Wall clock time and date at job start Wed Apr 1 2020 00:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48499 * 109.46966 * 270.00250 * 3 2 1 5 5 H 1.48506 * 109.47159 * 29.99796 * 3 2 1 6 6 H 1.48496 * 109.47461 * 149.99757 * 3 2 1 7 7 C 1.38650 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99692 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00295 * 180.02562 * 7 2 1 10 10 C 1.35756 * 116.99743 * 185.06073 * 9 7 2 11 11 C 1.38879 * 120.07225 * 354.45684 * 10 9 7 12 12 C 1.38093 * 119.93279 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.06787 * 0.02616 * 12 11 10 14 14 C 1.50703 * 119.93026 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47209 * 90.00042 * 14 13 12 16 16 C 1.34778 * 120.00037 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99810 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99870 * 179.72365 * 16 15 14 19 19 C 1.46505 * 119.99782 * 180.27665 * 18 16 15 20 20 C 1.53006 * 109.47068 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.51620 * 55.13001 * 20 19 18 22 22 C 1.53179 * 109.51894 * 175.31527 * 20 19 18 23 23 C 1.53184 * 109.03106 * 176.89176 * 22 20 19 24 24 C 1.53100 * 109.15895 * 303.01597 * 23 22 20 25 25 O 1.42895 * 109.41570 * 57.61508 * 24 23 22 26 26 C 1.42909 * 114.09545 * 298.83745 * 25 24 23 27 27 C 1.38300 * 120.14117 * 0.25035 * 13 12 11 28 28 C 1.38098 * 120.06481 * 359.45182 * 27 13 12 29 29 H 0.97001 * 120.00189 * 359.97438 * 1 2 3 30 30 H 1.08011 * 120.02968 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.96683 * 180.02562 * 12 11 10 32 32 H 1.09003 * 109.47097 * 329.99495 * 14 13 12 33 33 H 1.09008 * 109.46877 * 210.00340 * 14 13 12 34 34 H 0.97000 * 119.99802 * 359.97438 * 15 14 13 35 35 H 0.97000 * 120.00503 * 0.27473 * 18 16 15 36 36 H 1.08998 * 109.47192 * 300.00074 * 19 18 16 37 37 H 1.09004 * 109.46941 * 60.00237 * 19 18 16 38 38 H 1.08997 * 109.54385 * 296.75198 * 22 20 19 39 39 H 1.08990 * 109.54507 * 57.02256 * 22 20 19 40 40 H 1.09005 * 109.51625 * 183.11780 * 23 22 20 41 41 H 1.08993 * 109.52515 * 62.91951 * 23 22 20 42 42 H 1.09000 * 109.47886 * 297.62677 * 24 23 22 43 43 H 1.08996 * 109.47349 * 177.59792 * 24 23 22 44 44 H 1.08997 * 109.48109 * 301.17924 * 26 25 24 45 45 H 1.08999 * 109.48748 * 181.14683 * 26 25 24 46 46 H 1.08004 * 119.96574 * 179.70289 * 27 13 12 47 47 H 1.07999 * 120.03549 * 180.27127 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9735 -2.4055 -0.1051 11 6 3.2236 -3.5744 -0.0921 12 6 3.8536 -4.7985 -0.1998 13 6 5.2299 -4.8613 -0.3200 14 6 5.9143 -6.1989 -0.4367 15 7 6.0188 -6.5723 -1.8494 16 6 6.6001 -7.7375 -2.1972 17 8 7.0382 -8.4785 -1.3385 18 7 6.6912 -8.0836 -3.4965 19 6 7.3176 -9.3530 -3.8742 20 6 7.2916 -9.5014 -5.3968 21 1 7.7640 -8.6328 -5.8555 22 6 8.0489 -10.7703 -5.8004 23 6 7.9498 -10.9497 -7.3185 24 6 6.4741 -11.0001 -7.7232 25 8 5.8219 -9.8043 -7.2912 26 6 5.8415 -9.6078 -5.8758 27 6 5.9801 -3.6994 -0.3275 28 6 5.3554 -2.4719 -0.2264 29 1 -0.4850 0.8400 0.0004 30 1 2.1487 -3.5259 0.0021 31 1 3.2709 -5.7078 -0.1902 32 1 5.3336 -6.9518 0.0963 33 1 6.9123 -6.1355 -0.0028 34 1 5.6696 -5.9810 -2.5345 35 1 6.3420 -7.4924 -4.1817 36 1 8.3500 -9.3667 -3.5250 37 1 6.7692 -10.1782 -3.4197 38 1 9.0958 -10.6775 -5.5118 39 1 7.6069 -11.6328 -5.3017 40 1 8.4389 -11.8798 -7.6080 41 1 8.4357 -10.1109 -7.8168 42 1 5.9985 -11.8627 -7.2564 43 1 6.3973 -11.0848 -8.8072 44 1 5.3575 -10.4521 -5.3849 45 1 5.3087 -8.6895 -5.6288 46 1 7.0551 -3.7520 -0.4167 47 1 5.9413 -1.5647 -0.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170799579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:29 Heat of formation + Delta-G solvation = -90.744107 kcal Electronic energy + Delta-G solvation = -27320.680744 eV Core-core repulsion = 23275.717961 eV Total energy + Delta-G solvation = -4044.962783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.34411 -39.64053 -39.19639 -37.12345 -35.84094 -34.38889 -33.74034 -32.48781 -31.70267 -30.39189 -29.92349 -26.80340 -25.74596 -25.52518 -24.37653 -22.52860 -22.18382 -21.06386 -20.60883 -20.53404 -18.51954 -17.98006 -17.38536 -16.78752 -16.63262 -16.34972 -15.70729 -15.25085 -14.99178 -14.93245 -14.78419 -14.55158 -14.20630 -13.99216 -13.91432 -13.70071 -13.40451 -13.33083 -13.13026 -12.83868 -12.71189 -12.38168 -12.27644 -11.98120 -11.70805 -11.54368 -11.47984 -11.24117 -10.96108 -10.84823 -10.78733 -10.77612 -10.25131 -10.22445 -9.92870 -9.49207 -9.36837 -8.96034 -8.81530 -8.38467 -7.49184 -6.50531 -4.17541 1.90867 2.02238 2.77025 3.16524 3.19688 3.20236 3.34349 3.41293 4.12126 4.16122 4.20511 4.25809 4.35083 4.43354 4.50163 4.67811 4.74263 4.82530 4.94774 5.01377 5.11895 5.14494 5.17537 5.22659 5.28309 5.36666 5.44507 5.51432 5.53763 5.56265 5.62356 5.73940 5.80888 5.87508 6.02549 6.24667 6.28274 6.44873 6.54086 6.67327 6.73535 6.81196 6.95404 7.12445 7.18717 7.49380 7.70014 7.93509 7.98412 8.57386 8.84015 9.44637 10.56575 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.001811 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.061931 B =15460.234638 C =16341.120720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.108 0.892 9 O -0.213 6.213 10 C 0.167 3.833 11 C -0.224 4.224 12 C -0.051 4.051 13 C -0.206 4.206 14 C 0.197 3.803 15 N -0.738 5.738 16 C 0.701 3.299 17 O -0.597 6.597 18 N -0.752 5.752 19 C 0.147 3.853 20 C -0.136 4.136 21 H 0.087 0.913 22 C -0.115 4.115 23 C -0.155 4.155 24 C 0.057 3.943 25 O -0.381 6.381 26 C 0.065 3.935 27 C -0.056 4.056 28 C -0.196 4.196 29 H 0.281 0.719 30 H 0.134 0.866 31 H 0.111 0.889 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.398 0.602 35 H 0.396 0.604 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.051 0.949 43 H 0.093 0.907 44 H 0.054 0.946 45 H 0.094 0.906 46 H 0.114 0.886 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.599 -19.561 -13.008 27.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.467 4.467 8 H 0.125 0.875 9 O -0.117 6.117 10 C 0.113 3.887 11 C -0.244 4.244 12 C -0.070 4.070 13 C -0.207 4.207 14 C 0.074 3.926 15 N -0.393 5.393 16 C 0.401 3.599 17 O -0.475 6.475 18 N -0.408 5.408 19 C 0.023 3.977 20 C -0.155 4.155 21 H 0.106 0.894 22 C -0.153 4.153 23 C -0.193 4.193 24 C -0.019 4.019 25 O -0.299 6.299 26 C -0.012 4.012 27 C -0.074 4.074 28 C -0.215 4.215 29 H 0.091 0.909 30 H 0.152 0.848 31 H 0.129 0.871 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.232 0.768 35 H 0.230 0.770 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.091 0.909 42 H 0.069 0.931 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.113 0.887 46 H 0.132 0.868 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 14.782 -19.748 -12.274 27.552 hybrid contribution -0.111 1.083 -0.438 1.174 sum 14.671 -18.664 -12.712 26.929 Atomic orbital electron populations 1.69640 1.05598 1.28673 1.47301 1.24489 0.95049 0.98930 0.95489 0.86173 0.80343 0.81329 0.79021 1.19814 1.20685 1.18326 1.20785 0.76762 0.96723 1.52430 0.87493 1.83576 1.22764 1.25841 1.79530 1.19187 0.91744 0.85504 0.92218 1.21284 1.01253 0.91768 1.10055 1.20706 0.93343 0.96842 0.96139 1.19294 0.93786 0.93552 1.14081 1.19846 0.99783 0.93064 0.79943 1.45482 1.63541 1.20679 1.09592 1.16001 0.79169 0.82061 0.82641 1.90915 1.54615 1.52964 1.49046 1.45155 1.66009 1.23357 1.06324 1.21117 0.98523 0.85345 0.92764 1.22073 0.97933 1.00135 0.95341 0.89448 1.21556 1.00970 0.96945 0.95823 1.22191 0.97752 1.03041 0.96342 1.22611 0.91650 0.87424 1.00249 1.87969 1.77135 1.42654 1.22188 1.22660 0.94977 1.02146 0.81442 1.20543 0.98445 0.91198 0.97248 1.20215 0.91940 0.97910 1.11420 0.90904 0.84793 0.87078 0.91623 0.91647 0.76848 0.77000 0.91291 0.91503 0.90886 0.91291 0.90619 0.90888 0.93111 0.88848 0.92754 0.88745 0.86760 0.86380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.62 13.96 55.48 0.77 -23.85 16 2 C 0.06 1.76 5.49 -17.52 -0.10 1.66 16 3 Si 0.91 21.06 28.62 -169.99 -4.86 16.20 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 6 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.67 9.95 30.88 0.31 -10.36 16 8 H 0.11 2.97 5.44 -52.48 -0.29 2.68 16 9 O -0.21 -5.40 8.59 0.03 0.00 -5.40 16 10 C 0.17 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.22 -4.55 9.17 -39.40 -0.36 -4.91 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.25 16 13 C -0.21 -3.12 5.25 -104.58 -0.55 -3.67 16 14 C 0.20 2.65 5.80 -5.19 -0.03 2.62 16 15 N -0.74 -8.83 5.55 -66.41 -0.37 -9.20 16 16 C 0.70 9.03 8.57 -86.92 -0.74 8.29 16 17 O -0.60 -10.07 16.34 5.28 0.09 -9.99 16 18 N -0.75 -6.82 5.31 -65.22 -0.35 -7.17 16 19 C 0.15 1.18 5.07 -4.04 -0.02 1.16 16 20 C -0.14 -0.83 2.43 -90.48 -0.22 -1.05 16 21 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 22 C -0.11 -0.60 5.31 -26.54 -0.14 -0.74 16 23 C -0.16 -0.76 6.14 -26.58 -0.16 -0.92 16 24 C 0.06 0.34 6.84 37.21 0.25 0.59 16 25 O -0.38 -3.22 10.77 -35.23 -0.38 -3.60 16 26 C 0.06 0.45 5.97 37.20 0.22 0.67 16 27 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 28 C -0.20 -3.62 9.99 -39.40 -0.39 -4.01 16 29 H 0.28 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.13 2.88 5.64 -52.48 -0.30 2.59 16 31 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 32 H 0.07 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.07 0.89 8.08 -51.92 -0.42 0.47 16 34 H 0.40 4.12 8.48 -40.82 -0.35 3.77 16 35 H 0.40 2.71 7.68 -40.82 -0.31 2.39 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.09 0.62 7.25 -51.93 -0.38 0.24 16 46 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 47 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 387.02 15.07 5.83 5.83 Total: -1.00 -31.55 387.02 -9.32 -40.86 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -7.09 Total: 6.09 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -2.96 Total: -9.78 kcal Atomic # 7 Polarization: -40.28 SS G_CDS: 0.06 Total: -40.22 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.29 Total: -18.99 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.55 -9.32 -40.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170799579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.879 kcal (2) G-P(sol) polarization free energy of solvation -31.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds