Wall clock time and date at job start Wed Apr 1 2020 00:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86800 * 119.99749 * 2 1 4 4 H 1.48503 * 109.47122 * 269.99651 * 3 2 1 5 5 H 1.48499 * 109.47058 * 29.99828 * 3 2 1 6 6 H 1.48502 * 109.46977 * 150.00134 * 3 2 1 7 7 C 1.38656 * 119.99770 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00311 * 0.02562 * 7 2 1 9 9 O 1.34829 * 119.99529 * 179.97438 * 7 2 1 10 10 C 1.35747 * 116.99974 * 185.06004 * 9 7 2 11 11 C 1.38882 * 120.06668 * 354.46449 * 10 9 7 12 12 C 1.38102 * 119.93030 * 179.97438 * 11 10 9 13 13 C 1.38303 * 120.06990 * 359.97438 * 12 11 10 14 14 C 1.50697 * 119.93313 * 180.02562 * 13 12 11 15 15 N 1.46497 * 109.47342 * 89.99536 * 14 13 12 16 16 C 1.34779 * 120.00046 * 179.97438 * 15 14 13 17 17 O 1.21589 * 119.99459 * 0.02562 * 16 15 14 18 18 N 1.34769 * 120.00364 * 180.02562 * 16 15 14 19 19 C 1.46498 * 120.00347 * 180.02562 * 18 16 15 20 20 C 1.53005 * 109.47377 * 179.97438 * 19 18 16 21 21 H 1.09002 * 109.52250 * 305.12870 * 20 19 18 22 22 C 1.53177 * 109.52227 * 184.99623 * 20 19 18 23 23 C 1.53182 * 109.03438 * 183.11561 * 22 20 19 24 24 C 1.53095 * 109.16317 * 56.98199 * 23 22 20 25 25 O 1.42902 * 109.41390 * 302.39095 * 24 23 22 26 26 C 1.42904 * 114.09947 * 61.16122 * 25 24 23 27 27 C 1.38308 * 120.13585 * 0.27437 * 13 12 11 28 28 C 1.38098 * 120.07019 * 359.49248 * 27 13 12 29 29 H 0.96997 * 119.99888 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.03934 * 0.02562 * 11 10 9 31 31 H 1.08001 * 119.96837 * 180.02562 * 12 11 10 32 32 H 1.08998 * 109.47160 * 329.99418 * 14 13 12 33 33 H 1.09001 * 109.47103 * 209.99999 * 14 13 12 34 34 H 0.96997 * 120.00451 * 0.02562 * 15 14 13 35 35 H 0.97005 * 119.99728 * 0.02562 * 18 16 15 36 36 H 1.09003 * 109.47314 * 59.99820 * 19 18 16 37 37 H 1.09003 * 109.47178 * 299.99749 * 19 18 16 38 38 H 1.08998 * 109.54702 * 302.98389 * 22 20 19 39 39 H 1.09004 * 109.53881 * 63.16121 * 22 20 19 40 40 H 1.08993 * 109.51901 * 176.88968 * 23 22 20 41 41 H 1.09006 * 109.52090 * 297.01669 * 23 22 20 42 42 H 1.08997 * 109.47728 * 62.37601 * 24 23 22 43 43 H 1.09001 * 109.47898 * 182.39803 * 24 23 22 44 44 H 1.09001 * 109.48191 * 178.86072 * 26 25 24 45 45 H 1.09002 * 109.48471 * 58.82135 * 26 25 24 46 46 H 1.07998 * 119.96286 * 179.72485 * 27 13 12 47 47 H 1.07999 * 120.03731 * 180.25225 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7000 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3571 -1.2008 0.0000 10 6 3.9734 -2.4056 -0.1061 11 6 3.2234 -3.5744 -0.0921 12 6 3.8533 -4.7986 -0.2008 13 6 5.2294 -4.8615 -0.3240 14 6 5.9134 -6.1990 -0.4429 15 7 6.0147 -6.5717 -1.8560 16 6 6.5952 -7.7367 -2.2057 17 8 7.0344 -8.4785 -1.3482 18 7 6.6889 -8.0795 -3.5057 19 6 7.3194 -9.3461 -3.8858 20 6 7.2956 -9.4909 -5.4088 21 1 6.2718 -9.3884 -5.7686 22 6 7.8406 -10.8677 -5.8007 23 6 7.8849 -10.9712 -7.3283 24 6 8.7384 -9.8287 -7.8849 25 8 8.1946 -8.5780 -7.4579 26 6 8.1720 -8.4054 -6.0395 27 6 5.9795 -3.6995 -0.3330 28 6 5.3552 -2.4720 -0.2296 29 1 -0.4850 0.8400 -0.0004 30 1 2.1487 -3.5261 0.0028 31 1 3.2706 -5.7079 -0.1904 32 1 5.3339 -6.9522 0.0909 33 1 6.9123 -6.1359 -0.0112 34 1 5.6647 -5.9798 -2.5401 35 1 6.3388 -7.4875 -4.1898 36 1 6.7729 -10.1740 -3.4340 37 1 8.3515 -9.3577 -3.5354 38 1 8.8459 -10.9903 -5.3976 39 1 7.1898 -11.6449 -5.3999 40 1 8.3230 -11.9268 -7.6161 41 1 6.8732 -10.8993 -7.7277 42 1 9.7598 -9.9255 -7.5171 43 1 8.7385 -9.8723 -8.9741 44 1 7.7639 -7.4237 -5.7993 45 1 9.1860 -8.4836 -5.6475 46 1 7.0542 -3.7520 -0.4249 47 1 5.9411 -1.5649 -0.2408 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170799576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:05 Heat of formation + Delta-G solvation = -112.249165 kcal Electronic energy + Delta-G solvation = -27313.354879 eV Core-core repulsion = 23267.459567 eV Total energy + Delta-G solvation = -4045.895312 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 14.19 seconds Orbital eigenvalues (eV) -41.26404 -40.85267 -40.21224 -38.65061 -36.61908 -35.58891 -34.47246 -34.30976 -32.39739 -31.86083 -31.19598 -27.95905 -27.08553 -26.02385 -25.68660 -23.71381 -23.11648 -22.08982 -21.92561 -21.10387 -19.86402 -19.44124 -19.07826 -17.55124 -17.33503 -16.96684 -16.79251 -16.47168 -16.21636 -15.83936 -15.75557 -15.67587 -15.53182 -15.42659 -15.13309 -14.70931 -14.57288 -14.31100 -14.25264 -14.06872 -13.88211 -13.58319 -13.31797 -13.10117 -12.89485 -12.57781 -12.46867 -12.31293 -12.17434 -12.03088 -11.93631 -11.73860 -11.35731 -11.30263 -11.24923 -10.90941 -10.46064 -10.33291 -9.84269 -9.72664 -9.10331 -8.50794 -6.23815 0.47641 0.54983 1.32608 1.35675 1.52389 1.82129 2.18176 2.27594 2.74988 2.92743 3.02656 3.12740 3.43175 3.70371 3.76279 3.84915 3.86360 4.02171 4.02492 4.14572 4.21860 4.33892 4.45549 4.50463 4.54815 4.58738 4.68829 4.70785 4.76342 4.81659 4.82600 4.94829 4.96632 5.02676 5.09879 5.19484 5.22644 5.33793 5.36837 5.47446 5.52187 5.54484 5.71472 5.79044 5.88394 6.01031 6.19635 6.25259 6.83323 7.09464 7.56330 7.59562 8.60396 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018260 B = 0.001791 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.029421 B =15627.101206 C =16345.757345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.129 3.871 11 C -0.239 4.239 12 C -0.049 4.049 13 C -0.172 4.172 14 C 0.202 3.798 15 N -0.731 5.731 16 C 0.700 3.300 17 O -0.637 6.637 18 N -0.737 5.737 19 C 0.150 3.850 20 C -0.123 4.123 21 H 0.087 0.913 22 C -0.116 4.116 23 C -0.151 4.151 24 C 0.050 3.950 25 O -0.404 6.404 26 C 0.063 3.937 27 C -0.044 4.044 28 C -0.192 4.192 29 H 0.285 0.715 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.409 0.591 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.056 0.944 46 H 0.154 0.846 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.611 -20.256 -14.185 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.100 0.900 9 O -0.149 6.149 10 C 0.079 3.921 11 C -0.258 4.258 12 C -0.068 4.068 13 C -0.174 4.174 14 C 0.079 3.921 15 N -0.387 5.387 16 C 0.400 3.600 17 O -0.518 6.518 18 N -0.393 5.393 19 C 0.026 3.974 20 C -0.143 4.143 21 H 0.105 0.895 22 C -0.154 4.154 23 C -0.189 4.189 24 C -0.026 4.026 25 O -0.323 6.323 26 C -0.013 4.013 27 C -0.062 4.062 28 C -0.211 4.211 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.243 0.757 35 H 0.245 0.755 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.120 0.880 44 H 0.115 0.885 45 H 0.074 0.926 46 H 0.172 0.828 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 18.841 -20.461 -13.505 30.920 hybrid contribution -0.908 1.042 -0.158 1.391 sum 17.933 -19.419 -13.663 29.755 Atomic orbital electron populations 1.69730 1.06925 1.29639 1.49864 1.25294 0.95878 1.02210 0.95479 0.85215 0.78806 0.77389 0.79305 1.18995 1.19404 1.18627 1.20706 0.78032 0.96146 1.52690 0.89975 1.83522 1.21297 1.27542 1.82562 1.19748 0.93284 0.85032 0.94005 1.21270 1.00307 0.93065 1.11169 1.20920 0.94405 0.96181 0.95291 1.19540 0.92980 0.94638 1.10207 1.19733 0.99935 0.91556 0.80922 1.45228 1.63520 1.20738 1.09193 1.16099 0.78872 0.81739 0.83271 1.90895 1.56322 1.54065 1.50566 1.45055 1.64923 1.24006 1.05357 1.21148 0.97716 0.84693 0.93880 1.21957 1.01668 0.97350 0.93287 0.89489 1.21588 1.02215 0.95449 0.96157 1.22161 1.01490 0.99815 0.95445 1.22789 0.96279 0.82916 1.00592 1.87936 1.84255 1.37695 1.22380 1.22700 0.99169 0.98917 0.80561 1.20953 1.00361 0.89814 0.95075 1.20523 0.90459 0.99835 1.10284 0.90558 0.87307 0.84905 0.91725 0.90762 0.75667 0.75464 0.92032 0.91988 0.90896 0.90409 0.89076 0.91384 0.92476 0.88012 0.88549 0.92620 0.82823 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 13.96 21.61 0.30 -53.81 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 44.40 28.62 68.60 1.96 46.37 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.40 -22.92 9.95 67.92 0.68 -22.25 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -12.68 8.59 -22.70 -0.19 -12.88 16 10 C 0.13 5.69 6.65 22.58 0.15 5.84 16 11 C -0.24 -9.87 9.17 22.39 0.21 -9.67 16 12 C -0.05 -1.57 9.69 22.25 0.22 -1.36 16 13 C -0.17 -4.65 5.25 -19.83 -0.10 -4.75 16 14 C 0.20 4.70 5.80 85.63 0.50 5.20 16 15 N -0.73 -15.04 5.55 -482.31 -2.68 -17.72 16 16 C 0.70 16.22 8.57 179.06 1.53 17.75 16 17 O -0.64 -20.18 16.34 -4.00 -0.07 -20.24 16 18 N -0.74 -11.60 5.31 -478.53 -2.54 -14.14 16 19 C 0.15 2.12 5.07 86.38 0.44 2.56 16 20 C -0.12 -1.28 2.42 -10.70 -0.03 -1.30 16 21 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 22 C -0.12 -0.98 5.31 30.71 0.16 -0.81 16 23 C -0.15 -1.16 6.14 30.69 0.19 -0.98 16 24 C 0.05 0.49 6.84 72.01 0.49 0.98 16 25 O -0.40 -6.08 10.77 -148.98 -1.60 -7.68 16 26 C 0.06 0.74 5.97 72.02 0.43 1.17 16 27 C -0.04 -1.19 9.69 22.25 0.22 -0.98 16 28 C -0.19 -6.71 9.99 22.39 0.22 -6.49 16 29 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 30 H 0.11 5.03 5.64 -2.91 -0.02 5.01 16 31 H 0.13 3.65 8.06 -2.91 -0.02 3.62 16 32 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 33 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 34 H 0.41 6.96 8.48 -92.71 -0.79 6.17 16 35 H 0.41 4.46 7.70 -92.70 -0.71 3.75 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 40 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 41 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 44 H 0.10 1.03 7.27 -2.39 -0.02 1.01 16 45 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 47 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -71.17 387.06 0.44 -70.73 By element: Atomic # 1 Polarization: 23.91 SS G_CDS: -0.50 Total: 23.41 kcal Atomic # 6 Polarization: -19.80 SS G_CDS: 5.76 Total: -14.04 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -4.92 Total: -85.67 kcal Atomic # 8 Polarization: -38.94 SS G_CDS: -1.86 Total: -40.80 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.96 Total: 46.37 kcal Total: -71.17 0.44 -70.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170799576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.517 kcal (2) G-P(sol) polarization free energy of solvation -71.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 14.19 seconds