Wall clock time and date at job start Tue Mar 31 2020 23:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30885 * 1 3 3 Si 1.86801 * 120.00302 * 2 1 4 4 H 1.48499 * 109.47189 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46959 * 299.99871 * 3 2 1 6 6 H 1.48495 * 109.46979 * 60.00295 * 3 2 1 7 7 C 1.39900 * 119.99696 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99631 * 196.82702 * 7 2 1 9 9 C 1.41153 * 119.99947 * 16.83504 * 7 2 1 10 10 C 1.40869 * 120.16052 * 205.35005 * 9 7 2 11 11 C 1.36376 * 119.82844 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16617 * 359.97438 * 11 10 9 13 13 N 1.39242 * 119.83166 * 180.02562 * 12 11 10 14 14 C 1.34779 * 119.99866 * 34.47284 * 13 12 11 15 15 O 1.21578 * 120.00145 * 5.15062 * 14 13 12 16 16 N 1.34780 * 119.99614 * 185.14112 * 14 13 12 17 17 C 1.46503 * 119.99524 * 180.02562 * 16 14 13 18 18 C 1.53004 * 109.47187 * 180.02562 * 17 16 14 19 19 C 1.53001 * 109.53969 * 59.82500 * 18 17 16 20 20 O 1.42908 * 109.47153 * 300.00026 * 19 18 17 21 21 C 1.53179 * 109.54261 * 299.56114 * 18 17 16 22 22 C 1.53085 * 109.16301 * 297.10833 * 21 18 17 23 23 O 1.42909 * 109.41769 * 302.39570 * 22 21 18 24 24 C 1.42901 * 114.09485 * 61.15351 * 23 22 21 25 25 C 1.53087 * 109.41655 * 298.84581 * 24 23 22 26 26 C 1.39480 * 120.33526 * 0.28118 * 12 11 10 27 27 C 1.36375 * 120.16460 * 359.43796 * 26 12 11 28 28 H 0.96998 * 119.99028 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.08543 * 359.97438 * 10 9 7 30 30 H 1.07997 * 119.91478 * 179.97438 * 11 10 9 31 31 H 0.97004 * 120.00274 * 214.47286 * 13 12 11 32 32 H 0.96995 * 120.00476 * 0.02562 * 16 14 13 33 33 H 1.08999 * 109.47314 * 300.00349 * 17 16 14 34 34 H 1.09000 * 109.47001 * 60.00249 * 17 16 14 35 35 H 1.09003 * 109.47294 * 60.00167 * 19 18 17 36 36 H 1.09000 * 109.46867 * 179.97438 * 19 18 17 37 37 H 0.96702 * 113.99352 * 179.97438 * 20 19 18 38 38 H 1.09004 * 109.52427 * 57.01800 * 21 18 17 39 39 H 1.09004 * 109.51929 * 177.20512 * 21 18 17 40 40 H 1.09000 * 109.48044 * 182.41151 * 22 21 18 41 41 H 1.08998 * 109.48887 * 62.38132 * 22 21 18 42 42 H 1.09007 * 109.47555 * 178.86095 * 24 23 22 43 43 H 1.09000 * 109.48937 * 58.83480 * 24 23 22 44 44 H 1.09000 * 109.52298 * 297.69782 * 25 24 23 45 45 H 1.09008 * 109.52218 * 177.51809 * 25 24 23 46 46 H 1.08004 * 119.91616 * 179.69957 * 26 12 11 47 47 H 1.08001 * 120.08010 * 180.27717 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 3.7029 1.3463 -0.0006 5 1 1.8842 2.3964 -1.2126 6 1 1.8843 2.3963 1.2125 7 6 2.0083 -1.2116 0.0005 8 1 3.0536 -1.2315 0.2713 9 6 1.3478 -2.4079 -0.3530 10 6 1.8186 -3.6452 0.1286 11 6 1.1756 -4.7970 -0.2176 12 6 0.0543 -4.7519 -1.0459 13 7 -0.5972 -5.9321 -1.3946 14 6 -0.6684 -6.9485 -0.5123 15 8 -0.2470 -6.8024 0.6187 16 7 -1.2068 -8.1269 -0.8840 17 6 -1.2846 -9.2315 0.0752 18 6 -1.9322 -10.4447 -0.5955 19 6 -1.0932 -10.8711 -1.8018 20 8 -1.0209 -9.7929 -2.7369 21 6 -3.3471 -10.0809 -1.0561 22 6 -4.1992 -9.7309 0.1666 23 8 -4.2085 -10.8369 1.0716 24 6 -2.9180 -11.1920 1.5722 25 6 -2.0145 -11.6007 0.4059 26 6 -0.4146 -3.5311 -1.5309 27 6 0.2145 -2.3705 -1.1887 28 1 -0.4848 0.8401 0.0004 29 1 2.6870 -3.6817 0.7696 30 1 1.5356 -5.7463 0.1504 31 1 -0.9999 -6.0227 -2.2724 32 1 -1.5427 -8.2436 -1.7864 33 1 -0.2808 -9.4942 0.4091 34 1 -1.8846 -8.9266 0.9326 35 1 -0.0881 -11.1332 -1.4709 36 1 -1.5553 -11.7357 -2.2784 37 1 -0.5026 -9.9930 -3.5284 38 1 -3.3026 -9.2228 -1.7268 39 1 -3.7898 -10.9296 -1.5777 40 1 -5.2187 -9.5127 -0.1512 41 1 -3.7788 -8.8573 0.6647 42 1 -3.0147 -12.0263 2.2670 43 1 -2.4806 -10.3376 2.0887 44 1 -2.4302 -12.4800 -0.0861 45 1 -1.0169 -11.8296 0.7808 46 1 -1.2807 -3.5045 -2.1757 47 1 -0.1524 -1.4256 -1.5614 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159979365.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:44:02 Heat of formation + Delta-G solvation = -125.905004 kcal Electronic energy + Delta-G solvation = -29063.889388 eV Core-core repulsion = 25017.401914 eV Total energy + Delta-G solvation = -4046.487474 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.92 seconds Orbital eigenvalues (eV) -41.71829 -40.79883 -39.15859 -38.05848 -36.26249 -35.76883 -34.81180 -34.02851 -32.08642 -31.45850 -30.71811 -28.54342 -27.50931 -26.17993 -24.67445 -23.60211 -23.38802 -22.61123 -21.56526 -20.16986 -19.33248 -19.06572 -18.14335 -18.03270 -17.24695 -17.04322 -16.95041 -16.66542 -16.23523 -16.09480 -15.70281 -15.64988 -15.34501 -14.99804 -14.80362 -14.52026 -14.13155 -14.04670 -13.95858 -13.68097 -13.64890 -13.26653 -13.19187 -12.87154 -12.77311 -12.61962 -12.45327 -12.28190 -11.95717 -11.78755 -11.62775 -11.43166 -11.24362 -11.18840 -11.00692 -10.81360 -10.66979 -10.44649 -9.90387 -9.44984 -8.78703 -8.56541 -6.24522 0.87474 1.15814 1.40154 1.48203 1.55851 1.86755 2.23257 2.27570 2.78596 2.92955 3.11563 3.42849 3.56674 3.74773 3.78875 3.94729 4.02846 4.18575 4.24194 4.33401 4.40908 4.51502 4.53520 4.57990 4.64085 4.67730 4.74267 4.80185 4.86961 4.93817 4.96722 5.11012 5.13110 5.14892 5.18154 5.23463 5.33436 5.47879 5.62551 5.68510 5.85397 6.06446 6.14656 6.22164 6.34398 6.41255 6.67985 6.92931 6.95461 7.02732 7.31915 7.76353 8.36275 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025761 B = 0.002252 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.665718 B =12432.899794 C =12674.560771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.033 3.967 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.261 1.261 6 H -0.268 1.268 7 C -0.496 4.496 8 H 0.073 0.927 9 C 0.072 3.928 10 C -0.231 4.231 11 C -0.088 4.088 12 C 0.032 3.968 13 N -0.659 5.659 14 C 0.687 3.313 15 O -0.634 6.634 16 N -0.712 5.712 17 C 0.149 3.851 18 C -0.067 4.067 19 C 0.093 3.907 20 O -0.587 6.587 21 C -0.132 4.132 22 C 0.052 3.948 23 O -0.397 6.397 24 C 0.049 3.951 25 C -0.135 4.135 26 C -0.115 4.115 27 C -0.169 4.169 28 H 0.288 0.712 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.411 0.589 32 H 0.417 0.583 33 H 0.051 0.949 34 H 0.047 0.953 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.400 0.600 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.034 0.966 42 H 0.114 0.886 43 H 0.041 0.959 44 H 0.097 0.903 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.062 -23.116 -7.259 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.183 1.183 5 H -0.185 1.185 6 H -0.192 1.192 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.070 3.930 10 C -0.251 4.251 11 C -0.109 4.109 12 C -0.062 4.062 13 N -0.307 5.307 14 C 0.388 3.612 15 O -0.516 6.516 16 N -0.375 5.375 17 C 0.024 3.976 18 C -0.068 4.068 19 C 0.015 3.985 20 O -0.396 6.396 21 C -0.169 4.169 22 C -0.024 4.024 23 O -0.316 6.316 24 C -0.027 4.027 25 C -0.173 4.173 26 C -0.135 4.135 27 C -0.189 4.189 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.116 0.884 31 H 0.248 0.752 32 H 0.261 0.739 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.122 0.878 41 H 0.052 0.948 42 H 0.132 0.868 43 H 0.059 0.941 44 H 0.116 0.884 45 H 0.110 0.890 46 H 0.141 0.859 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.441 -22.731 -5.787 24.608 hybrid contribution 0.699 0.743 -0.755 1.269 sum -6.742 -21.988 -6.542 23.911 Atomic orbital electron populations 1.69904 1.08935 1.30477 1.35978 1.26774 0.95555 1.04495 0.91284 0.85119 0.79286 0.76042 0.78978 1.18325 1.18503 1.19249 1.19779 0.97923 0.92368 1.42496 0.90842 1.17967 0.92524 0.92737 0.89801 1.20769 1.04253 0.93095 1.07032 1.20327 0.94618 0.97040 0.98874 1.17008 0.96323 0.84847 1.08025 1.41870 1.58837 1.12790 1.17190 1.16307 0.79416 0.81525 0.83977 1.90877 1.56156 1.83311 1.21231 1.45148 1.65364 1.09660 1.17321 1.21250 0.99732 0.85459 0.91137 1.20945 0.95687 0.94349 0.95792 1.22167 0.98515 0.89187 0.88616 1.86050 1.77395 1.41036 1.35161 1.22096 0.93640 1.03312 0.97888 1.22698 1.01573 0.88199 0.89941 1.87906 1.29721 1.50986 1.63003 1.22787 0.83406 1.00640 0.95859 1.22120 1.01856 0.97292 0.96001 1.20454 0.99747 0.90885 1.02459 1.20896 0.99691 0.96894 1.01389 0.90103 0.88898 0.88420 0.75233 0.73934 0.93091 0.93518 0.93011 0.90966 0.74831 0.90413 0.89371 0.87838 0.94754 0.86780 0.94073 0.88432 0.88974 0.85946 0.87066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.20 10.94 21.82 0.24 -43.96 16 2 C 0.03 1.72 5.15 85.24 0.44 2.16 16 3 Si 0.99 39.10 29.59 68.60 2.03 41.13 16 4 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 5 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 6 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 7 C -0.50 -27.86 9.04 23.39 0.21 -27.65 16 8 H 0.07 4.01 7.90 -2.91 -0.02 3.99 16 9 C 0.07 4.12 5.57 -21.28 -0.12 4.00 16 10 C -0.23 -12.65 9.74 22.48 0.22 -12.43 16 11 C -0.09 -4.53 8.57 22.13 0.19 -4.34 16 12 C 0.03 1.49 6.27 38.56 0.24 1.73 16 13 N -0.66 -24.06 5.31 -316.78 -1.68 -25.74 16 14 C 0.69 25.80 8.28 179.05 1.48 27.29 16 15 O -0.63 -30.30 14.07 -3.96 -0.06 -30.36 16 16 N -0.71 -18.75 4.61 -478.53 -2.20 -20.95 16 17 C 0.15 3.48 4.01 86.38 0.35 3.83 16 18 C -0.07 -0.97 0.51 -52.06 -0.03 -1.00 16 19 C 0.09 0.96 5.93 71.98 0.43 1.39 16 20 O -0.59 -6.64 9.77 -148.98 -1.46 -8.09 16 21 C -0.13 -1.93 4.61 30.68 0.14 -1.78 16 22 C 0.05 0.96 6.57 72.01 0.47 1.43 16 23 O -0.40 -7.83 10.77 -148.98 -1.60 -9.44 16 24 C 0.05 0.76 6.57 72.01 0.47 1.24 16 25 C -0.13 -1.54 4.92 30.68 0.15 -1.39 16 26 C -0.12 -5.39 9.89 22.13 0.22 -5.17 16 27 C -0.17 -9.07 8.63 22.48 0.19 -8.87 16 28 H 0.29 13.81 8.30 -92.71 -0.77 13.05 16 29 H 0.09 4.90 8.06 -2.91 -0.02 4.87 16 30 H 0.10 5.03 6.47 -2.91 -0.02 5.01 16 31 H 0.41 11.50 8.83 -92.71 -0.82 10.68 16 32 H 0.42 8.88 4.71 -92.71 -0.44 8.44 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.28 5.01 -2.39 -0.01 1.26 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.40 1.53 9.12 -74.06 -0.68 0.86 16 38 H 0.08 1.21 6.55 -2.38 -0.02 1.20 16 39 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.03 0.78 6.60 -2.39 -0.02 0.76 16 42 H 0.11 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.04 0.77 6.61 -2.39 -0.02 0.75 16 44 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 45 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 46 H 0.12 4.83 8.06 -2.91 -0.02 4.81 16 47 H 0.11 6.12 6.17 -2.91 -0.02 6.10 16 Total: -1.00 -74.81 368.16 -0.57 -75.38 By element: Atomic # 1 Polarization: 42.51 SS G_CDS: -0.90 Total: 41.61 kcal Atomic # 6 Polarization: -24.63 SS G_CDS: 5.06 Total: -19.56 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.65 Total: -90.66 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -3.12 Total: -47.89 kcal Atomic # 14 Polarization: 39.10 SS G_CDS: 2.03 Total: 41.13 kcal Total: -74.81 -0.57 -75.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159979365.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.528 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.92 seconds