Wall clock time and date at job start Tue Mar 31 2020 23:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86800 * 120.00413 * 2 1 4 4 H 1.48500 * 109.46721 * 239.99328 * 3 2 1 5 5 H 1.48491 * 109.46908 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47127 * 119.99836 * 3 2 1 7 7 C 1.38959 * 119.99686 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99567 * 180.02562 * 7 2 1 9 9 N 1.37100 * 120.00026 * 359.73325 * 7 2 1 10 10 C 1.34768 * 120.00087 * 180.27317 * 9 7 2 11 11 O 1.21292 * 120.00182 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00120 * 179.97438 * 10 9 7 13 13 N 1.46901 * 109.47035 * 179.97438 * 12 10 9 14 14 C 1.47017 * 110.99840 * 73.32253 * 13 12 10 15 15 C 1.53097 * 109.25683 * 182.38944 * 14 13 12 16 16 O 1.43023 * 109.26009 * 303.14998 * 15 14 13 17 17 C 1.43016 * 113.73445 * 58.67271 * 16 15 14 18 18 C 1.47013 * 110.99898 * 196.95476 * 13 12 10 19 19 H 1.08999 * 109.50774 * 297.54571 * 18 13 12 20 20 C 1.52998 * 109.50681 * 57.67614 * 18 13 12 21 21 C 1.53001 * 109.47358 * 183.17054 * 20 18 13 22 22 H 1.09001 * 109.46939 * 305.45844 * 21 20 18 23 23 O 1.42894 * 109.47069 * 65.46087 * 21 20 18 24 24 C 1.50699 * 109.47118 * 185.45865 * 21 20 18 25 25 C 1.38234 * 120.00282 * 279.72729 * 24 21 20 26 26 C 1.38236 * 119.99583 * 179.76683 * 25 24 21 27 27 C 1.38237 * 120.00395 * 0.50545 * 26 25 24 28 28 C 1.38229 * 119.99953 * 359.75039 * 27 26 25 29 29 C 1.38238 * 120.00024 * 359.97438 * 28 27 26 30 30 H 0.96998 * 119.99930 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99939 * 0.26816 * 9 7 2 32 32 H 1.08998 * 109.47100 * 300.00043 * 12 10 9 33 33 H 1.09004 * 109.47011 * 60.00127 * 12 10 9 34 34 H 1.08992 * 109.50762 * 302.32472 * 14 13 12 35 35 H 1.09000 * 109.50371 * 62.41546 * 14 13 12 36 36 H 1.08997 * 109.51096 * 63.08724 * 15 14 13 37 37 H 1.09003 * 109.50489 * 183.17579 * 15 14 13 38 38 H 1.08996 * 109.51026 * 61.26393 * 17 16 15 39 39 H 1.08997 * 109.50449 * 181.39793 * 17 16 15 40 40 H 1.09000 * 109.47057 * 303.17325 * 20 18 13 41 41 H 1.09003 * 109.47127 * 63.17169 * 20 18 13 42 42 H 0.96705 * 114.00069 * 54.29482 * 23 21 20 43 43 H 1.07995 * 119.99713 * 0.02562 * 25 24 21 44 44 H 1.08004 * 119.99694 * 180.23198 * 26 25 24 45 45 H 1.08000 * 120.00340 * 179.72462 * 27 26 25 46 46 H 1.07998 * 120.00609 * 179.97438 * 28 27 26 47 47 H 1.08008 * 120.00255 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1020 1.6961 -1.2124 5 1 1.2832 2.7464 -0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0088 -1.2035 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3232 -2.3907 0.0066 10 6 1.9970 -3.5579 0.0127 11 8 3.2099 -3.5580 0.0123 12 6 1.2434 -4.8629 0.0199 13 7 2.1980 -5.9795 0.0250 14 6 2.8406 -6.1172 1.3401 15 6 3.8680 -7.2508 1.2839 16 8 3.2186 -8.4560 0.8697 17 6 2.5827 -8.3576 -0.4074 18 6 1.5422 -7.2351 -0.3683 19 1 0.7664 -7.4830 0.3561 20 6 0.9149 -7.0715 -1.7541 21 6 0.1654 -8.3516 -2.1291 22 1 0.8396 -9.2042 -2.0481 23 8 -0.9406 -8.5330 -1.2427 24 6 -0.3384 -8.2422 -3.5452 25 6 -1.4945 -7.5339 -3.8148 26 6 -1.9538 -7.4296 -5.1144 27 6 -1.2630 -8.0424 -6.1430 28 6 -0.1099 -8.7551 -5.8728 29 6 0.3527 -8.8547 -4.5739 30 1 -0.4850 0.8400 -0.0004 31 1 0.3532 -2.3907 0.0066 32 1 0.6170 -4.9159 0.9104 33 1 0.6165 -4.9254 -0.8696 34 1 3.3415 -5.1847 1.5999 35 1 2.0855 -6.3466 2.0920 36 1 4.6522 -6.9964 0.5708 37 1 4.3066 -7.3939 2.2714 38 1 3.3293 -8.1352 -1.1697 39 1 2.0910 -9.3014 -0.6429 40 1 0.2183 -6.2332 -1.7409 41 1 1.6985 -6.8812 -2.4875 42 1 -1.5369 -7.7730 -1.1971 43 1 -2.0364 -7.0585 -3.0106 44 1 -2.8550 -6.8730 -5.3255 45 1 -1.6243 -7.9646 -7.1578 46 1 0.4298 -9.2342 -6.6763 47 1 1.2535 -9.4119 -4.3626 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157915198.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:24:08 Heat of formation + Delta-G solvation = -119.109460 kcal Electronic energy + Delta-G solvation = -29230.508797 eV Core-core repulsion = 25184.316001 eV Total energy + Delta-G solvation = -4046.192797 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.32385 -40.36885 -39.67729 -38.03303 -36.69818 -35.82323 -33.83669 -33.27352 -32.24252 -31.72874 -30.48152 -28.90056 -27.19195 -25.85094 -25.28984 -23.53715 -23.23369 -21.87829 -21.32692 -20.86744 -19.88549 -18.49005 -18.03749 -17.38986 -17.33072 -17.07894 -16.64699 -16.57675 -16.31137 -16.00095 -15.81016 -15.48487 -15.33862 -15.23076 -14.80968 -14.69276 -14.43741 -14.20885 -14.07426 -13.83774 -13.75444 -13.46228 -13.03341 -12.94753 -12.73372 -12.45711 -12.43507 -12.29573 -12.18521 -12.13282 -11.96388 -11.84186 -11.47930 -11.40591 -11.00771 -10.68547 -10.26720 -10.00244 -9.80760 -9.64074 -9.29242 -8.46323 -5.94793 0.41492 0.51364 1.39165 1.41151 1.51725 2.05368 2.26496 2.55855 2.81306 2.92698 3.19744 3.32935 3.52323 3.58735 3.72333 3.91063 3.97026 4.02364 4.12285 4.15818 4.22921 4.23523 4.27119 4.30235 4.38922 4.42532 4.47631 4.54740 4.64825 4.66907 4.72439 4.80573 4.87468 4.90637 5.02912 5.09077 5.15899 5.17903 5.40748 5.56948 5.63682 5.66237 5.79978 5.99206 6.06794 6.11591 6.18061 6.60888 6.72395 7.13335 7.56737 8.12761 8.70861 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.009371 B = 0.003354 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2987.312800 B = 8347.278957 C =10579.775605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.574 5.574 10 C 0.443 3.557 11 O -0.614 6.614 12 C 0.053 3.947 13 N -0.524 5.524 14 C 0.024 3.976 15 C 0.072 3.928 16 O -0.395 6.395 17 C 0.067 3.933 18 C 0.058 3.942 19 H 0.056 0.944 20 C -0.135 4.135 21 C 0.159 3.841 22 H 0.117 0.883 23 O -0.563 6.563 24 C -0.125 4.125 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.131 4.131 28 C -0.128 4.128 29 C -0.123 4.123 30 H 0.277 0.723 31 H 0.395 0.605 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.071 0.929 35 H 0.040 0.960 36 H 0.053 0.947 37 H 0.117 0.883 38 H 0.058 0.942 39 H 0.120 0.880 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.385 0.615 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 -18.832 -7.421 20.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.814 3.186 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.462 4.462 8 H 0.096 0.904 9 N -0.212 5.212 10 C 0.230 3.770 11 O -0.499 6.499 12 C -0.078 4.078 13 N -0.250 5.250 14 C -0.104 4.104 15 C -0.005 4.005 16 O -0.313 6.313 17 C -0.010 4.010 18 C -0.051 4.051 19 H 0.074 0.926 20 C -0.172 4.172 21 C 0.100 3.900 22 H 0.134 0.866 23 O -0.371 6.371 24 C -0.126 4.126 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.149 4.149 28 C -0.146 4.146 29 C -0.141 4.141 30 H 0.087 0.913 31 H 0.229 0.771 32 H 0.082 0.918 33 H 0.131 0.869 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.134 0.866 38 H 0.076 0.924 39 H 0.137 0.863 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.234 0.766 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.212 -19.318 -7.553 20.990 hybrid contribution -0.990 1.929 0.330 2.193 sum -4.202 -17.390 -7.223 19.293 Atomic orbital electron populations 1.69657 1.06786 1.29301 1.50377 1.25993 0.96509 1.02269 0.96324 0.85027 0.77805 0.76833 0.78919 1.19763 1.19490 1.19760 1.19608 0.92655 0.83996 1.49965 0.90371 1.41909 1.09230 1.04655 1.65386 1.20712 0.88305 0.85764 0.82200 1.90474 1.15628 1.87791 1.56040 1.21829 0.93750 0.88765 1.03445 1.61741 1.31021 1.03175 1.29050 1.22756 0.97970 1.00385 0.89339 1.22649 0.93455 0.82881 1.01526 1.87937 1.71767 1.34825 1.36817 1.22898 0.94170 0.98575 0.85309 1.22268 0.95993 0.89467 0.97325 0.92597 1.22335 1.00681 0.98424 0.95800 1.20772 0.87379 0.97554 0.84311 0.86569 1.86593 1.39290 1.45573 1.65596 1.20648 0.96529 0.98898 0.96500 1.21158 0.96447 0.98943 0.97666 1.21432 1.00731 0.99814 0.92907 1.21503 0.95771 0.97517 1.00110 1.21458 0.96824 0.99261 0.97084 1.21293 1.00297 0.99675 0.92801 0.91330 0.77127 0.91754 0.86870 0.91106 0.94153 0.92911 0.86558 0.92353 0.86272 0.90641 0.90396 0.76558 0.85086 0.84630 0.84348 0.84127 0.84446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.34 13.05 21.66 0.28 -49.06 16 2 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 8 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 9 N -0.57 -29.30 5.29 -306.99 -1.62 -30.92 16 10 C 0.44 20.98 7.51 87.66 0.66 21.64 16 11 O -0.61 -33.67 14.51 -3.07 -0.04 -33.71 16 12 C 0.05 1.84 5.32 85.56 0.45 2.29 16 13 N -0.52 -16.96 4.14 -874.53 -3.62 -20.59 16 14 C 0.02 0.76 5.31 86.31 0.46 1.22 16 15 C 0.07 1.96 7.01 72.01 0.50 2.47 16 16 O -0.39 -10.63 10.83 -148.98 -1.61 -12.25 16 17 C 0.07 1.54 5.93 72.02 0.43 1.97 16 18 C 0.06 1.42 2.01 44.93 0.09 1.51 16 19 H 0.06 1.41 7.76 -2.39 -0.02 1.39 16 20 C -0.13 -2.84 4.17 30.59 0.13 -2.71 16 21 C 0.16 2.81 3.05 29.85 0.09 2.90 16 22 H 0.12 1.84 6.20 -2.39 -0.01 1.83 16 23 O -0.56 -10.37 12.63 -148.98 -1.88 -12.25 16 24 C -0.13 -2.32 4.97 -19.86 -0.10 -2.42 16 25 C -0.12 -2.26 9.34 22.27 0.21 -2.05 16 26 C -0.13 -2.27 10.05 22.27 0.22 -2.05 16 27 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 28 C -0.13 -2.08 10.05 22.27 0.22 -1.85 16 29 C -0.12 -2.12 9.67 22.27 0.22 -1.91 16 30 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.40 19.14 7.90 -92.71 -0.73 18.40 16 32 H 0.06 2.05 8.03 -2.39 -0.02 2.03 16 33 H 0.11 3.42 5.44 -2.38 -0.01 3.41 16 34 H 0.07 2.75 6.52 -2.39 -0.02 2.74 16 35 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.12 2.63 8.14 -2.39 -0.02 2.61 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.12 2.14 6.57 -2.39 -0.02 2.13 16 40 H 0.08 1.62 5.88 -2.39 -0.01 1.61 16 41 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 42 H 0.38 5.12 7.69 -74.05 -0.57 4.55 16 43 H 0.13 1.94 6.89 -2.91 -0.02 1.92 16 44 H 0.14 1.86 8.06 -2.91 -0.02 1.84 16 45 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 47 H 0.14 1.85 8.04 -2.91 -0.02 1.82 16 Total: -1.00 -70.24 378.19 -1.68 -71.92 By element: Atomic # 1 Polarization: 41.37 SS G_CDS: -0.29 Total: 41.08 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 5.09 Total: 0.96 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -4.96 Total: -100.57 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -3.54 Total: -58.21 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -70.24 -1.68 -71.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157915198.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.192 kcal (2) G-P(sol) polarization free energy of solvation -70.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds