Wall clock time and date at job start Tue Mar 31 2020 21:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99795 * 2 1 4 4 H 1.48498 * 109.47136 * 269.99889 * 3 2 1 5 5 H 1.48503 * 109.47098 * 29.99956 * 3 2 1 6 6 H 1.48504 * 109.46915 * 149.99810 * 3 2 1 7 7 C 1.37875 * 120.00298 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99744 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00505 * 180.02562 * 7 2 1 10 10 C 1.52992 * 109.47554 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47321 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47198 * 179.97438 * 11 10 9 13 13 C 1.34777 * 120.00065 * 179.97438 * 12 11 10 14 14 O 1.21593 * 119.99923 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00128 * 180.02562 * 13 12 11 16 16 C 1.46498 * 119.99828 * 180.27942 * 15 13 12 17 17 C 1.50700 * 109.46769 * 179.72341 * 16 15 13 18 18 C 1.38258 * 119.88878 * 269.71717 * 17 16 15 19 19 C 1.38341 * 120.21318 * 179.75277 * 18 17 16 20 20 C 1.38461 * 119.71367 * 0.52219 * 19 18 17 21 21 C 1.38748 * 120.07128 * 359.76582 * 20 19 18 22 22 C 1.38338 * 119.89317 * 89.99873 * 17 16 15 23 23 O 1.36462 * 119.62140 * 179.97438 * 21 20 19 24 24 C 1.42911 * 115.92377 * 68.31697 * 23 21 20 25 25 C 1.52058 * 110.76796 * 275.60531 * 24 23 21 26 26 C 1.52067 * 112.37965 * 64.79413 * 25 24 23 27 27 O 1.36468 * 120.32079 * 179.74453 * 20 19 18 28 28 H 0.96997 * 120.00401 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46940 * 59.99282 * 9 7 2 30 30 H 1.08998 * 109.46562 * 300.00246 * 9 7 2 31 31 H 1.09000 * 109.47686 * 59.99613 * 10 9 7 32 32 H 1.09007 * 109.47129 * 299.99403 * 10 9 7 33 33 H 1.09000 * 109.47211 * 59.99132 * 11 10 9 34 34 H 1.09006 * 109.46815 * 299.99368 * 11 10 9 35 35 H 0.97000 * 120.00386 * 359.97438 * 12 11 10 36 36 H 0.97001 * 119.99727 * 359.97438 * 15 13 12 37 37 H 1.09004 * 109.46963 * 299.72135 * 16 15 13 38 38 H 1.08994 * 109.47567 * 59.72287 * 16 15 13 39 39 H 1.08004 * 119.89209 * 359.97438 * 18 17 16 40 40 H 1.08004 * 120.14551 * 180.24390 * 19 18 17 41 41 H 1.08000 * 120.14148 * 359.94803 * 22 17 16 42 42 H 1.08994 * 109.21896 * 35.93501 * 24 23 21 43 43 H 1.09003 * 109.21859 * 155.27570 * 24 23 21 44 44 H 1.09006 * 108.90522 * 185.54173 * 25 24 23 45 45 H 1.09002 * 108.90448 * 304.14595 * 25 24 23 46 46 H 1.09001 * 109.21100 * 55.50602 * 26 25 24 47 47 H 1.09000 * 109.21863 * 174.83875 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 -0.0014 11 6 5.5516 -2.6364 -0.0001 12 7 6.0400 -4.0176 -0.0009 13 6 7.3651 -4.2639 -0.0005 14 8 8.1552 -3.3397 0.0009 15 7 7.8144 -5.5346 -0.0017 16 6 9.2547 -5.8022 0.0048 17 6 9.4889 -7.2909 0.0088 18 6 9.5968 -7.9682 1.2093 19 6 9.8067 -9.3355 1.2208 20 6 9.9193 -10.0226 0.0240 21 6 9.8170 -9.3420 -1.1807 22 6 9.6010 -7.9744 -1.1887 23 8 9.9299 -10.0283 -2.3548 24 6 8.8645 -10.9322 -2.6551 25 6 9.0893 -12.2747 -1.9775 26 6 9.0499 -12.1716 -0.4609 27 8 10.1317 -11.3707 0.0209 28 1 -0.4850 0.8400 0.0004 29 1 3.8745 -0.6807 0.8905 30 1 3.8752 -0.6796 -0.8894 31 1 3.6586 -3.1494 -0.8920 32 1 3.6580 -3.1513 0.8880 33 1 5.9143 -2.1236 0.8907 34 1 5.9156 -2.1215 -0.8893 35 1 5.4097 -4.7550 -0.0016 36 1 7.1840 -6.2719 -0.0025 37 1 9.7095 -5.3652 -0.8842 38 1 9.7021 -5.3617 0.8958 39 1 9.5134 -7.4285 2.1412 40 1 9.8869 -9.8641 2.1592 41 1 9.5203 -7.4435 -2.1257 42 1 7.9238 -10.5069 -2.3054 43 1 8.8119 -11.0791 -3.7339 44 1 8.3153 -12.9693 -2.3044 45 1 10.0620 -12.6637 -2.2784 46 1 8.1056 -11.7203 -0.1564 47 1 9.1242 -13.1707 -0.0313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000170882468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:54 Heat of formation + Delta-G solvation = -114.420704 kcal Electronic energy + Delta-G solvation = -27341.427810 eV Core-core repulsion = 23295.438332 eV Total energy + Delta-G solvation = -4045.989477 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.94352 -41.00541 -39.06516 -38.51403 -37.07387 -35.74657 -35.11905 -33.85848 -33.21554 -31.87471 -30.73497 -28.91249 -27.69861 -26.45707 -24.47171 -23.92085 -22.58893 -22.29332 -22.22639 -21.77433 -19.60643 -19.25481 -18.88761 -18.06381 -17.91208 -17.32749 -16.88049 -16.45599 -16.40177 -16.32086 -15.87318 -15.71338 -15.27770 -15.15250 -15.05387 -14.97996 -14.89659 -14.72484 -14.08253 -13.98189 -13.76139 -13.46847 -13.27042 -12.90793 -12.73238 -12.69141 -12.64945 -12.17771 -11.91523 -11.81408 -11.76482 -11.56929 -11.40777 -11.34556 -11.29789 -10.96185 -10.74595 -10.38149 -9.91752 -9.75065 -9.52795 -8.27973 -6.31609 -0.09629 0.13945 1.38408 1.40062 1.51919 1.71119 2.16868 2.33806 2.37835 2.44809 2.79585 3.07900 3.41627 3.60095 3.68867 3.70302 3.86653 4.11445 4.13601 4.18578 4.20434 4.25576 4.28821 4.34760 4.37429 4.54313 4.59499 4.66665 4.70381 4.79464 4.91272 4.93652 4.95251 5.04876 5.06707 5.06934 5.24668 5.40264 5.41955 5.45206 5.53602 5.56075 5.59039 5.67023 6.01604 6.10417 6.29136 6.51142 6.76431 7.10979 7.33210 7.59088 8.88287 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.021186 B = 0.001686 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.331641 B =16607.321827 C =17200.556563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.285 1.285 6 H -0.247 1.247 7 C -0.529 4.529 8 H 0.038 0.962 9 C -0.013 4.013 10 C -0.099 4.099 11 C 0.147 3.853 12 N -0.732 5.732 13 C 0.700 3.300 14 O -0.637 6.637 15 N -0.728 5.728 16 C 0.186 3.814 17 C -0.094 4.094 18 C -0.083 4.083 19 C -0.119 4.119 20 C 0.060 3.940 21 C 0.049 3.951 22 C -0.099 4.099 23 O -0.343 6.343 24 C 0.050 3.950 25 C -0.184 4.184 26 C 0.051 3.949 27 O -0.341 6.341 28 H 0.266 0.734 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.411 0.589 36 H 0.410 0.590 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.154 0.846 40 H 0.153 0.847 41 H 0.139 0.861 42 H 0.064 0.936 43 H 0.119 0.881 44 H 0.119 0.881 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.798 -28.564 -0.773 35.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.051 4.051 10 C -0.137 4.137 11 C 0.022 3.978 12 N -0.388 5.388 13 C 0.400 3.600 14 O -0.519 6.519 15 N -0.385 5.385 16 C 0.062 3.938 17 C -0.095 4.095 18 C -0.102 4.102 19 C -0.137 4.137 20 C 0.016 3.984 21 C 0.005 3.995 22 C -0.118 4.118 23 O -0.260 6.260 24 C -0.024 4.024 25 C -0.221 4.221 26 C -0.023 4.023 27 O -0.259 6.259 28 H 0.074 0.926 29 H 0.040 0.960 30 H 0.038 0.962 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.247 0.753 36 H 0.247 0.753 37 H 0.087 0.913 38 H 0.096 0.904 39 H 0.172 0.828 40 H 0.171 0.829 41 H 0.157 0.843 42 H 0.082 0.918 43 H 0.137 0.863 44 H 0.137 0.863 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 22.672 -27.718 -0.861 35.820 hybrid contribution -0.980 0.102 -0.211 1.008 sum 21.692 -27.616 -1.073 35.133 Atomic orbital electron populations 1.70056 1.08193 1.28088 1.52773 1.25984 0.95599 1.03434 0.94287 0.85705 0.79556 0.78537 0.79159 1.19310 1.21092 1.17064 1.21469 0.91925 0.93237 1.50119 0.94373 1.19472 0.94025 0.94752 0.96861 1.21471 0.92032 0.98033 1.02162 1.21142 0.93943 0.81529 1.01191 1.45042 1.05039 1.09513 1.79187 1.16103 0.82677 0.83579 0.77690 1.90902 1.56141 1.44856 1.59989 1.44974 1.08196 1.05389 1.79954 1.19960 0.80174 0.90457 1.03215 1.19656 1.02368 0.94612 0.92860 1.21272 0.97176 0.93265 0.98466 1.21319 1.00232 0.94687 0.97454 1.19459 1.01479 0.84485 0.92950 1.19279 1.03115 0.91736 0.85401 1.21111 0.99045 0.92430 0.99260 1.86340 1.46499 1.56969 1.36179 1.22914 0.88509 0.88699 1.02285 1.22468 1.05105 0.98699 0.95877 1.22928 0.88668 0.96246 0.94414 1.86348 1.41033 1.13626 1.84850 0.92554 0.96028 0.96203 0.91733 0.91679 0.92665 0.92711 0.75315 0.75348 0.91268 0.90372 0.82802 0.82895 0.84323 0.91803 0.86261 0.86257 0.90857 0.91678 0.85864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.14 13.96 21.45 0.30 -58.84 16 2 C 0.00 0.22 5.47 84.65 0.46 0.68 16 3 Si 0.95 44.26 27.47 68.60 1.88 46.15 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -10.79 6.54 99.48 0.65 -10.14 16 7 C -0.53 -29.85 9.66 25.60 0.25 -29.60 16 8 H 0.04 2.33 7.99 -2.91 -0.02 2.31 16 9 C -0.01 -0.59 4.04 29.84 0.12 -0.47 16 10 C -0.10 -3.50 5.27 30.59 0.16 -3.34 16 11 C 0.15 4.60 5.67 86.38 0.49 5.09 16 12 N -0.73 -18.35 5.56 -478.52 -2.66 -21.01 16 13 C 0.70 18.84 8.57 179.05 1.53 20.38 16 14 O -0.64 -23.10 16.34 -4.01 -0.07 -23.17 16 15 N -0.73 -13.10 5.55 -482.30 -2.68 -15.78 16 16 C 0.19 3.10 5.79 85.63 0.50 3.60 16 17 C -0.09 -1.31 5.25 -19.84 -0.10 -1.42 16 18 C -0.08 -0.99 9.69 22.30 0.22 -0.77 16 19 C -0.12 -1.55 10.01 22.35 0.22 -1.32 16 20 C 0.06 1.02 5.73 22.44 0.13 1.15 16 21 C 0.05 0.87 5.73 22.45 0.13 1.00 16 22 C -0.10 -1.57 9.66 22.35 0.22 -1.36 16 23 O -0.34 -6.37 10.16 -84.10 -0.85 -7.22 16 24 C 0.05 0.54 6.51 71.67 0.47 1.01 16 25 C -0.18 -1.48 5.92 29.98 0.18 -1.30 16 26 C 0.05 0.49 6.51 71.67 0.47 0.96 16 27 O -0.34 -5.82 10.17 -84.17 -0.86 -6.68 16 28 H 0.27 15.46 8.31 -92.71 -0.77 14.68 16 29 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 30 H 0.02 0.88 7.57 -2.39 -0.02 0.86 16 31 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 33 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 35 H 0.41 7.72 8.49 -92.71 -0.79 6.94 16 36 H 0.41 5.14 8.48 -92.71 -0.79 4.35 16 37 H 0.07 1.30 8.08 -2.38 -0.02 1.28 16 38 H 0.08 1.35 8.08 -2.39 -0.02 1.33 16 39 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 40 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 41 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 42 H 0.06 0.61 7.93 -2.39 -0.02 0.59 16 43 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.12 0.28 8.14 -2.38 -0.02 0.26 16 45 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.06 0.53 7.93 -2.39 -0.02 0.51 16 47 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -77.04 388.82 -0.14 -77.17 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -0.64 Total: 15.10 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 5.43 Total: -5.72 kcal Atomic # 7 Polarization: -90.59 SS G_CDS: -5.04 Total: -95.63 kcal Atomic # 8 Polarization: -35.29 SS G_CDS: -1.78 Total: -37.07 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.15 kcal Total: -77.04 -0.14 -77.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000170882468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.246 kcal (2) G-P(sol) polarization free energy of solvation -77.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds