Wall clock time and date at job start Wed Apr 1 2020 00:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31553 * 1 3 3 Si 1.86802 * 119.99996 * 2 1 4 4 H 1.48499 * 109.46966 * 270.00250 * 3 2 1 5 5 H 1.48506 * 109.47159 * 29.99796 * 3 2 1 6 6 H 1.48496 * 109.47461 * 149.99757 * 3 2 1 7 7 C 1.38650 * 120.00549 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99692 * 0.02562 * 7 2 1 9 9 O 1.34829 * 120.00295 * 180.02562 * 7 2 1 10 10 C 1.35756 * 116.99743 * 185.06073 * 9 7 2 11 11 C 1.38879 * 120.07225 * 354.45684 * 10 9 7 12 12 C 1.38093 * 119.93279 * 180.02562 * 11 10 9 13 13 C 1.38296 * 120.06787 * 0.02616 * 12 11 10 14 14 C 1.50703 * 119.93026 * 179.97438 * 13 12 11 15 15 N 1.46500 * 109.47209 * 90.00042 * 14 13 12 16 16 C 1.34778 * 120.00037 * 179.97438 * 15 14 13 17 17 O 1.21593 * 119.99810 * 359.97438 * 16 15 14 18 18 N 1.34770 * 119.99870 * 179.72365 * 16 15 14 19 19 C 1.46505 * 119.99782 * 180.27665 * 18 16 15 20 20 C 1.53006 * 109.47068 * 179.97438 * 19 18 16 21 21 H 1.09001 * 109.51620 * 55.13001 * 20 19 18 22 22 C 1.53179 * 109.51894 * 175.31527 * 20 19 18 23 23 C 1.53184 * 109.03106 * 176.89176 * 22 20 19 24 24 C 1.53100 * 109.15895 * 303.01597 * 23 22 20 25 25 O 1.42895 * 109.41570 * 57.61508 * 24 23 22 26 26 C 1.42909 * 114.09545 * 298.83745 * 25 24 23 27 27 C 1.38300 * 120.14117 * 0.25035 * 13 12 11 28 28 C 1.38098 * 120.06481 * 359.45182 * 27 13 12 29 29 H 0.97001 * 120.00189 * 359.97438 * 1 2 3 30 30 H 1.08011 * 120.02968 * 0.02562 * 11 10 9 31 31 H 1.08002 * 119.96683 * 180.02562 * 12 11 10 32 32 H 1.09003 * 109.47097 * 329.99495 * 14 13 12 33 33 H 1.09008 * 109.46877 * 210.00340 * 14 13 12 34 34 H 0.97000 * 119.99802 * 359.97438 * 15 14 13 35 35 H 0.97000 * 120.00503 * 0.27473 * 18 16 15 36 36 H 1.08998 * 109.47192 * 300.00074 * 19 18 16 37 37 H 1.09004 * 109.46941 * 60.00237 * 19 18 16 38 38 H 1.08997 * 109.54385 * 296.75198 * 22 20 19 39 39 H 1.08990 * 109.54507 * 57.02256 * 22 20 19 40 40 H 1.09005 * 109.51625 * 183.11780 * 23 22 20 41 41 H 1.08993 * 109.52515 * 62.91951 * 23 22 20 42 42 H 1.09000 * 109.47886 * 297.62677 * 24 23 22 43 43 H 1.08996 * 109.47349 * 177.59792 * 24 23 22 44 44 H 1.08997 * 109.48109 * 301.17924 * 26 25 24 45 45 H 1.08999 * 109.48748 * 181.14683 * 26 25 24 46 46 H 1.08004 * 119.96574 * 179.70289 * 27 13 12 47 47 H 1.07999 * 120.03549 * 180.27127 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4970 2.0464 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4403 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1361 0.0005 9 8 3.3572 -1.2006 0.0011 10 6 3.9735 -2.4055 -0.1051 11 6 3.2236 -3.5744 -0.0921 12 6 3.8536 -4.7985 -0.1998 13 6 5.2299 -4.8613 -0.3200 14 6 5.9143 -6.1989 -0.4367 15 7 6.0188 -6.5723 -1.8494 16 6 6.6001 -7.7375 -2.1972 17 8 7.0382 -8.4785 -1.3385 18 7 6.6912 -8.0836 -3.4965 19 6 7.3176 -9.3530 -3.8742 20 6 7.2916 -9.5014 -5.3968 21 1 7.7640 -8.6328 -5.8555 22 6 8.0489 -10.7703 -5.8004 23 6 7.9498 -10.9497 -7.3185 24 6 6.4741 -11.0001 -7.7232 25 8 5.8219 -9.8043 -7.2912 26 6 5.8415 -9.6078 -5.8758 27 6 5.9801 -3.6994 -0.3275 28 6 5.3554 -2.4719 -0.2264 29 1 -0.4850 0.8400 0.0004 30 1 2.1487 -3.5259 0.0021 31 1 3.2709 -5.7078 -0.1902 32 1 5.3336 -6.9518 0.0963 33 1 6.9123 -6.1355 -0.0028 34 1 5.6696 -5.9810 -2.5345 35 1 6.3420 -7.4924 -4.1817 36 1 8.3500 -9.3667 -3.5250 37 1 6.7692 -10.1782 -3.4197 38 1 9.0958 -10.6775 -5.5118 39 1 7.6069 -11.6328 -5.3017 40 1 8.4389 -11.8798 -7.6080 41 1 8.4357 -10.1109 -7.8168 42 1 5.9985 -11.8627 -7.2564 43 1 6.3973 -11.0848 -8.8072 44 1 5.3575 -10.4521 -5.3849 45 1 5.3087 -8.6895 -5.6288 46 1 7.0551 -3.7520 -0.4167 47 1 5.9413 -1.5647 -0.2367 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170799579.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:19 Heat of formation + Delta-G solvation = -112.210778 kcal Electronic energy + Delta-G solvation = -27321.611609 eV Core-core repulsion = 23275.717961 eV Total energy + Delta-G solvation = -4045.893648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 8.60 seconds Orbital eigenvalues (eV) -41.26426 -40.85314 -40.21518 -38.65076 -36.62028 -35.58863 -34.47335 -34.31063 -32.39824 -31.86116 -31.19645 -27.95923 -27.08736 -26.02889 -25.68675 -23.71389 -23.11562 -22.08929 -21.92487 -21.10498 -19.86301 -19.44228 -19.07849 -17.55090 -17.33712 -16.96790 -16.78983 -16.49005 -16.20391 -15.85428 -15.74825 -15.64874 -15.54346 -15.44395 -15.12031 -14.73625 -14.56049 -14.31633 -14.23908 -14.05931 -13.89899 -13.58292 -13.31677 -13.10123 -12.89455 -12.57888 -12.46816 -12.31458 -12.17372 -12.03248 -11.93681 -11.73967 -11.35752 -11.30189 -11.25320 -10.90982 -10.46276 -10.33317 -9.84287 -9.72656 -9.10369 -8.50714 -6.23773 0.47663 0.54993 1.32586 1.35651 1.52359 1.82135 2.18196 2.27586 2.75032 2.92198 3.02807 3.12622 3.43159 3.70296 3.75997 3.84778 3.86319 4.02174 4.02468 4.14584 4.21696 4.33768 4.45561 4.50223 4.54834 4.58513 4.68872 4.70741 4.75973 4.81321 4.82909 4.94877 4.96523 5.02702 5.09797 5.19252 5.22649 5.33772 5.36934 5.47428 5.52144 5.54511 5.71482 5.79066 5.88400 6.01053 6.19632 6.24719 6.83408 7.09476 7.56335 7.59564 8.60460 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017841 B = 0.001811 C = 0.001713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.061931 B =15460.234638 C =16341.120720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.129 3.871 11 C -0.239 4.239 12 C -0.049 4.049 13 C -0.172 4.172 14 C 0.202 3.798 15 N -0.731 5.731 16 C 0.700 3.300 17 O -0.637 6.637 18 N -0.737 5.737 19 C 0.150 3.850 20 C -0.123 4.123 21 H 0.089 0.911 22 C -0.116 4.116 23 C -0.151 4.151 24 C 0.050 3.950 25 O -0.403 6.403 26 C 0.062 3.938 27 C -0.044 4.044 28 C -0.192 4.192 29 H 0.285 0.715 30 H 0.109 0.891 31 H 0.133 0.867 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.408 0.592 35 H 0.409 0.591 36 H 0.064 0.936 37 H 0.059 0.941 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.102 0.898 44 H 0.054 0.946 45 H 0.095 0.905 46 H 0.154 0.846 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.571 -20.825 -14.092 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.100 0.900 9 O -0.149 6.149 10 C 0.079 3.921 11 C -0.258 4.258 12 C -0.068 4.068 13 C -0.174 4.174 14 C 0.078 3.922 15 N -0.387 5.387 16 C 0.400 3.600 17 O -0.518 6.518 18 N -0.393 5.393 19 C 0.026 3.974 20 C -0.142 4.142 21 H 0.107 0.893 22 C -0.154 4.154 23 C -0.189 4.189 24 C -0.026 4.026 25 O -0.323 6.323 26 C -0.014 4.014 27 C -0.062 4.062 28 C -0.211 4.211 29 H 0.094 0.906 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.243 0.757 35 H 0.245 0.755 36 H 0.082 0.918 37 H 0.078 0.922 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.114 0.886 46 H 0.171 0.829 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.776 -21.042 -13.409 30.636 hybrid contribution -0.826 1.091 -0.164 1.378 sum 16.951 -19.951 -13.573 29.489 Atomic orbital electron populations 1.69725 1.06926 1.29641 1.49860 1.25288 0.95875 1.02206 0.95484 0.85217 0.78808 0.77401 0.79302 1.18999 1.19406 1.18631 1.20706 0.78033 0.96149 1.52689 0.89967 1.83524 1.21297 1.27546 1.82560 1.19747 0.93278 0.85040 0.94009 1.21270 1.00313 0.93063 1.11151 1.20917 0.94392 0.96190 0.95276 1.19538 0.92981 0.94631 1.10211 1.19738 0.99913 0.91561 0.80939 1.45228 1.63488 1.20773 1.09191 1.16100 0.78873 0.81729 0.83278 1.90896 1.56355 1.54140 1.50457 1.45057 1.65120 1.23781 1.05389 1.21152 0.97909 0.84472 0.93914 1.21951 0.97683 1.00816 0.93722 0.89282 1.21588 1.01199 0.96437 0.96175 1.22162 0.97093 1.03718 0.95888 1.22796 0.92186 0.86766 1.00900 1.87937 1.77716 1.43831 1.22779 1.22699 0.95422 1.02237 0.81080 1.20952 1.00355 0.89830 0.95094 1.20520 0.90457 0.99825 1.10304 0.90555 0.87295 0.84872 0.91686 0.90799 0.75666 0.75465 0.91781 0.92226 0.90231 0.91017 0.89055 0.91251 0.92606 0.87997 0.92813 0.88642 0.82850 0.85092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 13.96 21.61 0.30 -53.81 16 2 C 0.01 0.58 5.49 84.83 0.47 1.04 16 3 Si 0.97 44.41 28.62 68.60 1.96 46.37 16 4 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.40 -22.92 9.95 67.92 0.68 -22.25 16 8 H 0.08 4.94 5.44 -2.91 -0.02 4.92 16 9 O -0.24 -12.68 8.59 -22.80 -0.20 -12.88 16 10 C 0.13 5.69 6.65 22.58 0.15 5.84 16 11 C -0.24 -9.86 9.17 22.39 0.21 -9.66 16 12 C -0.05 -1.56 9.69 22.25 0.22 -1.35 16 13 C -0.17 -4.65 5.25 -19.83 -0.10 -4.75 16 14 C 0.20 4.70 5.80 85.63 0.50 5.20 16 15 N -0.73 -15.04 5.55 -482.28 -2.68 -17.72 16 16 C 0.70 16.21 8.57 179.06 1.53 17.75 16 17 O -0.64 -20.17 16.34 -4.01 -0.07 -20.24 16 18 N -0.74 -11.59 5.31 -478.51 -2.54 -14.13 16 19 C 0.15 2.12 5.07 86.38 0.44 2.56 16 20 C -0.12 -1.26 2.43 -10.70 -0.03 -1.29 16 21 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 22 C -0.12 -0.96 5.31 30.72 0.16 -0.80 16 23 C -0.15 -1.15 6.14 30.69 0.19 -0.96 16 24 C 0.05 0.50 6.84 72.02 0.49 0.99 16 25 O -0.40 -6.26 10.77 -148.98 -1.60 -7.87 16 26 C 0.06 0.77 5.97 72.01 0.43 1.20 16 27 C -0.04 -1.20 9.69 22.25 0.22 -0.98 16 28 C -0.19 -6.72 9.99 22.39 0.22 -6.50 16 29 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 30 H 0.11 5.03 5.64 -2.90 -0.02 5.01 16 31 H 0.13 3.64 8.06 -2.91 -0.02 3.62 16 32 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 33 H 0.07 1.69 8.08 -2.38 -0.02 1.67 16 34 H 0.41 6.96 8.48 -92.71 -0.79 6.17 16 35 H 0.41 4.46 7.68 -92.71 -0.71 3.75 16 36 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 38 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.09 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 42 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.10 1.10 7.25 -2.39 -0.02 1.08 16 46 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 47 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -71.18 387.02 0.44 -70.74 By element: Atomic # 1 Polarization: 24.00 SS G_CDS: -0.50 Total: 23.50 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 5.76 Total: -13.96 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -4.92 Total: -85.67 kcal Atomic # 8 Polarization: -39.12 SS G_CDS: -1.87 Total: -40.98 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.96 Total: 46.37 kcal Total: -71.18 0.44 -70.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170799579.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.469 kcal (2) G-P(sol) polarization free energy of solvation -71.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.60 seconds