Wall clock time and date at job start Wed Apr 1 2020 00:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86797 * 120.00002 * 2 1 4 4 H 1.48504 * 109.46925 * 270.27825 * 3 2 1 5 5 H 1.48497 * 109.47064 * 30.27509 * 3 2 1 6 6 H 1.48500 * 109.47281 * 150.27749 * 3 2 1 7 7 C 1.38656 * 119.99579 * 180.27561 * 2 1 3 8 8 H 1.07996 * 120.00733 * 359.72756 * 7 2 1 9 9 O 1.34831 * 119.99347 * 179.72242 * 7 2 1 10 10 C 1.35758 * 116.99750 * 174.94702 * 9 7 2 11 11 C 1.38878 * 120.06717 * 185.26004 * 10 9 7 12 12 C 1.38103 * 119.92788 * 179.71762 * 11 10 9 13 13 C 1.38305 * 120.06873 * 0.55398 * 12 11 10 14 14 C 1.50696 * 119.93100 * 179.74134 * 13 12 11 15 15 N 1.46493 * 109.47243 * 269.97587 * 14 13 12 16 16 C 1.34786 * 119.99914 * 179.97438 * 15 14 13 17 17 O 1.21584 * 119.99655 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99852 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00019 * 179.97438 * 18 16 15 20 20 H 1.08997 * 109.47080 * 325.00963 * 19 18 16 21 21 C 1.53005 * 109.47025 * 85.00178 * 19 18 16 22 22 C 1.52998 * 109.47426 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.46890 * 300.00090 * 22 21 19 24 24 C 1.53001 * 109.47300 * 60.00082 * 23 22 21 25 25 C 1.52998 * 109.47082 * 299.99800 * 24 23 22 26 26 H 1.08994 * 109.47072 * 300.00185 * 25 24 23 27 27 O 1.42898 * 109.47136 * 179.97438 * 25 24 23 28 28 C 1.38304 * 120.13655 * 359.72291 * 13 12 11 29 29 C 1.38093 * 120.07129 * 359.97438 * 28 13 12 30 30 H 0.96997 * 120.00097 * 359.71916 * 1 2 3 31 31 H 1.07997 * 120.03493 * 359.97438 * 11 10 9 32 32 H 1.07994 * 119.96538 * 180.25395 * 12 11 10 33 33 H 1.09000 * 109.47118 * 29.98042 * 14 13 12 34 34 H 1.09003 * 109.46925 * 149.97958 * 14 13 12 35 35 H 0.96993 * 120.00398 * 0.02562 * 15 14 13 36 36 H 0.97007 * 120.00327 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.47299 * 300.00401 * 21 19 18 38 38 H 1.09006 * 109.46683 * 59.99877 * 21 19 18 39 39 H 1.09002 * 109.46876 * 60.00154 * 22 21 19 40 40 H 1.08996 * 109.47144 * 180.02562 * 22 21 19 41 41 H 1.09006 * 109.46944 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47758 * 300.00034 * 23 22 21 43 43 H 1.09002 * 109.47171 * 59.99504 * 24 23 22 44 44 H 1.09000 * 109.47440 * 179.97438 * 24 23 22 45 45 H 0.96701 * 113.99744 * 60.00731 * 27 25 24 46 46 H 1.08004 * 119.96521 * 179.97438 * 28 13 12 47 47 H 1.08005 * 120.03579 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4912 2.0498 -1.4001 5 1 1.4500 2.6509 0.7058 6 1 3.5501 1.4385 0.6941 7 6 2.0088 -1.2008 -0.0058 8 1 1.4689 -2.1361 -0.0058 9 8 3.3571 -1.2008 -0.0114 10 6 3.9739 -2.4059 0.0896 11 6 5.3566 -2.4728 0.2002 12 6 5.9806 -3.7000 0.3087 13 6 5.2309 -4.8621 0.2959 14 6 5.9155 -6.1999 0.4086 15 7 6.2502 -6.6916 -0.9301 16 6 6.8728 -7.8781 -1.0761 17 8 7.1562 -8.5404 -0.0967 18 7 7.1811 -8.3302 -2.3077 19 6 7.8583 -9.6195 -2.4665 20 1 8.5511 -9.7704 -1.6386 21 6 6.8201 -10.7434 -2.4738 22 6 7.5273 -12.0900 -2.6389 23 6 8.3006 -12.1014 -3.9590 24 6 9.3389 -10.9776 -3.9517 25 6 8.6317 -9.6310 -3.7866 26 1 7.9391 -9.4804 -4.6146 27 8 9.6014 -8.5815 -3.7792 28 6 3.8542 -4.7991 0.1801 29 6 3.2238 -3.5747 0.0775 30 1 -0.4850 0.8400 0.0041 31 1 5.9430 -1.5659 0.2055 32 1 7.0555 -3.7525 0.3989 33 1 6.8280 -6.0927 0.9951 34 1 5.2490 -6.9088 0.8999 35 1 6.0244 -6.1630 -1.7114 36 1 6.9554 -7.8015 -3.0891 37 1 6.2695 -10.7355 -1.5331 38 1 6.1272 -10.5925 -3.3016 39 1 8.2199 -12.2406 -1.8108 40 1 6.7876 -12.8906 -2.6446 41 1 8.8048 -13.0607 -4.0765 42 1 7.6081 -11.9508 -4.7872 43 1 10.0314 -11.1282 -3.1236 44 1 9.8901 -10.9860 -4.8920 45 1 10.1302 -8.5288 -4.5871 46 1 3.2714 -5.7083 0.1700 47 1 2.1486 -3.5261 -0.0124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171370075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:12 Heat of formation + Delta-G solvation = -98.268712 kcal Electronic energy + Delta-G solvation = -27755.272879 eV Core-core repulsion = 23709.983804 eV Total energy + Delta-G solvation = -4045.289074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = -5.00 seconds Orbital eigenvalues (eV) -40.41349 -39.37523 -38.82991 -37.02663 -35.97171 -34.41557 -34.21295 -32.46150 -30.62627 -30.34479 -30.04075 -28.76955 -25.97034 -24.50726 -23.18681 -22.50294 -22.15600 -20.77926 -20.57938 -20.42451 -18.39260 -17.95651 -17.64470 -17.36830 -16.87367 -15.48908 -15.39941 -15.05734 -14.94239 -14.73816 -14.43562 -14.24203 -14.11883 -13.93263 -13.85861 -13.64714 -13.33266 -13.15113 -13.10686 -12.76416 -12.66043 -12.25660 -12.06392 -11.91527 -11.65093 -11.46199 -11.28642 -11.12897 -10.92486 -10.84873 -10.74160 -10.64342 -10.42398 -10.20881 -10.06381 -9.47177 -9.24863 -8.94411 -8.73772 -8.35717 -7.46547 -6.48954 -4.15920 1.94431 2.04792 2.82819 3.18392 3.20973 3.29123 3.35454 3.66736 4.16057 4.17522 4.23725 4.41940 4.51131 4.56323 4.73213 4.75658 4.76040 4.90227 5.00068 5.02742 5.03858 5.18441 5.27550 5.40320 5.44972 5.56249 5.59346 5.61641 5.66923 5.72201 5.77811 5.88554 5.91926 5.99868 6.05071 6.27585 6.43860 6.47946 6.61921 6.70073 6.88003 7.02267 7.15329 7.21311 7.22551 7.51741 7.71889 7.95439 8.08730 8.67865 8.85641 9.46601 10.58235 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.001837 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.633144 B =15237.415874 C =15391.514390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.391 4.391 8 H 0.108 0.892 9 O -0.214 6.214 10 C 0.166 3.834 11 C -0.195 4.195 12 C -0.055 4.055 13 C -0.204 4.204 14 C 0.197 3.803 15 N -0.738 5.738 16 C 0.704 3.296 17 O -0.598 6.598 18 N -0.739 5.739 19 C 0.175 3.825 20 H 0.093 0.907 21 C -0.130 4.130 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.149 4.149 25 C 0.098 3.902 26 H 0.059 0.941 27 O -0.560 6.560 28 C -0.052 4.052 29 C -0.224 4.224 30 H 0.280 0.720 31 H 0.118 0.882 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.397 0.603 36 H 0.395 0.605 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.377 0.623 46 H 0.111 0.889 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.453 -20.880 -9.976 28.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.466 4.466 8 H 0.125 0.875 9 O -0.118 6.118 10 C 0.113 3.887 11 C -0.215 4.215 12 C -0.074 4.074 13 C -0.205 4.205 14 C 0.074 3.926 15 N -0.393 5.393 16 C 0.404 3.596 17 O -0.477 6.477 18 N -0.393 5.393 19 C 0.069 3.931 20 H 0.111 0.889 21 C -0.169 4.169 22 C -0.158 4.158 23 C -0.157 4.157 24 C -0.187 4.187 25 C 0.038 3.962 26 H 0.077 0.923 27 O -0.365 6.365 28 C -0.071 4.071 29 C -0.244 4.244 30 H 0.091 0.909 31 H 0.136 0.864 32 H 0.133 0.867 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.230 0.770 36 H 0.229 0.771 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.224 0.776 46 H 0.129 0.871 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 16.317 -20.992 -8.454 27.899 hybrid contribution 0.043 1.102 -1.375 1.763 sum 16.360 -19.890 -9.829 27.566 Atomic orbital electron populations 1.69645 1.05588 1.28638 1.47444 1.24494 0.95055 0.98925 0.95517 0.86166 0.80351 0.81336 0.78988 1.19836 1.20729 1.18307 1.20787 0.76780 0.96710 1.52359 0.87508 1.83576 1.22739 1.25820 1.79669 1.19187 0.91733 0.85497 0.92249 1.20214 0.91926 0.97921 1.11392 1.20554 0.98467 0.91216 0.97187 1.19310 0.93719 0.93532 1.13986 1.19826 0.98647 0.91872 0.82273 1.45451 1.63423 1.20303 1.10156 1.15981 0.78603 0.81541 0.83481 1.90896 1.60286 1.58659 1.37821 1.45010 1.64766 1.22574 1.06973 1.20715 0.93040 0.82323 0.96985 0.88922 1.21962 0.98020 0.93670 1.03206 1.21541 0.99585 0.97030 0.97637 1.21531 0.97724 0.98301 0.98146 1.22241 0.98906 0.94722 1.02851 1.22086 0.90006 0.86830 0.97257 0.92310 1.86616 1.52499 1.53344 1.44026 1.20707 0.93389 0.96825 0.96154 1.21279 1.01217 0.91771 1.10100 0.90934 0.86385 0.86736 0.91689 0.91679 0.76952 0.77137 0.90408 0.91653 0.91431 0.91334 0.91421 0.91703 0.90700 0.91265 0.77588 0.87095 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.80 13.96 55.48 0.77 -24.02 16 2 C 0.06 1.76 5.49 -17.51 -0.10 1.66 16 3 Si 0.91 21.22 28.62 -169.99 -4.86 16.35 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.26 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.39 -10.73 9.95 30.89 0.31 -10.43 16 8 H 0.11 2.99 5.44 -52.49 -0.29 2.70 16 9 O -0.21 -5.47 8.59 0.02 0.00 -5.47 16 10 C 0.17 3.68 6.65 -39.11 -0.26 3.42 16 11 C -0.20 -3.69 9.99 -39.39 -0.39 -4.08 16 12 C -0.06 -0.89 9.69 -39.61 -0.38 -1.28 16 13 C -0.20 -3.20 5.25 -104.58 -0.55 -3.75 16 14 C 0.20 2.79 5.79 -5.20 -0.03 2.76 16 15 N -0.74 -9.48 5.55 -66.42 -0.37 -9.84 16 16 C 0.70 9.81 8.53 -86.91 -0.74 9.06 16 17 O -0.60 -10.54 16.01 5.29 0.08 -10.46 16 18 N -0.74 -7.78 4.95 -58.67 -0.29 -8.07 16 19 C 0.18 1.66 2.14 -67.93 -0.15 1.52 16 20 H 0.09 1.14 7.58 -51.93 -0.39 0.74 16 21 C -0.13 -1.08 5.49 -26.73 -0.15 -1.22 16 22 C -0.12 -0.77 5.92 -26.73 -0.16 -0.93 16 23 C -0.12 -0.60 5.92 -26.73 -0.16 -0.75 16 24 C -0.15 -0.79 5.54 -26.73 -0.15 -0.94 16 25 C 0.10 0.67 2.99 -26.73 -0.08 0.59 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 O -0.56 -4.39 13.18 -35.23 -0.46 -4.85 16 28 C -0.05 -0.89 9.69 -39.61 -0.38 -1.27 16 29 C -0.22 -4.61 9.17 -39.40 -0.36 -4.97 16 30 H 0.28 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.12 2.09 8.06 -52.49 -0.42 1.67 16 32 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.40 4.46 8.48 -40.82 -0.35 4.11 16 36 H 0.40 3.33 8.62 -40.82 -0.35 2.98 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 42 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.38 1.34 9.08 45.56 0.41 1.75 16 46 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 47 H 0.13 2.91 5.64 -52.48 -0.30 2.61 16 LS Contribution 387.16 15.07 5.83 5.83 Total: -1.00 -32.31 387.16 -9.33 -41.64 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -6.31 Total: 9.50 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.73 Total: -10.61 kcal Atomic # 7 Polarization: -42.05 SS G_CDS: 0.12 Total: -41.93 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.38 Total: -20.79 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.86 Total: 16.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -32.31 -9.33 -41.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171370075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.625 kcal (2) G-P(sol) polarization free energy of solvation -32.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -5.00 seconds