Wall clock time and date at job start Wed Apr 1 2020 00:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47122 * 269.99651 * 3 2 1 5 5 H 1.48499 * 109.47058 * 29.99828 * 3 2 1 6 6 H 1.48502 * 109.46977 * 150.00134 * 3 2 1 7 7 C 1.38656 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00311 * 0.02562 * 7 2 1 9 9 O 1.34829 * 119.99529 * 179.97438 * 7 2 1 10 10 C 1.35747 * 116.99974 * 185.06004 * 9 7 2 11 11 C 1.38882 * 120.06668 * 354.46449 * 10 9 7 12 12 C 1.38102 * 119.93030 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06990 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.93313 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47342 * 89.99536 * 14 13 12 16 16 C 1.34779 * 120.00046 * 179.97438 * 15 14 13 17 17 O 1.21589 * 119.99459 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00364 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00347 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47377 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.52250 * 305.12870 * 20 19 18 22 22 C 1.53177 * 109.52227 * 184.99623 * 20 19 18 23 23 C 1.53182 * 109.03438 * 183.11561 * 22 20 19 24 24 C 1.53095 * 109.16317 * 56.98199 * 23 22 20 25 25 O 1.42902 * 109.41390 * 302.39095 * 24 23 22 26 26 C 1.42904 * 114.09947 * 61.16122 * 25 24 23 27 27 C 1.38308 * 120.13585 * 0.27437 * 13 12 11 28 28 C 1.38098 * 120.07019 * 359.49248 * 27 13 12 29 29 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03934 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.96837 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.47160 * 329.99418 * 14 13 12 33 33 H 1.09001 * 109.47103 * 209.99999 * 14 13 12 34 34 H 0.96997 * 120.00451 * 0.02562 * 15 14 13 35 35 H 0.97005 * 119.99728 * 0.02562 * 18 16 15 36 36 H 1.09003 * 109.47314 * 59.99820 * 19 18 16 37 37 H 1.09003 * 109.47178 * 299.99749 * 19 18 16 38 38 H 1.08998 * 109.54702 * 302.98389 * 22 20 19 39 39 H 1.09004 * 109.53881 * 63.16121 * 22 20 19 40 40 H 1.08993 * 109.51901 * 176.88968 * 23 22 20 41 41 H 1.09006 * 109.52090 * 297.01669 * 23 22 20 42 42 H 1.08997 * 109.47728 * 62.37601 * 24 23 22 43 43 H 1.09001 * 109.47898 * 182.39803 * 24 23 22 44 44 H 1.09001 * 109.48191 * 178.86072 * 26 25 24 45 45 H 1.09002 * 109.48471 * 58.82135 * 26 25 24 46 46 H 1.07998 * 119.96286 * 179.72485 * 27 13 12 47 47 H 1.07999 * 120.03731 * 180.25225 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4056 -0.1061 11 6 3.2234 -3.5744 -0.0921 12 6 3.8533 -4.7986 -0.2008 13 6 5.2294 -4.8615 -0.3240 14 6 5.9134 -6.1990 -0.4429 15 7 6.0147 -6.5717 -1.8560 16 6 6.5952 -7.7367 -2.2057 17 8 7.0344 -8.4785 -1.3482 18 7 6.6889 -8.0795 -3.5057 19 6 7.3194 -9.3461 -3.8858 20 6 7.2956 -9.4909 -5.4088 21 1 6.2718 -9.3884 -5.7686 22 6 7.8406 -10.8677 -5.8007 23 6 7.8849 -10.9712 -7.3283 24 6 8.7384 -9.8287 -7.8849 25 8 8.1946 -8.5780 -7.4579 26 6 8.1720 -8.4054 -6.0395 27 6 5.9795 -3.6995 -0.3330 28 6 5.3552 -2.4720 -0.2296 29 1 -0.4850 0.8400 -0.0004 30 1 2.1487 -3.5261 0.0028 31 1 3.2706 -5.7079 -0.1904 32 1 5.3339 -6.9522 0.0909 33 1 6.9123 -6.1359 -0.0112 34 1 5.6647 -5.9798 -2.5401 35 1 6.3388 -7.4875 -4.1898 36 1 6.7729 -10.1740 -3.4340 37 1 8.3515 -9.3577 -3.5354 38 1 8.8459 -10.9903 -5.3976 39 1 7.1898 -11.6449 -5.3999 40 1 8.3230 -11.9268 -7.6161 41 1 6.8732 -10.8993 -7.7277 42 1 9.7598 -9.9255 -7.5171 43 1 8.7385 -9.8723 -8.9741 44 1 7.7639 -7.4237 -5.7993 45 1 9.1860 -8.4836 -5.6475 46 1 7.0542 -3.7520 -0.4249 47 1 5.9411 -1.5649 -0.2408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170799576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:15 Heat of formation + Delta-G solvation = -90.782589 kcal Electronic energy + Delta-G solvation = -27312.424019 eV Core-core repulsion = 23267.459567 eV Total energy + Delta-G solvation = -4044.964452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 29.99 seconds Orbital eigenvalues (eV) -40.34546 -39.64331 -39.19719 -37.12387 -35.84313 -34.38905 -33.74217 -32.48694 -31.70656 -30.39159 -29.92394 -26.80494 -25.74668 -25.53024 -24.37713 -22.53200 -22.18402 -21.06631 -20.60893 -20.53505 -18.51932 -17.98030 -17.38524 -16.78686 -16.64613 -16.35310 -15.70633 -15.25635 -14.99747 -14.87202 -14.83851 -14.58132 -14.16596 -14.00489 -13.89369 -13.72385 -13.38122 -13.36565 -13.13457 -12.82590 -12.71731 -12.38295 -12.27493 -11.98664 -11.70883 -11.54154 -11.48138 -11.24458 -10.96137 -10.84834 -10.79245 -10.77672 -10.25087 -10.22480 -9.93559 -9.49280 -9.36831 -8.96000 -8.81513 -8.38446 -7.49150 -6.50608 -4.17588 1.90850 2.02226 2.77044 3.16529 3.19696 3.20231 3.34346 3.40481 4.12074 4.16108 4.20293 4.25639 4.34913 4.43094 4.50125 4.67307 4.74222 4.82099 4.94256 5.01345 5.11455 5.14254 5.16989 5.22120 5.27845 5.36670 5.44645 5.51255 5.53646 5.56332 5.62287 5.73989 5.80806 5.87519 6.02541 6.24676 6.28335 6.44891 6.54136 6.67325 6.72698 6.81168 6.95400 7.12437 7.18711 7.49366 7.69986 7.93497 7.98421 8.57409 8.83925 9.44628 10.56510 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.001791 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.029421 B =15627.101206 C =16345.757345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.167 3.833 11 C -0.225 4.225 12 C -0.052 4.052 13 C -0.206 4.206 14 C 0.197 3.803 15 N -0.738 5.738 16 C 0.701 3.299 17 O -0.597 6.597 18 N -0.752 5.752 19 C 0.147 3.853 20 C -0.136 4.136 21 H 0.088 0.912 22 C -0.115 4.115 23 C -0.156 4.156 24 C 0.058 3.942 25 O -0.381 6.381 26 C 0.065 3.935 27 C -0.055 4.055 28 C -0.196 4.196 29 H 0.281 0.719 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.396 0.604 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.114 0.886 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.773 -18.939 -13.114 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.070 4.070 13 C -0.207 4.207 14 C 0.074 3.926 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.475 6.475 18 N -0.408 5.408 19 C 0.023 3.977 20 C -0.155 4.155 21 H 0.106 0.894 22 C -0.153 4.153 23 C -0.193 4.193 24 C -0.019 4.019 25 O -0.300 6.300 26 C -0.012 4.012 27 C -0.074 4.074 28 C -0.215 4.215 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.112 0.888 45 H 0.072 0.928 46 H 0.132 0.868 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 15.981 -19.114 -12.382 27.822 hybrid contribution -0.255 1.008 -0.428 1.125 sum 15.726 -18.106 -12.810 27.189 Atomic orbital electron populations 1.69644 1.05596 1.28670 1.47309 1.24494 0.95052 0.98933 0.95487 0.86171 0.80341 0.81321 0.79024 1.19811 1.20685 1.18323 1.20786 0.76761 0.96721 1.52425 0.87496 1.83574 1.22765 1.25838 1.79533 1.19187 0.91747 0.85499 0.92217 1.21285 1.01249 0.91769 1.10066 1.20710 0.93349 0.96839 0.96136 1.19296 0.93793 0.93553 1.14073 1.19842 0.99792 0.93069 0.79929 1.45481 1.63572 1.20646 1.09596 1.16000 0.79169 0.82072 0.82632 1.90914 1.54583 1.52885 1.49156 1.45154 1.65809 1.23584 1.06295 1.21114 0.98317 0.85579 0.92734 1.22076 1.01726 0.96779 0.94923 0.89413 1.21556 1.01915 0.96050 0.95778 1.22187 1.01812 0.99399 0.95932 1.22608 0.95875 0.83503 0.99923 1.87967 1.83903 1.36346 1.21747 1.22659 0.98949 0.98646 0.80937 1.20544 0.98445 0.91193 0.97247 1.20216 0.91946 0.97914 1.11405 0.90908 0.84799 0.87086 0.91632 0.91640 0.76850 0.76999 0.91284 0.91514 0.91319 0.90864 0.90622 0.90866 0.93126 0.88846 0.88766 0.92782 0.86754 0.86373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.63 13.96 55.48 0.77 -23.85 16 2 C 0.06 1.75 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.06 28.62 -169.99 -4.86 16.20 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.67 9.95 30.89 0.31 -10.36 16 8 H 0.11 2.97 5.44 -52.49 -0.29 2.68 16 9 O -0.21 -5.40 8.59 0.06 0.00 -5.40 16 10 C 0.17 3.64 6.65 -39.10 -0.26 3.38 16 11 C -0.22 -4.55 9.17 -39.39 -0.36 -4.91 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.12 5.25 -104.57 -0.55 -3.67 16 14 C 0.20 2.65 5.80 -5.20 -0.03 2.62 16 15 N -0.74 -8.83 5.55 -66.42 -0.37 -9.20 16 16 C 0.70 9.04 8.57 -86.92 -0.74 8.29 16 17 O -0.60 -10.07 16.34 5.29 0.09 -9.99 16 18 N -0.75 -6.82 5.31 -65.22 -0.35 -7.17 16 19 C 0.15 1.18 5.07 -4.04 -0.02 1.16 16 20 C -0.14 -0.83 2.42 -90.47 -0.22 -1.05 16 21 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 22 C -0.11 -0.60 5.31 -26.55 -0.14 -0.74 16 23 C -0.16 -0.76 6.14 -26.59 -0.16 -0.92 16 24 C 0.06 0.33 6.84 37.21 0.25 0.59 16 25 O -0.38 -3.17 10.77 -35.23 -0.38 -3.55 16 26 C 0.06 0.44 5.97 37.21 0.22 0.66 16 27 C -0.06 -0.86 9.69 -39.61 -0.38 -1.25 16 28 C -0.20 -3.61 9.99 -39.39 -0.39 -4.01 16 29 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.88 5.64 -52.49 -0.30 2.59 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 34 H 0.40 4.12 8.48 -40.82 -0.35 3.78 16 35 H 0.40 2.71 7.70 -40.82 -0.31 2.39 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.60 7.27 -51.93 -0.38 0.22 16 45 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 47 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 387.06 15.07 5.83 5.83 Total: -1.00 -31.55 387.06 -9.32 -40.87 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.09 Total: 6.06 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -2.96 Total: -9.80 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.06 Total: -40.22 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.29 Total: -18.94 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.55 -9.32 -40.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170799576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.916 kcal (2) G-P(sol) polarization free energy of solvation -31.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 29.99 seconds