Wall clock time and date at job start Wed Apr 1 2020 00:14:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48496 * 109.47259 * 270.00335 * 3 2 1 5 5 H 1.48500 * 109.46974 * 30.00844 * 3 2 1 6 6 H 1.48508 * 109.46754 * 150.00078 * 3 2 1 7 7 C 1.38653 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99744 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00042 * 185.05955 * 9 7 2 11 11 C 1.38879 * 120.06614 * 354.46571 * 10 9 7 12 12 C 1.38103 * 119.93272 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06597 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93326 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47490 * 89.99967 * 14 13 12 16 16 C 1.34773 * 120.00316 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00199 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00076 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00158 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47117 * 179.97438 * 19 18 16 21 21 C 1.53185 * 109.53864 * 65.44624 * 20 19 18 22 22 C 1.53093 * 109.15724 * 176.84584 * 21 20 19 23 23 O 1.42902 * 109.41757 * 302.38700 * 22 21 20 24 24 C 1.42904 * 114.09355 * 61.16225 * 23 22 21 25 25 C 1.53091 * 109.41502 * 298.84006 * 24 23 22 26 26 C 1.38305 * 120.13535 * 0.25241 * 13 12 11 27 27 C 1.38101 * 120.07113 * 359.45334 * 26 13 12 28 28 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.03678 * 359.97438 * 11 10 9 30 30 H 1.07996 * 119.96881 * 179.97438 * 12 11 10 31 31 H 1.09008 * 109.46990 * 330.00224 * 14 13 12 32 32 H 1.09004 * 109.47361 * 210.00171 * 14 13 12 33 33 H 0.96999 * 119.99595 * 0.02562 * 15 14 13 34 34 H 0.96999 * 119.99834 * 359.97438 * 18 16 15 35 35 H 1.09002 * 109.46847 * 59.99672 * 19 18 16 36 36 H 1.08993 * 109.46711 * 300.00066 * 19 18 16 37 37 H 1.08998 * 109.61604 * 305.22619 * 20 19 18 38 38 H 1.09002 * 109.52343 * 296.74700 * 21 20 19 39 39 H 1.08994 * 109.52172 * 56.94231 * 21 20 19 40 40 H 1.09001 * 109.47666 * 182.40705 * 22 21 20 41 41 H 1.08997 * 109.48402 * 62.37862 * 22 21 20 42 42 H 1.09006 * 109.47459 * 178.86098 * 24 23 22 43 43 H 1.08997 * 109.49249 * 58.83017 * 24 23 22 44 44 H 1.08999 * 109.52254 * 297.70228 * 25 24 23 45 45 H 1.08998 * 109.51889 * 177.51835 * 25 24 23 46 46 H 1.08005 * 119.96145 * 179.70586 * 26 13 12 47 47 H 1.07995 * 120.03072 * 180.26935 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4394 0.0922 12 6 4.2026 -4.5970 0.1998 13 6 3.5689 -5.8205 0.3203 14 6 4.3851 -7.0818 0.4370 15 7 4.6567 -7.3589 1.8496 16 6 5.3762 -8.4442 2.1973 17 8 5.7994 -9.1937 1.3386 18 7 5.6256 -8.6994 3.4970 19 6 6.4072 -9.8794 3.8750 20 6 6.5438 -9.9343 5.3979 21 6 5.1652 -10.1552 6.0283 22 6 5.3219 -10.2875 7.5454 23 8 6.2133 -11.3652 7.8388 24 6 7.5313 -11.1912 7.3147 25 6 7.4635 -11.0953 5.7883 26 6 2.1875 -5.8891 0.3282 27 6 1.4367 -4.7345 0.2270 28 1 -0.4850 0.8400 0.0004 29 1 3.9526 -2.4845 -0.0031 30 1 5.2813 -4.5471 0.1890 31 1 5.3274 -6.9554 -0.0962 32 1 3.8312 -7.9145 0.0034 33 1 4.3188 -6.7611 2.5347 34 1 5.2877 -8.1016 4.1822 35 1 7.3975 -9.8192 3.4236 36 1 5.9013 -10.7783 3.5226 37 1 6.9650 -8.9971 5.7615 38 1 4.5206 -9.3061 5.8013 39 1 4.7231 -11.0670 5.6269 40 1 4.3494 -10.4875 7.9952 41 1 5.7264 -9.3603 7.9513 42 1 8.1504 -12.0424 7.5983 43 1 7.9650 -10.2760 7.7175 44 1 7.0677 -12.0261 5.3821 45 1 8.4625 -10.9186 5.3898 46 1 1.6956 -6.8465 0.4177 47 1 0.3581 -4.7885 0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170804269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:28 Heat of formation + Delta-G solvation = -92.917916 kcal Electronic energy + Delta-G solvation = -27277.500433 eV Core-core repulsion = 23232.443387 eV Total energy + Delta-G solvation = -4045.057046 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.30213 -39.59954 -39.06537 -36.98420 -36.02583 -34.34066 -33.24644 -32.36888 -31.55630 -30.30772 -29.92514 -27.62085 -25.81511 -24.65974 -24.05271 -23.01921 -22.07088 -20.97200 -20.64876 -20.52548 -18.48872 -18.08186 -17.11314 -16.64789 -16.43685 -16.38915 -15.77605 -15.24964 -15.04948 -14.80622 -14.71910 -14.56638 -14.39585 -13.91160 -13.80856 -13.69637 -13.44884 -13.24318 -12.81197 -12.79966 -12.75442 -12.46528 -12.07663 -11.80152 -11.70052 -11.46672 -11.41019 -11.11141 -10.98432 -10.81149 -10.75287 -10.70078 -10.51023 -10.21914 -9.97382 -9.44850 -9.33210 -8.93343 -8.77393 -8.30392 -7.35161 -6.54959 -4.13914 2.00712 2.11163 2.81508 3.07231 3.07780 3.12553 3.23416 3.44356 3.88471 4.15283 4.17185 4.25646 4.35988 4.52484 4.57600 4.74955 4.86783 4.97811 5.00022 5.12319 5.15200 5.15675 5.23228 5.23515 5.29734 5.42834 5.45207 5.52559 5.60355 5.63181 5.65426 5.80563 5.85999 5.92668 6.10332 6.32631 6.33680 6.55930 6.59897 6.74759 6.78382 6.86371 6.97179 7.13891 7.26029 7.33278 7.69608 7.89695 8.02204 8.61065 8.90355 9.58498 10.62506 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.001767 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.399350 B =15839.758930 C =16519.471921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.040 3.960 3 Si 0.942 3.058 4 H -0.272 1.272 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.161 3.839 11 C -0.237 4.237 12 C -0.050 4.050 13 C -0.214 4.214 14 C 0.198 3.802 15 N -0.738 5.738 16 C 0.701 3.299 17 O -0.597 6.597 18 N -0.750 5.750 19 C 0.147 3.853 20 C -0.102 4.102 21 C -0.152 4.152 22 C 0.060 3.940 23 O -0.384 6.384 24 C 0.061 3.939 25 C -0.149 4.149 26 C -0.054 4.054 27 C -0.196 4.196 28 H 0.271 0.729 29 H 0.128 0.872 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.395 0.605 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.095 0.905 43 H 0.051 0.949 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.113 0.887 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.689 -17.567 13.230 25.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.165 4.165 3 Si 0.767 3.233 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.470 4.470 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.106 3.894 11 C -0.257 4.257 12 C -0.069 4.069 13 C -0.216 4.216 14 C 0.075 3.925 15 N -0.393 5.393 16 C 0.400 3.600 17 O -0.476 6.476 18 N -0.407 5.407 19 C 0.022 3.978 20 C -0.121 4.121 21 C -0.190 4.190 22 C -0.017 4.017 23 O -0.303 6.303 24 C -0.016 4.016 25 C -0.187 4.187 26 C -0.072 4.072 27 C -0.215 4.215 28 H 0.081 0.919 29 H 0.146 0.854 30 H 0.126 0.874 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.231 0.769 34 H 0.228 0.772 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.113 0.887 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.131 0.869 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 12.582 -18.197 12.480 25.401 hybrid contribution 0.225 1.763 0.392 1.820 sum 12.806 -16.434 12.872 24.490 Atomic orbital electron populations 1.70036 1.06001 1.27877 1.45414 1.25321 0.95867 0.98939 0.96353 0.85695 0.78917 0.79917 0.78816 1.19783 1.20181 1.19148 1.21354 0.91865 0.80720 1.53018 0.88922 1.83978 1.34508 1.11566 1.77540 1.19439 0.90318 0.88051 0.91616 1.21162 0.93776 0.98958 1.11783 1.20650 0.98386 0.91622 0.96239 1.19224 0.93556 0.93636 1.15147 1.19826 0.98252 0.94571 0.79844 1.45510 1.57344 1.26790 1.09642 1.16020 0.79384 0.81896 0.82662 1.90909 1.57564 1.50048 1.49073 1.45129 1.59787 1.29584 1.06190 1.21160 0.95838 0.87738 0.93056 1.21457 0.96324 0.99563 0.94768 1.22280 0.96997 1.03367 0.96339 1.22600 0.94292 0.90170 0.94633 1.87950 1.21553 1.44273 1.76484 1.22575 0.84533 1.01941 0.92521 1.22170 1.00372 0.99023 0.97121 1.20542 0.92779 0.96818 0.97109 1.20218 0.99677 0.90247 1.11363 0.91870 0.85431 0.87398 0.91796 0.91743 0.76934 0.77156 0.91600 0.91567 0.90290 0.90637 0.90580 0.88719 0.93105 0.88707 0.93119 0.90489 0.90361 0.86947 0.86381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.50 13.67 55.48 0.76 -23.74 16 2 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 3 Si 0.94 19.87 29.55 -169.99 -5.02 14.85 16 4 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.39 -10.62 9.49 30.89 0.29 -10.32 16 8 H 0.09 2.30 5.20 -52.48 -0.27 2.03 16 9 O -0.17 -4.77 9.76 0.05 0.00 -4.77 16 10 C 0.16 3.69 6.65 -39.11 -0.26 3.43 16 11 C -0.24 -4.86 9.17 -39.39 -0.36 -5.22 16 12 C -0.05 -0.86 9.69 -39.61 -0.38 -1.24 16 13 C -0.21 -3.39 5.25 -104.58 -0.55 -3.94 16 14 C 0.20 2.78 5.80 -5.20 -0.03 2.75 16 15 N -0.74 -9.15 5.55 -66.41 -0.37 -9.52 16 16 C 0.70 9.32 8.57 -86.92 -0.74 8.57 16 17 O -0.60 -10.38 16.34 5.29 0.09 -10.29 16 18 N -0.75 -7.01 5.32 -65.23 -0.35 -7.36 16 19 C 0.15 1.23 5.07 -4.04 -0.02 1.21 16 20 C -0.10 -0.61 2.31 -90.44 -0.21 -0.81 16 21 C -0.15 -0.91 5.26 -26.59 -0.14 -1.05 16 22 C 0.06 0.37 6.84 37.21 0.25 0.62 16 23 O -0.38 -3.08 10.77 -35.23 -0.38 -3.46 16 24 C 0.06 0.35 6.84 37.20 0.25 0.60 16 25 C -0.15 -0.81 5.42 -26.59 -0.14 -0.96 16 26 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 27 C -0.20 -3.90 9.99 -39.40 -0.39 -4.29 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 30 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 31 H 0.06 0.93 8.08 -51.92 -0.42 0.51 16 32 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.40 4.27 8.48 -40.82 -0.35 3.92 16 34 H 0.39 2.73 7.72 -40.82 -0.32 2.41 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.40 7.31 -51.93 -0.38 0.02 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 47 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -32.57 388.23 -9.42 -41.98 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -7.08 Total: 7.41 kcal Atomic # 6 Polarization: -8.03 SS G_CDS: -2.91 Total: -10.95 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: 0.04 Total: -40.62 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.29 Total: -18.52 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.57 -9.42 -41.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170804269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.936 kcal (2) G-P(sol) polarization free energy of solvation -32.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds