0.67 16 13 N -0.51 -8.35 4.14 -227.77 -0.94 -9.30 16 14 C 0.02 0.37 5.31 -3.71 -0.02 0.35 16 15 C 0.07 0.92 7.01 37.21 0.26 1.18 16 16 O -0.39 -5.58 10.83 -35.23 -0.38 -5.96 16 17 C 0.07 0.87 5.93 37.21 0.22 1.10 16 18 C 0.05 0.68 2.01 -67.60 -0.14 0.55 16 19 H 0.06 0.76 7.76 -51.93 -0.40 0.35 16 20 C -0.14 -1.63 4.17 -26.73 -0.11 -1.74 16 21 C 0.15 1.44 3.05 -27.88 -0.09 1.35 16 22 H 0.11 0.99 6.20 -51.93 -0.32 0.67 16 23 O -0.55 -5.66 12.63 -35.23 -0.44 -6.11 16 24 C -0.11 -1.12 4.97 -104.62 -0.52 -1.64 16 25 C -0.11 -1.06 9.34 -39.58 -0.37 -1.43 16 26 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.09 10.05 -39.59 -0.40 -1.49 16 28 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 29 C -0.11 -1.04 9.67 -39.58 -0.38 -1.43 16 30 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.39 9.36 7.90 -40.82 -0.32 9.03 16 32 H 0.05 0.80 8.03 -51.93 -0.42 0.39 16 33 H 0.09 1.43 5.44 -51.93 -0.28 1.15 16 34 H 0.10 1.95 6.52 -51.93 -0.34 1.61 16 35 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.09 0.98 6.57 -51.93 -0.34 0.64 16 40 H 0.08 0.90 5.88 -51.93 -0.31 0.60 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.37 2.85 7.69 45.56 0.35 3.20 16 43 H 0.12 0.97 6.89 -52.49 -0.36 0.61 16 44 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 45 H 0.12 0.83 8.06 -52.49 -0.42 0.40 16 46 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 47 H 0.12 0.94 8.04 -52.48 -0.42 0.52 16 LS Contribution 378.19 15.07 5.70 5.70 Total: -1.00 -32.62 378.19 -9.09 -41.72 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -6.06 Total: 14.20 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -2.69 Total: -3.11 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.28 Total: -47.10 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.75 Total: -27.32 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.62 -9.09 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157915198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.179 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds