Wall clock time and date at job start Tue Mar 31 2020 21:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 C 1.38258 * 119.88878 * 269.71717 * 17 16 15 19 19 C 1.38341 * 120.21318 * 179.75277 * 18 17 16 20 20 C 1.38461 * 119.71367 * 0.52219 * 19 18 17 21 21 C 1.38748 * 120.07128 * 359.76582 * 20 19 18 22 22 C 1.38338 * 119.89317 * 89.99873 * 17 16 15 23 23 O 1.36462 * 119.62140 * 179.97438 * 21 20 19 24 24 C 1.42911 * 115.92377 * 68.31697 * 23 21 20 25 25 C 1.52058 * 110.76796 * 275.60531 * 24 23 21 26 26 C 1.52067 * 112.37965 * 64.79413 * 25 24 23 27 27 O 1.36468 * 120.32079 * 179.74453 * 20 19 18 28 28 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 30 30 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 32 32 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 33 33 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 34 34 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 35 35 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 36 36 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 37 37 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 38 38 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 39 39 H 1.08004 * 119.89209 * 359.97438 * 18 17 16 40 40 H 1.08004 * 120.14551 * 180.24390 * 19 18 17 41 41 H 1.08000 * 120.14148 * 359.94803 * 22 17 16 42 42 H 1.08994 * 109.21896 * 35.93501 * 24 23 21 43 43 H 1.09003 * 109.21859 * 155.27570 * 24 23 21 44 44 H 1.09006 * 108.90522 * 185.54173 * 25 24 23 45 45 H 1.09002 * 108.90448 * 304.14595 * 25 24 23 46 46 H 1.09001 * 109.21100 * 55.50602 * 26 25 24 47 47 H 1.09000 * 109.21863 * 174.83875 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0001 12 7 6.0400 -4.0176 -0.0009 13 6 7.3651 -4.2639 -0.0005 14 8 8.1552 -3.3397 0.0009 15 7 7.8144 -5.5346 -0.0017 16 6 9.2547 -5.8022 0.0048 17 6 9.4889 -7.2909 0.0088 18 6 9.5968 -7.9682 1.2093 19 6 9.8067 -9.3355 1.2208 20 6 9.9193 -10.0226 0.0240 21 6 9.8170 -9.3420 -1.1807 22 6 9.6010 -7.9744 -1.1887 23 8 9.9299 -10.0283 -2.3548 24 6 8.8645 -10.9322 -2.6551 25 6 9.0893 -12.2747 -1.9775 26 6 9.0499 -12.1716 -0.4609 27 8 10.1317 -11.3707 0.0209 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6807 0.8905 30 1 3.8752 -0.6796 -0.8894 31 1 3.6586 -3.1494 -0.8920 32 1 3.6580 -3.1513 0.8880 33 1 5.9143 -2.1236 0.8907 34 1 5.9156 -2.1215 -0.8893 35 1 5.4097 -4.7550 -0.0016 36 1 7.1840 -6.2719 -0.0025 37 1 9.7095 -5.3652 -0.8842 38 1 9.7021 -5.3617 0.8958 39 1 9.5134 -7.4285 2.1412 40 1 9.8869 -9.8641 2.1592 41 1 9.5203 -7.4435 -2.1257 42 1 7.9238 -10.5069 -2.3054 43 1 8.8119 -11.0791 -3.7339 44 1 8.3153 -12.9693 -2.3044 45 1 10.0620 -12.6637 -2.2784 46 1 8.1056 -11.7203 -0.1564 47 1 9.1242 -13.1707 -0.0313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000170882468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:55 Heat of formation + Delta-G solvation = -89.894883 kcal Electronic energy + Delta-G solvation = -27340.364290 eV Core-core repulsion = 23295.438332 eV Total energy + Delta-G solvation = -4044.925958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37372 -39.93338 -38.42332 -37.94012 -35.73788 -34.77566 -33.41530 -33.18394 -31.63320 -31.08575 -30.01391 -27.50661 -27.01421 -25.58725 -23.41544 -22.79981 -22.14179 -21.63797 -20.93875 -20.29687 -18.94023 -18.27971 -17.50966 -17.31265 -16.82585 -16.23786 -16.01639 -15.88750 -15.57156 -15.16674 -14.67786 -14.59604 -14.51802 -14.41127 -14.22012 -14.06538 -13.85552 -13.58328 -13.02119 -12.72027 -12.66302 -12.35914 -12.19658 -11.95016 -11.87987 -11.66924 -11.37233 -11.06661 -10.94234 -10.88921 -10.45259 -10.31439 -10.01935 -9.83754 -9.69502 -9.34496 -9.27985 -9.22889 -8.92765 -8.69063 -8.55559 -6.06536 -4.05240 0.50257 0.71553 2.56648 2.95053 3.03776 3.29372 3.31663 3.38408 3.39245 3.43788 4.07681 4.13437 4.25339 4.35136 4.37801 4.44545 4.55163 4.69005 4.71774 4.74436 4.76449 4.86615 5.07650 5.15933 5.20706 5.27690 5.39252 5.42087 5.48439 5.57116 5.62986 5.69465 5.82175 5.98776 6.03808 6.09251 6.31907 6.37724 6.46966 6.61709 6.68745 6.82103 6.97438 7.07419 7.23612 7.36923 7.75669 8.06987 8.49853 8.67094 8.97162 9.55791 11.06640 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.001686 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.331641 B =16607.321827 C =17200.556563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.522 4.522 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.133 3.867 12 N -0.741 5.741 13 C 0.701 3.299 14 O -0.593 6.593 15 N -0.748 5.748 16 C 0.182 3.818 17 C -0.097 4.097 18 C -0.090 4.090 19 C -0.118 4.118 20 C 0.071 3.929 21 C 0.063 3.937 22 C -0.095 4.095 23 O -0.319 6.319 24 C 0.059 3.941 25 C -0.188 4.188 26 C 0.060 3.940 27 O -0.321 6.321 28 H 0.263 0.737 29 H 0.019 0.981 30 H 0.015 0.985 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.395 0.605 36 H 0.396 0.604 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.059 0.941 43 H 0.105 0.895 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.657 -27.717 -1.149 34.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.009 3.991 12 N -0.395 5.395 13 C 0.401 3.599 14 O -0.471 6.471 15 N -0.405 5.405 16 C 0.058 3.942 17 C -0.098 4.098 18 C -0.108 4.108 19 C -0.136 4.136 20 C 0.027 3.973 21 C 0.019 3.981 22 C -0.114 4.114 23 O -0.236 6.236 24 C -0.016 4.016 25 C -0.226 4.226 26 C -0.015 4.015 27 O -0.237 6.237 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.033 0.967 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.228 0.772 36 H 0.229 0.771 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.077 0.923 43 H 0.123 0.877 44 H 0.110 0.890 45 H 0.102 0.898 46 H 0.077 0.923 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 21.536 -26.790 -1.234 34.396 hybrid contribution -0.585 0.001 -0.073 0.589 sum 20.952 -26.789 -1.307 34.034 Atomic orbital electron populations 1.69911 1.06315 1.26955 1.51040 1.25032 0.94758 0.99260 0.94472 0.86772 0.80421 0.83491 0.78602 1.20244 1.21383 1.18850 1.21096 0.89330 0.94487 1.51068 0.91040 1.19502 0.97226 0.91484 0.96720 1.21706 0.90716 1.00993 1.01669 1.21522 0.95658 0.80024 1.01860 1.45329 1.04743 1.10108 1.79353 1.15990 0.83055 0.82912 0.77971 1.90928 1.55080 1.43148 1.57957 1.45140 1.07368 1.06431 1.81542 1.19966 0.81038 0.89602 1.03546 1.19840 1.01746 0.95595 0.92638 1.21092 0.98250 0.93363 0.98131 1.21125 1.00735 0.94519 0.97262 1.19234 1.01332 0.84200 0.92537 1.19121 1.02390 0.91382 0.85187 1.21073 0.98831 0.92568 0.98937 1.86388 1.45024 1.56220 1.35918 1.22654 0.89105 0.88630 1.01167 1.22479 1.04765 0.98911 0.96413 1.22661 0.89218 0.95798 0.93823 1.86391 1.39428 1.13424 1.84464 0.92709 0.96254 0.96698 0.92173 0.92149 0.91934 0.91946 0.77166 0.77085 0.90505 0.90378 0.84590 0.84480 0.84387 0.92287 0.87677 0.89005 0.89758 0.92299 0.87733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.67 13.96 55.43 0.77 -26.89 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.71 27.47 -169.99 -4.67 17.04 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 6 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 7 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.26 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.08 5.27 -26.73 -0.14 -2.22 16 11 C 0.13 2.19 5.67 -4.04 -0.02 2.17 16 12 N -0.74 -10.01 5.56 -65.22 -0.36 -10.37 16 13 C 0.70 10.00 8.57 -86.92 -0.74 9.25 16 14 O -0.59 -11.02 16.34 5.28 0.09 -10.94 16 15 N -0.75 -7.43 5.55 -66.41 -0.37 -7.80 16 16 C 0.18 1.65 5.79 -5.19 -0.03 1.62 16 17 C -0.10 -0.75 5.25 -104.58 -0.55 -1.30 16 18 C -0.09 -0.62 9.69 -39.54 -0.38 -1.00 16 19 C -0.12 -0.87 10.01 -39.46 -0.39 -1.26 16 20 C 0.07 0.63 5.73 -39.31 -0.23 0.41 16 21 C 0.06 0.58 5.73 -39.31 -0.23 0.35 16 22 C -0.10 -0.79 9.66 -39.46 -0.38 -1.17 16 23 O -0.32 -3.00 10.16 -36.68 -0.37 -3.37 16 24 C 0.06 0.35 6.51 36.68 0.24 0.59 16 25 C -0.19 -0.89 5.92 -27.69 -0.16 -1.05 16 26 C 0.06 0.33 6.51 36.68 0.24 0.57 16 27 O -0.32 -2.86 10.17 -36.70 -0.37 -3.24 16 28 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 30 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.40 4.20 8.49 -40.82 -0.35 3.86 16 36 H 0.40 2.96 8.48 -40.82 -0.35 2.62 16 37 H 0.08 0.75 8.08 -51.93 -0.42 0.33 16 38 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 39 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 40 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.63 16 42 H 0.06 0.31 7.93 -51.93 -0.41 -0.10 16 43 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 45 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.29 7.93 -51.93 -0.41 -0.13 16 47 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 388.82 15.07 5.86 5.86 Total: -1.00 -35.40 388.82 -10.11 -45.51 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.36 Total: 0.75 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: -3.33 Total: -6.56 kcal Atomic # 7 Polarization: -45.10 SS G_CDS: 0.04 Total: -45.06 kcal Atomic # 8 Polarization: -16.89 SS G_CDS: -0.66 Total: -17.55 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.67 Total: 17.04 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.40 -10.11 -45.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170882468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.381 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds