Wall clock time and date at job start Tue Mar 31 2020 21:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86809 * 119.99831 * 2 1 4 4 H 1.48492 * 109.47116 * 240.00186 * 3 2 1 5 5 H 1.48499 * 109.46795 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47220 * 120.00003 * 3 2 1 7 7 C 1.37877 * 120.00407 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00135 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47216 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47053 * 180.02562 * 10 9 7 12 12 N 1.46495 * 109.47203 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00210 * 180.02562 * 12 11 10 14 14 O 1.21583 * 119.99817 * 359.97438 * 13 12 11 15 15 N 1.34772 * 120.00250 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00453 * 180.02562 * 15 13 12 17 17 C 1.52994 * 109.47447 * 179.97438 * 16 15 13 18 18 C 1.50700 * 109.47125 * 179.97438 * 17 16 15 19 19 C 1.38255 * 119.94670 * 89.99827 * 18 17 16 20 20 C 1.38196 * 120.11173 * 180.31458 * 19 18 17 21 21 C 1.38702 * 120.06979 * 359.51950 * 20 19 18 22 22 C 1.38976 * 119.81854 * 0.36316 * 21 20 19 23 23 C 1.38201 * 119.94410 * 269.97635 * 18 17 16 24 24 O 1.36106 * 120.78195 * 180.02562 * 22 21 20 25 25 C 1.43170 * 116.71819 * 342.81004 * 24 22 21 26 26 C 1.53473 * 108.24794 * 46.16489 * 25 24 22 27 27 O 1.36101 * 119.39791 * 180.02562 * 21 20 19 28 28 H 0.96993 * 120.00202 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.46770 * 60.00330 * 9 7 2 30 30 H 1.09001 * 109.47493 * 300.00861 * 9 7 2 31 31 H 1.08996 * 109.47397 * 60.00651 * 10 9 7 32 32 H 1.08997 * 109.47345 * 300.00021 * 10 9 7 33 33 H 1.09002 * 109.47378 * 59.99980 * 11 10 9 34 34 H 1.09011 * 109.46649 * 300.00064 * 11 10 9 35 35 H 0.97007 * 120.00079 * 359.97438 * 12 11 10 36 36 H 0.97007 * 120.00039 * 359.97438 * 15 13 12 37 37 H 1.08997 * 109.47389 * 59.99242 * 16 15 13 38 38 H 1.09005 * 109.46295 * 299.99617 * 16 15 13 39 39 H 1.08997 * 109.47396 * 59.99307 * 17 16 15 40 40 H 1.09005 * 109.47110 * 299.99178 * 17 16 15 41 41 H 1.08002 * 119.93919 * 0.02892 * 19 18 17 42 42 H 1.07998 * 119.96440 * 179.75357 * 20 19 18 43 43 H 1.08008 * 119.96288 * 359.96279 * 23 18 17 44 44 H 1.09002 * 109.70738 * 165.84852 * 25 24 22 45 45 H 1.08992 * 109.70951 * 286.47831 * 25 24 22 46 46 H 1.08997 * 109.71202 * 59.95098 * 26 25 24 47 47 H 1.09000 * 109.70748 * 180.57584 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0005 11 6 1.4806 -4.9871 -0.0012 12 7 2.4326 -6.1005 -0.0006 13 6 1.9834 -7.3712 -0.0015 14 8 0.7881 -7.5935 -0.0024 15 7 2.8592 -8.3956 -0.0004 16 6 2.3711 -9.7768 -0.0020 17 6 3.5611 -10.7384 -0.0009 18 6 3.0588 -12.1592 -0.0019 19 6 2.8301 -12.8096 -1.2004 20 6 2.3634 -14.1103 -1.2053 21 6 2.1325 -14.7704 -0.0074 22 6 2.3647 -14.1175 1.1973 23 6 2.8280 -12.8102 1.1951 24 8 2.1453 -14.7466 2.3841 25 6 1.3302 -15.9231 2.3480 26 6 1.8066 -16.8022 1.1837 27 8 1.6733 -16.0514 -0.0282 28 1 -0.4850 0.8400 0.0004 29 1 0.6243 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8896 31 1 2.8721 -3.6043 0.8895 32 1 2.8722 -3.6042 -0.8905 33 1 0.8542 -5.0446 -0.8914 34 1 0.8536 -5.0450 0.8887 35 1 3.3863 -5.9232 -0.0002 36 1 3.8130 -8.2183 0.0007 37 1 1.7670 -9.9478 -0.8931 38 1 1.7639 -9.9485 0.8869 39 1 4.1654 -10.5676 0.8899 40 1 4.1678 -10.5666 -0.8901 41 1 3.0122 -12.2986 -2.1342 42 1 2.1817 -14.6147 -2.1428 43 1 3.0084 -12.3002 2.1300 44 1 1.4310 -16.4691 3.2860 45 1 0.2879 -15.6435 2.1949 46 1 2.8507 -17.0766 1.3335 47 1 1.1939 -17.7020 1.1279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171726414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:23:36 Heat of formation + Delta-G solvation = -122.736637 kcal Electronic energy + Delta-G solvation = -26667.285050 eV Core-core repulsion = 22620.934967 eV Total energy + Delta-G solvation = -4046.350083 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.22309 -41.00857 -39.23305 -38.24820 -37.14710 -36.16307 -35.16435 -33.58922 -32.69663 -31.86330 -30.56907 -28.96997 -28.02373 -25.80991 -24.96643 -24.09689 -23.23702 -22.28119 -21.89505 -21.30797 -19.64534 -19.15996 -18.50557 -18.24819 -18.11125 -17.29526 -16.93299 -16.48553 -16.40726 -16.12896 -15.92297 -15.58763 -15.41414 -15.33500 -15.26450 -15.00916 -14.84479 -14.48837 -14.23099 -13.94410 -13.71071 -13.49411 -13.25130 -12.84814 -12.69669 -12.66862 -12.52650 -12.37550 -12.17866 -12.01042 -11.89166 -11.63831 -11.63509 -11.44159 -11.29357 -11.13039 -10.52480 -10.37116 -9.73792 -9.61382 -9.02873 -8.16990 -6.28684 0.22458 0.30216 1.43402 1.46589 1.54341 1.73083 2.04916 2.17387 2.29685 2.44085 2.66311 3.16695 3.28234 3.35953 3.66230 3.90416 3.92261 4.04587 4.08789 4.10174 4.21129 4.26276 4.31136 4.32367 4.43606 4.55910 4.56678 4.59241 4.66319 4.80417 4.98546 4.99039 5.03352 5.11168 5.13239 5.18437 5.20279 5.48734 5.51557 5.57304 5.57741 5.68246 5.73908 5.86689 5.90339 6.06381 6.25036 6.39891 6.88554 7.16809 7.40892 7.61921 8.94893 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.038504 B = 0.001350 C = 0.001339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.021153 B =20736.698527 C =20904.235012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.003 4.003 3 Si 0.967 3.033 4 H -0.265 1.265 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.149 3.851 12 N -0.729 5.729 13 C 0.695 3.305 14 O -0.644 6.644 15 N -0.729 5.729 16 C 0.145 3.855 17 C -0.073 4.073 18 C -0.078 4.078 19 C -0.107 4.107 20 C -0.122 4.122 21 C 0.031 3.969 22 C 0.033 3.967 23 C -0.119 4.119 24 O -0.327 6.327 25 C 0.013 3.987 26 C 0.016 3.984 27 O -0.325 6.325 28 H 0.263 0.737 29 H -0.008 1.008 30 H -0.009 1.009 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.045 0.955 34 H 0.044 0.956 35 H 0.413 0.587 36 H 0.415 0.585 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.156 0.844 42 H 0.147 0.853 43 H 0.140 0.860 44 H 0.152 0.848 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.666 -36.993 1.378 38.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.015 4.015 10 C -0.138 4.138 11 C 0.024 3.976 12 N -0.385 5.385 13 C 0.395 3.605 14 O -0.526 6.526 15 N -0.386 5.386 16 C 0.021 3.979 17 C -0.110 4.110 18 C -0.079 4.079 19 C -0.125 4.125 20 C -0.140 4.140 21 C -0.014 4.014 22 C -0.012 4.012 23 C -0.137 4.137 24 O -0.242 6.242 25 C -0.061 4.061 26 C -0.059 4.059 27 O -0.241 6.241 28 H 0.071 0.929 29 H 0.010 0.990 30 H 0.010 0.990 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.250 0.750 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.174 0.826 42 H 0.165 0.835 43 H 0.158 0.842 44 H 0.170 0.830 45 H 0.093 0.907 46 H 0.099 0.901 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.422 -37.153 1.419 38.613 hybrid contribution 0.332 0.866 0.244 0.959 sum 10.755 -36.287 1.663 37.884 Atomic orbital electron populations 1.70108 1.07974 1.27814 1.51639 1.26023 0.95721 1.03544 0.94765 0.85467 0.78176 0.77915 0.79268 1.18994 1.21246 1.19016 1.21664 0.93789 0.91991 1.50562 0.91430 1.18950 0.94497 0.93011 0.95071 1.21586 0.98410 0.91588 1.02199 1.21067 0.91410 0.84749 1.00349 1.45005 1.10867 1.03484 1.79170 1.16208 0.85076 0.81505 0.77740 1.90898 1.16736 1.84896 1.60070 1.44882 1.09431 1.04542 1.79776 1.21143 0.96739 0.78613 1.01406 1.20661 0.96320 0.88125 1.05940 1.19530 1.00340 0.96073 0.91998 1.21159 0.98918 0.93543 0.98885 1.20709 1.01459 0.95669 0.96173 1.19171 1.02728 0.85561 0.93960 1.19078 1.04002 0.93696 0.84418 1.20549 1.02397 0.91058 0.99713 1.86275 1.68321 1.41901 1.27681 1.23935 0.94432 0.85050 1.02722 1.23925 1.04192 0.95248 0.82506 1.86276 1.78478 1.21709 1.37600 0.92863 0.98960 0.99015 0.91280 0.91224 0.93615 0.93717 0.75019 0.74737 0.92646 0.93340 0.88462 0.87525 0.82650 0.83547 0.84237 0.83040 0.90691 0.90101 0.83066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 2 C 0.00 -0.16 5.46 84.66 0.46 0.30 16 3 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.54 -30.27 9.11 25.60 0.23 -30.04 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 9 C 0.02 1.18 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.85 5.27 30.60 0.16 -3.68 16 11 C 0.15 5.40 5.67 86.38 0.49 5.89 16 12 N -0.73 -20.26 5.56 -478.53 -2.66 -22.92 16 13 C 0.70 20.91 8.57 179.06 1.53 22.44 16 14 O -0.64 -26.38 16.34 -3.98 -0.07 -26.44 16 15 N -0.73 -13.93 5.56 -478.55 -2.66 -16.59 16 16 C 0.15 2.63 5.66 86.38 0.49 3.12 16 17 C -0.07 -0.76 5.46 29.85 0.16 -0.60 16 18 C -0.08 -1.12 5.13 -19.87 -0.10 -1.23 16 19 C -0.11 -1.46 9.69 22.26 0.22 -1.24 16 20 C -0.12 -1.94 9.96 22.37 0.22 -1.71 16 21 C 0.03 0.58 6.49 22.56 0.15 0.72 16 22 C 0.03 0.64 6.49 22.56 0.15 0.78 16 23 C -0.12 -2.05 9.61 22.37 0.22 -1.83 16 24 O -0.33 -5.88 10.42 -82.52 -0.86 -6.74 16 25 C 0.01 0.13 7.26 72.14 0.52 0.66 16 26 C 0.02 0.14 7.26 72.14 0.52 0.67 16 27 O -0.33 -5.53 10.42 -82.47 -0.86 -6.39 16 28 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.41 8.23 8.49 -92.70 -0.79 7.44 16 36 H 0.42 4.60 8.49 -92.70 -0.79 3.81 16 37 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 39 H 0.10 0.76 8.08 -2.39 -0.02 0.74 16 40 H 0.11 0.68 8.09 -2.38 -0.02 0.66 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.34 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.83 16 43 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 44 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 46 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 47 H 0.15 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -80.88 395.58 0.19 -80.69 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -0.59 Total: 14.18 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: 5.57 Total: -4.44 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -5.04 Total: -96.63 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -1.78 Total: -39.57 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -80.88 0.19 -80.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171726414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.043 kcal (2) G-P(sol) polarization free energy of solvation -80.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds