Wall clock time and date at job start Wed Apr 1 2020 00:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31562 * 1 3 3 Si 1.86797 * 120.00002 * 2 1 4 4 H 1.48504 * 109.46925 * 270.27825 * 3 2 1 5 5 H 1.48497 * 109.47064 * 30.27509 * 3 2 1 6 6 H 1.48500 * 109.47281 * 150.27749 * 3 2 1 7 7 C 1.38656 * 119.99579 * 180.27561 * 2 1 3 8 8 H 1.07996 * 120.00733 * 359.72756 * 7 2 1 9 9 O 1.34831 * 119.99347 * 179.72242 * 7 2 1 10 10 C 1.35758 * 116.99750 * 174.94702 * 9 7 2 11 11 C 1.38878 * 120.06717 * 185.26004 * 10 9 7 12 12 C 1.38103 * 119.92788 * 179.71762 * 11 10 9 13 13 C 1.38305 * 120.06873 * 0.55398 * 12 11 10 14 14 C 1.50696 * 119.93100 * 179.74134 * 13 12 11 15 15 N 1.46493 * 109.47243 * 269.97587 * 14 13 12 16 16 C 1.34786 * 119.99914 * 179.97438 * 15 14 13 17 17 O 1.21584 * 119.99655 * 0.02562 * 16 15 14 18 18 N 1.34772 * 119.99852 * 180.02562 * 16 15 14 19 19 C 1.46499 * 120.00019 * 179.97438 * 18 16 15 20 20 H 1.08997 * 109.47080 * 325.00963 * 19 18 16 21 21 C 1.53005 * 109.47025 * 85.00178 * 19 18 16 22 22 C 1.52998 * 109.47426 * 180.02562 * 21 19 18 23 23 C 1.52999 * 109.46890 * 300.00090 * 22 21 19 24 24 C 1.53001 * 109.47300 * 60.00082 * 23 22 21 25 25 C 1.52998 * 109.47082 * 299.99800 * 24 23 22 26 26 H 1.08994 * 109.47072 * 300.00185 * 25 24 23 27 27 O 1.42898 * 109.47136 * 179.97438 * 25 24 23 28 28 C 1.38304 * 120.13655 * 359.72291 * 13 12 11 29 29 C 1.38093 * 120.07129 * 359.97438 * 28 13 12 30 30 H 0.96997 * 120.00097 * 359.71916 * 1 2 3 31 31 H 1.07997 * 120.03493 * 359.97438 * 11 10 9 32 32 H 1.07994 * 119.96538 * 180.25395 * 12 11 10 33 33 H 1.09000 * 109.47118 * 29.98042 * 14 13 12 34 34 H 1.09003 * 109.46925 * 149.97958 * 14 13 12 35 35 H 0.96993 * 120.00398 * 0.02562 * 15 14 13 36 36 H 0.97007 * 120.00327 * 0.02562 * 18 16 15 37 37 H 1.09000 * 109.47299 * 300.00401 * 21 19 18 38 38 H 1.09006 * 109.46683 * 59.99877 * 21 19 18 39 39 H 1.09002 * 109.46876 * 60.00154 * 22 21 19 40 40 H 1.08996 * 109.47144 * 180.02562 * 22 21 19 41 41 H 1.09006 * 109.46944 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47758 * 300.00034 * 23 22 21 43 43 H 1.09002 * 109.47171 * 59.99504 * 24 23 22 44 44 H 1.09000 * 109.47440 * 179.97438 * 24 23 22 45 45 H 0.96701 * 113.99744 * 60.00731 * 27 25 24 46 46 H 1.08004 * 119.96521 * 179.97438 * 28 13 12 47 47 H 1.08005 * 120.03579 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4912 2.0498 -1.4001 5 1 1.4500 2.6509 0.7058 6 1 3.5501 1.4385 0.6941 7 6 2.0088 -1.2008 -0.0058 8 1 1.4689 -2.1361 -0.0058 9 8 3.3571 -1.2008 -0.0114 10 6 3.9739 -2.4059 0.0896 11 6 5.3566 -2.4728 0.2002 12 6 5.9806 -3.7000 0.3087 13 6 5.2309 -4.8621 0.2959 14 6 5.9155 -6.1999 0.4086 15 7 6.2502 -6.6916 -0.9301 16 6 6.8728 -7.8781 -1.0761 17 8 7.1562 -8.5404 -0.0967 18 7 7.1811 -8.3302 -2.3077 19 6 7.8583 -9.6195 -2.4665 20 1 8.5511 -9.7704 -1.6386 21 6 6.8201 -10.7434 -2.4738 22 6 7.5273 -12.0900 -2.6389 23 6 8.3006 -12.1014 -3.9590 24 6 9.3389 -10.9776 -3.9517 25 6 8.6317 -9.6310 -3.7866 26 1 7.9391 -9.4804 -4.6146 27 8 9.6014 -8.5815 -3.7792 28 6 3.8542 -4.7991 0.1801 29 6 3.2238 -3.5747 0.0775 30 1 -0.4850 0.8400 0.0041 31 1 5.9430 -1.5659 0.2055 32 1 7.0555 -3.7525 0.3989 33 1 6.8280 -6.0927 0.9951 34 1 5.2490 -6.9088 0.8999 35 1 6.0244 -6.1630 -1.7114 36 1 6.9554 -7.8015 -3.0891 37 1 6.2695 -10.7355 -1.5331 38 1 6.1272 -10.5925 -3.3016 39 1 8.2199 -12.2406 -1.8108 40 1 6.7876 -12.8906 -2.6446 41 1 8.8048 -13.0607 -4.0765 42 1 7.6081 -11.9508 -4.7872 43 1 10.0314 -11.1282 -3.1236 44 1 9.8901 -10.9860 -4.8920 45 1 10.1302 -8.5288 -4.5871 46 1 3.2714 -5.7083 0.1700 47 1 2.1486 -3.5261 -0.0124 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171370075.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:44 Heat of formation + Delta-G solvation = -122.290625 kcal Electronic energy + Delta-G solvation = -27756.314547 eV Core-core repulsion = 23709.983804 eV Total energy + Delta-G solvation = -4046.330743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 21.14 seconds Orbital eigenvalues (eV) -41.37851 -40.89523 -39.71746 -38.59020 -36.54455 -35.61542 -35.16255 -34.43601 -31.91209 -31.68007 -30.80164 -29.61478 -27.67068 -25.99801 -23.81769 -23.71576 -23.15039 -22.07184 -21.78571 -21.03819 -19.86354 -19.39595 -19.07042 -18.18440 -17.79910 -16.81012 -16.44801 -16.28217 -16.19822 -15.77510 -15.68256 -15.49511 -15.41558 -15.10476 -14.74875 -14.70500 -14.47849 -14.29278 -14.23974 -14.05937 -13.72110 -13.69124 -13.28244 -13.10582 -12.59696 -12.55862 -12.47480 -12.31512 -12.23583 -11.94039 -11.79282 -11.63198 -11.45676 -11.30617 -11.16342 -10.91873 -10.79397 -10.31850 -9.85150 -9.72129 -9.11110 -8.50925 -6.23993 0.46616 0.53989 1.32442 1.35876 1.52060 1.81240 2.19276 2.27455 2.74314 2.99550 3.13266 3.16107 3.41826 3.70616 3.84883 3.92688 4.00918 4.03720 4.13582 4.20445 4.22264 4.35568 4.41423 4.44094 4.48485 4.53880 4.71685 4.80127 4.80725 4.91833 4.95025 5.05132 5.13384 5.14049 5.21695 5.23843 5.30712 5.33018 5.45493 5.49149 5.53864 5.60212 5.70615 5.78371 5.87624 6.03267 6.18701 6.83076 6.90705 7.11676 7.55862 7.61594 8.60252 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.025388 B = 0.001837 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.633144 B =15237.415874 C =15391.514390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.010 3.990 3 Si 0.971 3.029 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.262 1.262 7 C -0.399 4.399 8 H 0.083 0.917 9 O -0.242 6.242 10 C 0.130 3.870 11 C -0.191 4.191 12 C -0.045 4.045 13 C -0.172 4.172 14 C 0.202 3.798 15 N -0.731 5.731 16 C 0.701 3.299 17 O -0.638 6.638 18 N -0.726 5.726 19 C 0.170 3.830 20 H 0.059 0.941 21 C -0.124 4.124 22 C -0.119 4.119 23 C -0.115 4.115 24 C -0.145 4.145 25 C 0.104 3.896 26 H 0.079 0.921 27 O -0.582 6.582 28 C -0.049 4.049 29 C -0.237 4.237 30 H 0.285 0.715 31 H 0.131 0.869 32 H 0.152 0.848 33 H 0.070 0.930 34 H 0.064 0.936 35 H 0.407 0.593 36 H 0.408 0.592 37 H 0.048 0.952 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.092 0.908 45 H 0.396 0.604 46 H 0.134 0.866 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.190 -22.183 -11.559 31.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.189 4.189 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.101 0.899 9 O -0.149 6.149 10 C 0.080 3.920 11 C -0.210 4.210 12 C -0.063 4.063 13 C -0.173 4.173 14 C 0.079 3.921 15 N -0.386 5.386 16 C 0.401 3.599 17 O -0.520 6.520 18 N -0.380 5.380 19 C 0.065 3.935 20 H 0.077 0.923 21 C -0.163 4.163 22 C -0.157 4.157 23 C -0.153 4.153 24 C -0.183 4.183 25 C 0.045 3.955 26 H 0.097 0.903 27 O -0.391 6.391 28 C -0.067 4.067 29 C -0.257 4.257 30 H 0.095 0.905 31 H 0.149 0.851 32 H 0.169 0.831 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.243 0.757 36 H 0.244 0.756 37 H 0.067 0.933 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.110 0.890 45 H 0.246 0.754 46 H 0.151 0.849 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 19.091 -22.329 -10.095 31.063 hybrid contribution -0.585 1.157 -0.867 1.560 sum 18.506 -21.172 -10.962 30.181 Atomic orbital electron populations 1.69729 1.06911 1.29642 1.49862 1.25296 0.95888 1.02212 0.95476 0.85211 0.78810 0.77391 0.79298 1.18998 1.19411 1.18618 1.20713 0.78015 0.96168 1.52671 0.89942 1.83524 1.21311 1.27473 1.82576 1.19732 0.93215 0.85064 0.93996 1.20503 0.90500 0.99737 1.10288 1.20937 1.00267 0.89937 0.95169 1.19524 0.93024 0.94472 1.10315 1.19714 0.98677 0.90623 0.83095 1.45204 1.63237 1.20216 1.09988 1.16122 0.78479 0.81402 0.83933 1.90875 1.61900 1.59769 1.39417 1.44947 1.63811 1.22973 1.06305 1.20840 0.93020 0.82052 0.97593 0.92267 1.21885 0.97834 0.94398 1.02169 1.21543 0.99654 0.96079 0.98422 1.21520 0.97687 0.98766 0.97288 1.22221 0.98768 0.93873 1.03453 1.22045 0.90151 0.87510 0.95835 0.90322 1.86561 1.53068 1.53695 1.45756 1.20910 0.94324 0.96253 0.95239 1.21266 1.00323 0.92979 1.11101 0.90550 0.85079 0.83076 0.91148 0.91720 0.75744 0.75630 0.93331 0.90229 0.92609 0.90463 0.90261 0.90462 0.92111 0.88988 0.75400 0.84854 0.87168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.28 13.96 21.61 0.30 -53.97 16 2 C 0.01 0.57 5.49 84.83 0.47 1.04 16 3 Si 0.97 44.63 28.62 68.60 1.96 46.59 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 6 H -0.26 -11.99 7.11 99.48 0.71 -11.29 16 7 C -0.40 -23.03 9.95 67.92 0.68 -22.35 16 8 H 0.08 4.98 5.44 -2.91 -0.02 4.96 16 9 O -0.24 -12.75 8.59 -22.84 -0.20 -12.95 16 10 C 0.13 5.80 6.65 22.58 0.15 5.95 16 11 C -0.19 -6.88 9.99 22.39 0.22 -6.65 16 12 C -0.04 -1.29 9.69 22.25 0.22 -1.07 16 13 C -0.17 -4.89 5.25 -19.83 -0.10 -5.00 16 14 C 0.20 5.14 5.79 85.63 0.50 5.64 16 15 N -0.73 -16.85 5.55 -482.31 -2.68 -19.53 16 16 C 0.70 18.47 8.53 179.05 1.53 19.99 16 17 O -0.64 -22.17 16.01 -3.98 -0.06 -22.23 16 18 N -0.73 -14.07 4.95 -457.81 -2.27 -16.34 16 19 C 0.17 3.06 2.14 44.99 0.10 3.15 16 20 H 0.06 1.48 7.58 -2.39 -0.02 1.46 16 21 C -0.12 -1.93 5.49 30.60 0.17 -1.77 16 22 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 23 C -0.12 -0.83 5.92 30.59 0.18 -0.65 16 24 C -0.14 -1.17 5.54 30.59 0.17 -1.00 16 25 C 0.10 1.16 2.99 30.59 0.09 1.25 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 O -0.58 -7.77 13.18 -148.98 -1.96 -9.73 16 28 C -0.05 -1.59 9.69 22.25 0.22 -1.38 16 29 C -0.24 -9.95 9.17 22.39 0.21 -9.74 16 30 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 31 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 32 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 33 H 0.07 1.80 8.08 -2.39 -0.02 1.78 16 34 H 0.06 1.72 8.08 -2.39 -0.02 1.70 16 35 H 0.41 7.87 8.48 -92.71 -0.79 7.08 16 36 H 0.41 5.83 8.62 -92.70 -0.80 5.03 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.08 0.43 8.14 -2.38 -0.02 0.42 16 42 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 44 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 45 H 0.40 1.69 9.08 -74.06 -0.67 1.02 16 46 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 47 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16 Total: -1.00 -73.89 387.16 -1.18 -75.07 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: -1.24 Total: 26.87 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 4.96 Total: -13.78 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -4.64 Total: -89.85 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -2.22 Total: -44.91 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 1.96 Total: 46.59 kcal Total: -73.89 -1.18 -75.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171370075.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.218 kcal (2) G-P(sol) polarization free energy of solvation -73.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.15 seconds