Wall clock time and date at job start Wed Apr 1 2020 00:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86803 * 119.99731 * 2 1 4 4 H 1.48496 * 109.47259 * 270.00335 * 3 2 1 5 5 H 1.48500 * 109.46974 * 30.00844 * 3 2 1 6 6 H 1.48508 * 109.46754 * 150.00078 * 3 2 1 7 7 C 1.38653 * 119.99971 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99744 * 179.97438 * 7 2 1 9 9 O 1.34828 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00042 * 185.05955 * 9 7 2 11 11 C 1.38879 * 120.06614 * 354.46571 * 10 9 7 12 12 C 1.38103 * 119.93272 * 180.02562 * 11 10 9 13 13 C 1.38305 * 120.06597 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93326 * 179.97438 * 13 12 11 15 15 N 1.46498 * 109.47490 * 89.99967 * 14 13 12 16 16 C 1.34773 * 120.00316 * 180.02562 * 15 14 13 17 17 O 1.21581 * 120.00199 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00076 * 180.02562 * 16 15 14 19 19 C 1.46501 * 120.00158 * 179.97438 * 18 16 15 20 20 C 1.52996 * 109.47117 * 179.97438 * 19 18 16 21 21 C 1.53185 * 109.53864 * 65.44624 * 20 19 18 22 22 C 1.53093 * 109.15724 * 176.84584 * 21 20 19 23 23 O 1.42902 * 109.41757 * 302.38700 * 22 21 20 24 24 C 1.42904 * 114.09355 * 61.16225 * 23 22 21 25 25 C 1.53091 * 109.41502 * 298.84006 * 24 23 22 26 26 C 1.38305 * 120.13535 * 0.25241 * 13 12 11 27 27 C 1.38101 * 120.07113 * 359.45334 * 26 13 12 28 28 H 0.97000 * 120.00059 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.03678 * 359.97438 * 11 10 9 30 30 H 1.07996 * 119.96881 * 179.97438 * 12 11 10 31 31 H 1.09008 * 109.46990 * 330.00224 * 14 13 12 32 32 H 1.09004 * 109.47361 * 210.00171 * 14 13 12 33 33 H 0.96999 * 119.99595 * 0.02562 * 15 14 13 34 34 H 0.96999 * 119.99834 * 359.97438 * 18 16 15 35 35 H 1.09002 * 109.46847 * 59.99672 * 19 18 16 36 36 H 1.08993 * 109.46711 * 300.00066 * 19 18 16 37 37 H 1.08998 * 109.61604 * 305.22619 * 20 19 18 38 38 H 1.09002 * 109.52343 * 296.74700 * 21 20 19 39 39 H 1.08994 * 109.52172 * 56.94231 * 21 20 19 40 40 H 1.09001 * 109.47666 * 182.40705 * 22 21 20 41 41 H 1.08997 * 109.48402 * 62.37862 * 22 21 20 42 42 H 1.09006 * 109.47459 * 178.86098 * 24 23 22 43 43 H 1.08997 * 109.49249 * 58.83017 * 24 23 22 44 44 H 1.08999 * 109.52254 * 297.70228 * 25 24 23 45 45 H 1.08998 * 109.51889 * 177.51835 * 25 24 23 46 46 H 1.08005 * 119.96145 * 179.70586 * 26 13 12 47 47 H 1.07995 * 120.03072 * 180.26935 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4969 2.0466 -1.4000 5 1 1.4470 2.6526 0.7002 6 1 3.5471 1.4402 0.7001 7 6 2.0088 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1056 11 6 3.4572 -3.4394 0.0922 12 6 4.2026 -4.5970 0.1998 13 6 3.5689 -5.8205 0.3203 14 6 4.3851 -7.0818 0.4370 15 7 4.6567 -7.3589 1.8496 16 6 5.3762 -8.4442 2.1973 17 8 5.7994 -9.1937 1.3386 18 7 5.6256 -8.6994 3.4970 19 6 6.4072 -9.8794 3.8750 20 6 6.5438 -9.9343 5.3979 21 6 5.1652 -10.1552 6.0283 22 6 5.3219 -10.2875 7.5454 23 8 6.2133 -11.3652 7.8388 24 6 7.5313 -11.1912 7.3147 25 6 7.4635 -11.0953 5.7883 26 6 2.1875 -5.8891 0.3282 27 6 1.4367 -4.7345 0.2270 28 1 -0.4850 0.8400 0.0004 29 1 3.9526 -2.4845 -0.0031 30 1 5.2813 -4.5471 0.1890 31 1 5.3274 -6.9554 -0.0962 32 1 3.8312 -7.9145 0.0034 33 1 4.3188 -6.7611 2.5347 34 1 5.2877 -8.1016 4.1822 35 1 7.3975 -9.8192 3.4236 36 1 5.9013 -10.7783 3.5226 37 1 6.9650 -8.9971 5.7615 38 1 4.5206 -9.3061 5.8013 39 1 4.7231 -11.0670 5.6269 40 1 4.3494 -10.4875 7.9952 41 1 5.7264 -9.3603 7.9513 42 1 8.1504 -12.0424 7.5983 43 1 7.9650 -10.2760 7.7175 44 1 7.0677 -12.0261 5.3821 45 1 8.4625 -10.9186 5.3898 46 1 1.6956 -6.8465 0.4177 47 1 0.3581 -4.7885 0.2377 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170804269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:27 Heat of formation + Delta-G solvation = -115.555441 kcal Electronic energy + Delta-G solvation = -27278.482070 eV Core-core repulsion = 23232.443387 eV Total energy + Delta-G solvation = -4046.038683 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.23287 -40.75428 -40.17843 -38.54765 -36.80542 -35.58715 -34.31097 -33.94529 -32.00427 -31.83711 -31.29919 -28.44356 -27.52267 -26.01441 -24.52224 -23.68014 -23.63937 -22.17286 -21.89793 -21.07759 -19.88813 -19.44428 -18.81864 -17.55321 -17.04469 -16.93095 -16.74767 -16.39129 -16.31099 -15.97063 -15.81971 -15.60700 -15.52906 -15.30065 -15.24191 -14.80320 -14.40282 -14.35492 -14.28790 -13.87142 -13.62023 -13.32084 -13.26631 -13.03156 -12.99367 -12.55378 -12.36376 -12.24243 -12.22019 -12.11644 -11.99170 -11.60709 -11.38202 -11.19911 -11.19163 -10.80784 -10.47437 -10.35374 -9.81882 -9.71599 -9.01790 -8.48243 -6.16472 0.53054 0.58057 1.35995 1.43949 1.52947 1.83723 2.17097 2.18629 2.80596 3.01006 3.13396 3.44800 3.48670 3.63995 3.74563 3.86265 3.89323 4.04025 4.09229 4.17954 4.32172 4.39094 4.47253 4.50442 4.57324 4.60505 4.68363 4.75826 4.78394 4.81505 4.83194 4.91447 4.96787 5.04713 5.14666 5.15140 5.16381 5.27060 5.36236 5.48123 5.53192 5.54596 5.69301 5.76108 6.01504 6.02947 6.16668 6.30444 6.96584 7.11232 7.60473 7.75871 8.74474 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.001767 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.399350 B =15839.758930 C =16519.471921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.022 4.022 3 Si 1.018 2.982 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.413 4.413 8 H 0.104 0.896 9 O -0.229 6.229 10 C 0.123 3.877 11 C -0.244 4.244 12 C -0.045 4.045 13 C -0.181 4.181 14 C 0.204 3.796 15 N -0.731 5.731 16 C 0.699 3.301 17 O -0.639 6.639 18 N -0.734 5.734 19 C 0.149 3.851 20 C -0.092 4.092 21 C -0.149 4.149 22 C 0.057 3.943 23 O -0.408 6.408 24 C 0.058 3.942 25 C -0.147 4.147 26 C -0.043 4.043 27 C -0.205 4.205 28 H 0.273 0.727 29 H 0.120 0.880 30 H 0.139 0.861 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.408 0.592 34 H 0.409 0.591 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.098 0.902 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.147 0.853 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.143 -18.739 14.396 28.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.220 4.220 3 Si 0.837 3.163 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.175 1.175 7 C -0.489 4.489 8 H 0.121 0.879 9 O -0.135 6.135 10 C 0.072 3.928 11 C -0.263 4.263 12 C -0.063 4.063 13 C -0.182 4.182 14 C 0.080 3.920 15 N -0.386 5.386 16 C 0.399 3.601 17 O -0.521 6.521 18 N -0.390 5.390 19 C 0.024 3.976 20 C -0.111 4.111 21 C -0.187 4.187 22 C -0.020 4.020 23 O -0.327 6.327 24 C -0.019 4.019 25 C -0.185 4.185 26 C -0.061 4.061 27 C -0.224 4.224 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.157 0.843 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.108 0.892 46 H 0.164 0.836 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 15.065 -19.412 13.697 28.132 hybrid contribution -0.396 1.713 0.079 1.760 sum 14.668 -17.699 13.776 26.799 Atomic orbital electron populations 1.70179 1.08015 1.28845 1.48597 1.26581 0.96830 1.02753 0.95824 0.84597 0.77876 0.74624 0.79207 1.18960 1.19694 1.17518 1.21829 0.92573 0.81320 1.53188 0.87879 1.83948 1.36072 1.12680 1.80837 1.19992 0.91631 0.87943 0.93260 1.21246 0.92999 1.00074 1.11992 1.20940 0.99803 0.90696 0.94865 1.19483 0.93425 0.94086 1.11192 1.19702 0.98025 0.93295 0.80945 1.45232 1.57288 1.26909 1.09189 1.16130 0.79127 0.81496 0.83360 1.90891 1.59198 1.51404 1.50559 1.45004 1.58973 1.29832 1.05224 1.21194 0.95023 0.86703 0.94656 1.21389 0.96573 1.00379 0.92778 1.22249 0.97021 1.03099 0.96324 1.22695 0.94414 0.90230 0.94618 1.87920 1.22622 1.45257 1.76937 1.22707 0.83850 1.02894 0.92420 1.22157 1.00809 0.98384 0.97128 1.20880 0.93073 0.96956 0.95205 1.20448 1.00084 0.90394 1.11469 0.91817 0.86176 0.84333 0.91498 0.91299 0.75679 0.75414 0.92246 0.92901 0.89033 0.89758 0.91867 0.88350 0.92030 0.87873 0.92105 0.91379 0.89223 0.83553 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.11 13.67 21.61 0.30 -54.82 16 2 C -0.02 -1.22 5.49 84.83 0.47 -0.75 16 3 Si 1.02 41.57 29.55 68.60 2.03 43.59 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 7 C -0.41 -23.24 9.49 67.92 0.64 -22.59 16 8 H 0.10 5.28 5.20 -2.91 -0.02 5.27 16 9 O -0.23 -13.31 9.76 -22.72 -0.22 -13.53 16 10 C 0.12 5.77 6.65 22.58 0.15 5.92 16 11 C -0.24 -9.88 9.17 22.39 0.21 -9.68 16 12 C -0.04 -1.40 9.69 22.25 0.22 -1.18 16 13 C -0.18 -5.09 5.25 -19.83 -0.10 -5.20 16 14 C 0.20 4.94 5.80 85.63 0.50 5.44 16 15 N -0.73 -15.46 5.55 -482.30 -2.68 -18.14 16 16 C 0.70 16.62 8.57 179.05 1.53 18.15 16 17 O -0.64 -20.86 16.34 -3.97 -0.06 -20.93 16 18 N -0.73 -11.66 5.32 -478.54 -2.55 -14.21 16 19 C 0.15 2.19 5.07 86.38 0.44 2.63 16 20 C -0.09 -0.88 2.31 -10.67 -0.02 -0.90 16 21 C -0.15 -1.47 5.26 30.69 0.16 -1.31 16 22 C 0.06 0.59 6.84 72.01 0.49 1.08 16 23 O -0.41 -5.92 10.77 -148.98 -1.60 -7.53 16 24 C 0.06 0.55 6.84 72.01 0.49 1.04 16 25 C -0.15 -1.32 5.42 30.68 0.17 -1.16 16 26 C -0.04 -1.30 9.69 22.25 0.22 -1.08 16 27 C -0.20 -8.11 9.99 22.39 0.22 -7.88 16 28 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.07 1.67 8.08 -2.38 -0.02 1.65 16 32 H 0.07 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.41 7.11 8.48 -92.71 -0.79 6.33 16 34 H 0.41 4.22 7.72 -92.71 -0.72 3.51 16 35 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 0.67 7.31 -2.39 -0.02 0.65 16 39 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 41 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 43 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.15 3.53 8.06 -2.91 -0.02 3.50 16 47 H 0.11 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -74.88 388.23 0.48 -74.40 By element: Atomic # 1 Polarization: 29.13 SS G_CDS: -0.50 Total: 28.63 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: 5.77 Total: -17.47 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -4.93 Total: -87.16 kcal Atomic # 8 Polarization: -40.09 SS G_CDS: -1.89 Total: -41.99 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Total: -74.88 0.48 -74.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170804269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.155 kcal (2) G-P(sol) polarization free energy of solvation -74.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds