Wall clock time and date at job start Tue Mar 31 2020 21:23:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99831 * 2 1 4 4 H 1.48492 * 109.47116 * 240.00186 * 3 2 1 5 5 H 1.48499 * 109.46795 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47220 * 120.00003 * 3 2 1 7 7 C 1.37877 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47053 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47203 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00210 * 180.02562 * 12 11 10 14 14 O 1.21583 * 119.99817 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00250 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00453 * 180.02562 * 15 13 12 17 17 C 1.52994 * 109.47447 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47125 * 179.97438 * 17 16 15 19 19 C 1.38255 * 119.94670 * 89.99827 * 18 17 16 20 20 C 1.38196 * 120.11173 * 180.31458 * 19 18 17 21 21 C 1.38702 * 120.06979 * 359.51950 * 20 19 18 22 22 C 1.38976 * 119.81854 * 0.36316 * 21 20 19 23 23 C 1.38201 * 119.94410 * 269.97635 * 18 17 16 24 24 O 1.36106 * 120.78195 * 180.02562 * 22 21 20 25 25 C 1.43170 * 116.71819 * 342.81004 * 24 22 21 26 26 C 1.53473 * 108.24794 * 46.16489 * 25 24 22 27 27 O 1.36101 * 119.39791 * 180.02562 * 21 20 19 28 28 H 0.96993 * 120.00202 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46770 * 60.00330 * 9 7 2 30 30 H 1.09001 * 109.47493 * 300.00861 * 9 7 2 31 31 H 1.08996 * 109.47397 * 60.00651 * 10 9 7 32 32 H 1.08997 * 109.47345 * 300.00021 * 10 9 7 33 33 H 1.09002 * 109.47378 * 59.99980 * 11 10 9 34 34 H 1.09011 * 109.46649 * 300.00064 * 11 10 9 35 35 H 0.97007 * 120.00079 * 359.97438 * 12 11 10 36 36 H 0.97007 * 120.00039 * 359.97438 * 15 13 12 37 37 H 1.08997 * 109.47389 * 59.99242 * 16 15 13 38 38 H 1.09005 * 109.46295 * 299.99617 * 16 15 13 39 39 H 1.08997 * 109.47396 * 59.99307 * 17 16 15 40 40 H 1.09005 * 109.47110 * 299.99178 * 17 16 15 41 41 H 1.08002 * 119.93919 * 0.02892 * 19 18 17 42 42 H 1.07998 * 119.96440 * 179.75357 * 20 19 18 43 43 H 1.08008 * 119.96288 * 359.96279 * 23 18 17 44 44 H 1.09002 * 109.70738 * 165.84852 * 25 24 22 45 45 H 1.08992 * 109.70951 * 286.47831 * 25 24 22 46 46 H 1.08997 * 109.71202 * 59.95098 * 26 25 24 47 47 H 1.09000 * 109.70748 * 180.57584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 7 2.4326 -6.1005 -0.0006 13 6 1.9834 -7.3712 -0.0015 14 8 0.7881 -7.5935 -0.0024 15 7 2.8592 -8.3956 -0.0004 16 6 2.3711 -9.7768 -0.0020 17 6 3.5611 -10.7384 -0.0009 18 6 3.0588 -12.1592 -0.0019 19 6 2.8301 -12.8096 -1.2004 20 6 2.3634 -14.1103 -1.2053 21 6 2.1325 -14.7704 -0.0074 22 6 2.3647 -14.1175 1.1973 23 6 2.8280 -12.8102 1.1951 24 8 2.1453 -14.7466 2.3841 25 6 1.3302 -15.9231 2.3480 26 6 1.8066 -16.8022 1.1837 27 8 1.6733 -16.0514 -0.0282 28 1 -0.4850 0.8400 0.0004 29 1 0.6243 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8721 -3.6043 0.8895 32 1 2.8722 -3.6042 -0.8905 33 1 0.8542 -5.0446 -0.8914 34 1 0.8536 -5.0450 0.8887 35 1 3.3863 -5.9232 -0.0002 36 1 3.8130 -8.2183 0.0007 37 1 1.7670 -9.9478 -0.8931 38 1 1.7639 -9.9485 0.8869 39 1 4.1654 -10.5676 0.8899 40 1 4.1678 -10.5666 -0.8901 41 1 3.0122 -12.2986 -2.1342 42 1 2.1817 -14.6147 -2.1428 43 1 3.0084 -12.3002 2.1300 44 1 1.4310 -16.4691 3.2860 45 1 0.2879 -15.6435 2.1949 46 1 2.8507 -17.0766 1.3335 47 1 1.1939 -17.7020 1.1279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171726414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:39 Heat of formation + Delta-G solvation = -97.614366 kcal Electronic energy + Delta-G solvation = -26666.195666 eV Core-core repulsion = 22620.934967 eV Total energy + Delta-G solvation = -4045.260700 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 5.72 seconds Orbital eigenvalues (eV) -41.67343 -39.80703 -38.62000 -37.67959 -35.84622 -34.95179 -33.31789 -32.64179 -31.36764 -31.05860 -29.91906 -28.00865 -26.50024 -25.14981 -23.76225 -22.99180 -22.47495 -20.96005 -20.71452 -20.31734 -19.02274 -18.05701 -17.70677 -17.52206 -16.55908 -16.01081 -15.87618 -15.78200 -15.48471 -14.97905 -14.84872 -14.75615 -14.52283 -14.31965 -14.27679 -14.19190 -13.85441 -13.49674 -13.41527 -12.58536 -12.33281 -12.25156 -12.10876 -11.80288 -11.78240 -11.57243 -11.44840 -11.30585 -10.91536 -10.86444 -10.69112 -10.60172 -10.07606 -9.82749 -9.41568 -9.17434 -9.11387 -9.01010 -8.55922 -8.42139 -8.34786 -5.99491 -4.02685 0.84218 0.91020 2.53346 2.74048 2.87046 3.28577 3.33480 3.38255 3.40147 3.42090 3.71596 4.18284 4.27318 4.30834 4.39142 4.46308 4.55159 4.61127 4.74366 4.76282 4.90339 4.93076 4.97939 5.05951 5.26808 5.36111 5.42510 5.66246 5.70269 5.71449 5.76510 5.82450 5.85177 6.14288 6.21930 6.23467 6.44224 6.46730 6.56932 6.65759 6.84188 6.97199 7.05510 7.11101 7.66125 7.79488 7.99395 8.19324 8.40345 8.79930 9.03815 9.61307 11.11737 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.001350 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.021153 B =20736.698527 C =20904.235012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.135 3.865 12 N -0.742 5.742 13 C 0.699 3.301 14 O -0.593 6.593 15 N -0.753 5.753 16 C 0.144 3.856 17 C -0.088 4.088 18 C -0.075 4.075 19 C -0.107 4.107 20 C -0.111 4.111 21 C 0.046 3.954 22 C 0.051 3.949 23 C -0.106 4.106 24 O -0.307 6.307 25 C 0.020 3.980 26 C 0.021 3.979 27 O -0.308 6.308 28 H 0.261 0.739 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.394 0.606 36 H 0.395 0.605 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.136 0.864 44 H 0.122 0.878 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -36.488 1.557 37.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.012 3.988 12 N -0.396 5.396 13 C 0.399 3.601 14 O -0.471 6.471 15 N -0.410 5.410 16 C 0.020 3.980 17 C -0.125 4.125 18 C -0.075 4.075 19 C -0.125 4.125 20 C -0.129 4.129 21 C 0.001 3.999 22 C 0.007 3.993 23 C -0.124 4.124 24 O -0.222 6.222 25 C -0.056 4.056 26 C -0.055 4.055 27 O -0.223 6.223 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.227 0.773 36 H 0.228 0.772 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.152 0.848 42 H 0.153 0.847 43 H 0.154 0.846 44 H 0.140 0.860 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.620 -36.610 1.594 37.429 hybrid contribution 1.224 0.824 0.165 1.485 sum 8.845 -35.786 1.759 36.905 Atomic orbital electron populations 1.69953 1.06050 1.26773 1.50467 1.25023 0.94846 0.99255 0.95283 0.86646 0.79559 0.83140 0.78559 1.20268 1.21278 1.20266 1.21172 0.92948 0.90979 1.51060 0.92714 1.19026 0.93868 0.90796 0.97705 1.21889 0.99783 0.93353 1.00804 1.21509 0.91310 0.84155 1.01876 1.45385 1.10422 1.04463 1.79371 1.16011 0.85296 0.80780 0.78018 1.90925 1.14185 1.84138 1.57824 1.45106 1.08930 1.05309 1.81655 1.21106 0.95413 0.78687 1.02807 1.20742 0.97665 0.90129 1.04006 1.19372 1.00458 0.95516 0.92204 1.20864 0.99803 0.93757 0.98081 1.20428 1.01436 0.95152 0.95926 1.18924 1.02370 0.84987 0.93589 1.18849 1.03342 0.93134 0.84024 1.20331 1.02149 0.90954 0.99009 1.86317 1.67646 1.40614 1.27625 1.23644 0.95072 0.85821 1.01020 1.23634 1.03230 0.94830 0.83808 1.86315 1.78419 1.21831 1.35727 0.92885 0.96228 0.96242 0.92775 0.92777 0.91970 0.91986 0.77337 0.77208 0.91445 0.91515 0.90018 0.89844 0.84753 0.84676 0.84608 0.85993 0.90335 0.90478 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.92 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.06 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 11 C 0.13 2.44 5.67 -4.04 -0.02 2.42 16 12 N -0.74 -10.88 5.56 -65.22 -0.36 -11.24 16 13 C 0.70 10.85 8.57 -86.92 -0.74 10.11 16 14 O -0.59 -11.98 16.34 5.29 0.09 -11.89 16 15 N -0.75 -7.97 5.56 -65.23 -0.36 -8.34 16 16 C 0.14 1.40 5.66 -4.04 -0.02 1.38 16 17 C -0.09 -0.56 5.46 -27.89 -0.15 -0.72 16 18 C -0.07 -0.58 5.13 -104.63 -0.54 -1.12 16 19 C -0.11 -0.80 9.69 -39.59 -0.38 -1.18 16 20 C -0.11 -0.91 9.96 -39.43 -0.39 -1.30 16 21 C 0.05 0.43 6.49 -39.14 -0.25 0.18 16 22 C 0.05 0.49 6.49 -39.14 -0.25 0.24 16 23 C -0.11 -0.93 9.61 -39.42 -0.38 -1.30 16 24 O -0.31 -2.75 10.42 -32.86 -0.34 -3.09 16 25 C 0.02 0.10 7.26 37.40 0.27 0.38 16 26 C 0.02 0.10 7.26 37.40 0.27 0.37 16 27 O -0.31 -2.65 10.42 -32.85 -0.34 -2.99 16 28 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.06 1.20 8.14 -51.92 -0.42 0.78 16 35 H 0.39 4.50 8.49 -40.82 -0.35 4.15 16 36 H 0.39 2.86 8.49 -40.82 -0.35 2.52 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 40 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 41 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 42 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 43 H 0.14 1.06 8.06 -52.48 -0.42 0.63 16 44 H 0.12 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.12 0.24 8.14 -51.93 -0.42 -0.18 16 LS Contribution 395.58 15.07 5.96 5.96 Total: -1.00 -36.20 395.58 -10.35 -46.56 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -7.42 Total: 0.75 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.29 Total: -6.04 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.01 Total: -45.76 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.60 Total: -17.97 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.20 -10.35 -46.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171726414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.057 kcal (2) G-P(sol) polarization free energy of solvation -36.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.72 seconds