Wall clock time and date at job start Tue Mar 31 2020 23:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48499 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46959 * 299.99871 * 3 2 1 6 6 H 1.48495 * 109.46979 * 60.00295 * 3 2 1 7 7 C 1.39900 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99631 * 196.82702 * 7 2 1 9 9 C 1.41153 * 119.99947 * 16.83504 * 7 2 1 10 10 C 1.40869 * 120.16052 * 205.35005 * 9 7 2 11 11 C 1.36376 * 119.82844 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16617 * 359.97438 * 11 10 9 13 13 N 1.39242 * 119.83166 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99866 * 34.47284 * 13 12 11 15 15 O 1.21578 * 120.00145 * 5.15062 * 14 13 12 16 16 N 1.34780 * 119.99614 * 185.14112 * 14 13 12 17 17 C 1.46503 * 119.99524 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47187 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.53969 * 59.82500 * 18 17 16 20 20 O 1.42908 * 109.47153 * 300.00026 * 19 18 17 21 21 C 1.53179 * 109.54261 * 299.56114 * 18 17 16 22 22 C 1.53085 * 109.16301 * 297.10833 * 21 18 17 23 23 O 1.42909 * 109.41769 * 302.39570 * 22 21 18 24 24 C 1.42901 * 114.09485 * 61.15351 * 23 22 21 25 25 C 1.53087 * 109.41655 * 298.84581 * 24 23 22 26 26 C 1.39480 * 120.33526 * 0.28118 * 12 11 10 27 27 C 1.36375 * 120.16460 * 359.43796 * 26 12 11 28 28 H 0.96998 * 119.99028 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.08543 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.91478 * 179.97438 * 11 10 9 31 31 H 0.97004 * 120.00274 * 214.47286 * 13 12 11 32 32 H 0.96995 * 120.00476 * 0.02562 * 16 14 13 33 33 H 1.08999 * 109.47314 * 300.00349 * 17 16 14 34 34 H 1.09000 * 109.47001 * 60.00249 * 17 16 14 35 35 H 1.09003 * 109.47294 * 60.00167 * 19 18 17 36 36 H 1.09000 * 109.46867 * 179.97438 * 19 18 17 37 37 H 0.96702 * 113.99352 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.52427 * 57.01800 * 21 18 17 39 39 H 1.09004 * 109.51929 * 177.20512 * 21 18 17 40 40 H 1.09000 * 109.48044 * 182.41151 * 22 21 18 41 41 H 1.08998 * 109.48887 * 62.38132 * 22 21 18 42 42 H 1.09007 * 109.47555 * 178.86095 * 24 23 22 43 43 H 1.09000 * 109.48937 * 58.83480 * 24 23 22 44 44 H 1.09000 * 109.52298 * 297.69782 * 25 24 23 45 45 H 1.09008 * 109.52218 * 177.51809 * 25 24 23 46 46 H 1.08004 * 119.91616 * 179.69957 * 26 12 11 47 47 H 1.08001 * 120.08010 * 180.27717 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 -0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8843 2.3963 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2315 0.2713 9 6 1.3478 -2.4079 -0.3530 10 6 1.8186 -3.6452 0.1286 11 6 1.1756 -4.7970 -0.2176 12 6 0.0543 -4.7519 -1.0459 13 7 -0.5972 -5.9321 -1.3946 14 6 -0.6684 -6.9485 -0.5123 15 8 -0.2470 -6.8024 0.6187 16 7 -1.2068 -8.1269 -0.8840 17 6 -1.2846 -9.2315 0.0752 18 6 -1.9322 -10.4447 -0.5955 19 6 -1.0932 -10.8711 -1.8018 20 8 -1.0209 -9.7929 -2.7369 21 6 -3.3471 -10.0809 -1.0561 22 6 -4.1992 -9.7309 0.1666 23 8 -4.2085 -10.8369 1.0716 24 6 -2.9180 -11.1920 1.5722 25 6 -2.0145 -11.6007 0.4059 26 6 -0.4146 -3.5311 -1.5309 27 6 0.2145 -2.3705 -1.1887 28 1 -0.4848 0.8401 0.0004 29 1 2.6870 -3.6817 0.7696 30 1 1.5356 -5.7463 0.1504 31 1 -0.9999 -6.0227 -2.2724 32 1 -1.5427 -8.2436 -1.7864 33 1 -0.2808 -9.4942 0.4091 34 1 -1.8846 -8.9266 0.9326 35 1 -0.0881 -11.1332 -1.4709 36 1 -1.5553 -11.7357 -2.2784 37 1 -0.5026 -9.9930 -3.5284 38 1 -3.3026 -9.2228 -1.7268 39 1 -3.7898 -10.9296 -1.5777 40 1 -5.2187 -9.5127 -0.1512 41 1 -3.7788 -8.8573 0.6647 42 1 -3.0147 -12.0263 2.2670 43 1 -2.4806 -10.3376 2.0887 44 1 -2.4302 -12.4800 -0.0861 45 1 -1.0169 -11.8296 0.7808 46 1 -1.2807 -3.5045 -2.1757 47 1 -0.1524 -1.4256 -1.5614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159979365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:14 Heat of formation + Delta-G solvation = -101.482964 kcal Electronic energy + Delta-G solvation = -29062.830369 eV Core-core repulsion = 25017.401914 eV Total energy + Delta-G solvation = -4045.428455 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.09 seconds Orbital eigenvalues (eV) -40.74269 -39.42269 -37.58998 -37.12974 -35.11370 -34.25683 -33.25837 -32.62089 -31.40162 -29.49347 -28.84011 -27.81978 -26.28809 -24.50700 -23.96783 -22.93549 -21.58234 -20.75616 -19.98042 -19.20372 -18.01880 -17.40021 -17.16086 -16.63570 -16.36569 -16.22605 -15.69365 -15.30372 -15.10632 -14.94169 -14.58642 -14.40263 -13.86083 -13.82859 -13.43871 -13.26718 -13.15469 -12.72356 -12.61290 -12.54348 -12.02887 -11.93327 -11.73008 -11.64888 -11.26014 -11.23881 -11.08738 -10.98498 -10.89749 -10.66815 -10.57595 -10.29183 -9.95076 -9.71040 -9.51167 -9.38973 -9.10902 -8.82788 -8.61678 -7.45233 -6.86137 -6.65437 -4.21375 2.74096 3.10403 3.11718 3.17066 3.17357 3.26389 3.61329 3.73319 3.87415 3.98821 4.22201 4.35095 4.54456 4.67974 4.71766 4.77169 4.94309 4.97847 4.99723 5.05983 5.22926 5.30247 5.37063 5.41105 5.50614 5.57502 5.70179 5.77884 5.79402 5.82679 5.96025 6.28105 6.51445 6.86716 6.88157 6.92878 6.96783 7.12801 7.20095 7.27848 7.38749 7.56018 7.70276 8.00015 8.09135 8.15455 8.37041 8.68110 8.69587 8.96782 9.02267 9.29057 10.25910 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.002252 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.665718 B =12432.899794 C =12674.560771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.074 3.926 3 Si 0.907 3.093 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.275 1.275 7 C -0.459 4.459 8 H 0.077 0.923 9 C 0.102 3.898 10 C -0.214 4.214 11 C -0.078 4.078 12 C 0.019 3.981 13 N -0.668 5.668 14 C 0.691 3.309 15 O -0.587 6.587 16 N -0.739 5.739 17 C 0.152 3.848 18 C -0.073 4.073 19 C 0.091 3.909 20 O -0.569 6.569 21 C -0.138 4.138 22 C 0.055 3.945 23 O -0.383 6.383 24 C 0.057 3.943 25 C -0.141 4.141 26 C -0.118 4.118 27 C -0.152 4.152 28 H 0.279 0.721 29 H 0.093 0.907 30 H 0.101 0.899 31 H 0.390 0.610 32 H 0.404 0.596 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.382 0.618 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.058 0.942 42 H 0.096 0.904 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.334 -21.722 -5.618 23.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.489 4.489 8 H 0.095 0.905 9 C 0.100 3.900 10 C -0.234 4.234 11 C -0.098 4.098 12 C -0.074 4.074 13 N -0.314 5.314 14 C 0.392 3.608 15 O -0.465 6.465 16 N -0.402 5.402 17 C 0.026 3.974 18 C -0.074 4.074 19 C 0.013 3.987 20 O -0.375 6.375 21 C -0.176 4.176 22 C -0.022 4.022 23 O -0.301 6.301 24 C -0.020 4.020 25 C -0.179 4.179 26 C -0.138 4.138 27 C -0.172 4.172 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.119 0.881 31 H 0.223 0.777 32 H 0.244 0.756 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.231 0.769 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.076 0.924 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.097 0.903 45 H 0.098 0.902 46 H 0.107 0.893 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -6.680 -21.266 -4.080 22.661 hybrid contribution 0.556 0.472 -1.286 1.479 sum -6.123 -20.794 -5.366 22.331 Atomic orbital electron populations 1.69867 1.07505 1.28909 1.35880 1.25908 0.94732 1.01240 0.92447 0.86280 0.80980 0.81094 0.78452 1.18459 1.19804 1.20081 1.19553 0.97755 0.91142 1.40458 0.90465 1.17643 0.91460 0.92126 0.88812 1.20647 1.03695 0.92669 1.06364 1.20247 0.93770 0.97644 0.98150 1.16975 0.97274 0.83326 1.09842 1.42093 1.59139 1.14045 1.16081 1.16081 0.79518 0.80498 0.84718 1.90902 1.54069 1.82376 1.19105 1.45280 1.67391 1.11121 1.16401 1.21098 1.00133 0.84691 0.91438 1.20945 0.95799 0.95761 0.94854 1.22173 0.98574 0.88709 0.89245 1.86161 1.76793 1.40415 1.34177 1.22144 0.93866 1.02886 0.98672 1.22673 1.00826 0.89042 0.89625 1.87927 1.28505 1.51000 1.62708 1.22626 0.83840 1.00632 0.94904 1.22134 1.01419 0.97473 0.96888 1.20206 0.99288 0.91731 1.02606 1.20876 0.99288 0.96238 1.00766 0.91059 0.88838 0.88126 0.77734 0.75556 0.92100 0.91823 0.93207 0.93388 0.76894 0.89957 0.91020 0.88765 0.92411 0.88568 0.92376 0.90344 0.90168 0.89300 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.02 10.94 55.55 0.61 -20.41 16 2 C 0.07 1.89 5.15 -17.33 -0.09 1.80 16 3 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 5 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.46 -12.49 9.04 -37.85 -0.34 -12.84 16 8 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 9 C 0.10 2.82 5.57 -106.80 -0.59 2.22 16 10 C -0.21 -5.62 9.74 -39.26 -0.38 -6.00 16 11 C -0.08 -1.96 8.57 -39.79 -0.34 -2.30 16 12 C 0.02 0.44 6.27 -83.57 -0.52 -0.09 16 13 N -0.67 -12.59 5.31 -14.10 -0.07 -12.66 16 14 C 0.69 13.13 8.28 -86.91 -0.72 12.41 16 15 O -0.59 -13.78 14.07 5.30 0.07 -13.71 16 16 N -0.74 -10.14 4.61 -65.22 -0.30 -10.44 16 17 C 0.15 1.82 4.01 -4.04 -0.02 1.80 16 18 C -0.07 -0.60 0.51 -154.33 -0.08 -0.68 16 19 C 0.09 0.62 5.93 37.16 0.22 0.84 16 20 O -0.57 -4.08 9.77 -35.23 -0.34 -4.43 16 21 C -0.14 -1.16 4.61 -26.60 -0.12 -1.28 16 22 C 0.05 0.53 6.57 37.20 0.24 0.77 16 23 O -0.38 -3.98 10.77 -35.23 -0.38 -4.36 16 24 C 0.06 0.47 6.57 37.20 0.24 0.71 16 25 C -0.14 -0.98 4.92 -26.60 -0.13 -1.11 16 26 C -0.12 -2.79 9.89 -39.79 -0.39 -3.18 16 27 C -0.15 -4.00 8.63 -39.26 -0.34 -4.34 16 28 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.09 2.34 8.06 -52.49 -0.42 1.92 16 30 H 0.10 2.52 6.47 -52.49 -0.34 2.18 16 31 H 0.39 5.91 8.83 -40.82 -0.36 5.55 16 32 H 0.40 4.73 4.71 -40.82 -0.19 4.53 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.85 5.01 -51.93 -0.26 0.59 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.38 1.35 9.12 45.56 0.42 1.76 16 38 H 0.08 0.74 6.55 -51.93 -0.34 0.40 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.64 6.60 -51.93 -0.34 0.30 16 42 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 0.53 6.61 -51.93 -0.34 0.19 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 46 H 0.09 1.85 8.06 -52.48 -0.42 1.42 16 47 H 0.12 3.24 6.17 -52.49 -0.32 2.92 16 LS Contribution 368.16 15.07 5.55 5.55 Total: -1.00 -33.47 368.16 -9.13 -42.60 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -5.86 Total: 15.14 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.37 Total: -11.27 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.23 Total: -43.51 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.65 Total: -22.49 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.47 -9.13 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159979365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.882 kcal (2) G-P(sol) polarization free energy of solvation -33.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.09 seconds