Wall clock time and date at job start Tue Mar 31 2020 23:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86802 * 120.00097 * 2 1 4 4 H 1.48496 * 109.47067 * 269.99516 * 3 2 1 5 5 H 1.48498 * 109.46955 * 29.99799 * 3 2 1 6 6 H 1.48503 * 109.46865 * 149.99691 * 3 2 1 7 7 C 1.39897 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00607 * 191.16656 * 7 2 1 9 9 C 1.41162 * 119.99699 * 11.16845 * 7 2 1 10 10 C 1.40874 * 120.15811 * 210.55937 * 9 7 2 11 11 C 1.36378 * 119.82273 * 179.97438 * 10 9 7 12 12 C 1.39482 * 120.16805 * 359.97438 * 11 10 9 13 13 N 1.39241 * 119.83003 * 179.97438 * 12 11 10 14 14 C 1.34776 * 120.00155 * 213.50535 * 13 12 11 15 15 O 1.21586 * 119.99617 * 7.58145 * 14 13 12 16 16 N 1.34771 * 120.00584 * 187.56972 * 14 13 12 17 17 C 1.46929 * 120.62585 * 354.54852 * 16 14 13 18 18 C 1.53199 * 108.77393 * 233.62216 * 17 16 14 19 19 C 1.53040 * 109.31043 * 305.37003 * 18 17 16 20 20 C 1.53039 * 109.54119 * 61.36124 * 19 18 17 21 21 H 1.08998 * 109.51981 * 58.60776 * 20 19 18 22 22 O 1.42908 * 109.49522 * 178.68061 * 20 19 18 23 23 C 1.42896 * 113.99795 * 209.84007 * 22 20 19 24 24 C 1.53002 * 109.46786 * 180.02562 * 23 22 20 25 25 O 1.42893 * 109.47362 * 64.99998 * 24 23 22 26 26 C 1.46919 * 120.63420 * 174.56155 * 16 14 13 27 27 C 1.39481 * 120.33752 * 0.25439 * 12 11 10 28 28 C 1.36377 * 120.16616 * 359.48270 * 27 12 11 29 29 H 0.96998 * 120.00082 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.09111 * 359.95214 * 10 9 7 31 31 H 1.07995 * 119.91317 * 180.02562 * 11 10 9 32 32 H 0.96997 * 120.00516 * 33.51440 * 13 12 11 33 33 H 1.08996 * 109.58907 * 353.41259 * 17 16 14 34 34 H 1.09006 * 109.58707 * 113.69995 * 17 16 14 35 35 H 1.08997 * 109.49224 * 65.31357 * 18 17 16 36 36 H 1.08992 * 109.49639 * 185.41604 * 18 17 16 37 37 H 1.09003 * 109.46231 * 301.33732 * 19 18 17 38 38 H 1.09000 * 109.45664 * 181.38935 * 19 18 17 39 39 H 1.08998 * 109.46930 * 300.00051 * 23 22 20 40 40 H 1.08995 * 109.47545 * 59.99874 * 23 22 20 41 41 H 1.09008 * 109.46693 * 185.00320 * 24 23 22 42 42 H 1.09000 * 109.46635 * 304.99302 * 24 23 22 43 43 H 0.96706 * 114.00177 * 179.97438 * 25 24 23 44 44 H 1.08997 * 109.58734 * 6.58731 * 26 16 14 45 45 H 1.09008 * 109.58884 * 246.16186 * 26 16 14 46 46 H 1.07993 * 119.91816 * 179.74587 * 27 12 11 47 47 H 1.07992 * 120.09069 * 180.27616 * 28 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 2.4904 2.0463 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4401 0.7001 7 6 2.0083 -1.2115 0.0005 8 1 3.0729 -1.2204 0.1817 9 6 1.3225 -2.4225 -0.2357 10 6 1.7745 -3.6188 0.3552 11 6 1.1065 -4.7848 0.1228 12 6 -0.0218 -4.7947 -0.6972 13 7 -0.6982 -5.9893 -0.9302 14 6 -1.2883 -6.2082 -2.1220 15 8 -1.1155 -5.4279 -3.0383 16 7 -2.0697 -7.2920 -2.2982 17 6 -2.1931 -8.3055 -1.2416 18 6 -1.8642 -9.6791 -1.8351 19 6 -2.7548 -9.9300 -3.0541 20 6 -2.4783 -8.8652 -4.1180 21 1 -1.4259 -8.8970 -4.4001 22 8 -3.2882 -9.1184 -5.2679 23 6 -2.7026 -8.6862 -6.4977 24 6 -3.6520 -9.0054 -7.6544 25 8 -4.8484 -8.2367 -7.5146 26 6 -2.8141 -7.4827 -3.5504 27 6 -0.4726 -3.6151 -1.2896 28 6 0.1819 -2.4405 -1.0622 29 1 -0.4850 0.8400 -0.0004 30 1 2.6480 -3.6126 0.9904 31 1 1.4515 -5.7026 0.5754 32 1 -0.7449 -6.6639 -0.2348 33 1 -1.4956 -8.0795 -0.4351 34 1 -3.2119 -8.3072 -0.8540 35 1 -0.8175 -9.7031 -2.1382 36 1 -2.0449 -10.4512 -1.0874 37 1 -3.8019 -9.8813 -2.7551 38 1 -2.5401 -10.9171 -3.4636 39 1 -2.5269 -7.6112 -6.4584 40 1 -1.7557 -9.2038 -6.6510 41 1 -3.1690 -8.7575 -8.5997 42 1 -3.8983 -10.0671 -7.6398 43 1 -5.4974 -8.3884 -8.2153 44 1 -2.5265 -6.7136 -4.2672 45 1 -3.8843 -7.4189 -3.3527 46 1 -1.3445 -3.6313 -1.9266 47 1 -0.1708 -1.5271 -1.5179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172655806.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:43 Heat of formation + Delta-G solvation = -94.882344 kcal Electronic energy + Delta-G solvation = -28525.211482 eV Core-core repulsion = 24480.069252 eV Total energy + Delta-G solvation = -4045.142230 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 3.65 seconds Orbital eigenvalues (eV) -40.45420 -38.91820 -37.66667 -36.94840 -36.07605 -34.47437 -33.06215 -32.40810 -30.86247 -29.47650 -29.27727 -28.61851 -25.78423 -24.45401 -23.38077 -22.52560 -21.60673 -21.21561 -20.47040 -19.07460 -18.17136 -17.91505 -17.24307 -16.96821 -16.53483 -15.71351 -15.46932 -15.23176 -14.89017 -14.78219 -14.69025 -14.13991 -13.90672 -13.75162 -13.61256 -13.25654 -13.05839 -12.84923 -12.56511 -12.46623 -12.01081 -11.97748 -11.75096 -11.41644 -11.36907 -11.24063 -11.17609 -11.08212 -10.99199 -10.74594 -10.64427 -10.37388 -9.90272 -9.86557 -9.65626 -9.42730 -9.15202 -8.88662 -8.49840 -7.48288 -6.86481 -6.62754 -4.25620 2.66886 2.83165 3.09841 3.12022 3.15447 3.18376 3.42780 3.70003 3.93768 4.00144 4.23576 4.56423 4.59813 4.69104 4.74148 4.76951 4.84273 4.89985 5.00555 5.10545 5.21164 5.28905 5.40945 5.46776 5.56299 5.60196 5.66299 5.72600 5.75368 5.94654 5.98751 6.16992 6.38904 6.45084 6.84184 6.86272 7.02442 7.08930 7.16338 7.31690 7.33687 7.36112 7.66744 7.84054 8.03277 8.11590 8.31237 8.46131 8.68945 8.95482 8.96152 9.12571 10.30713 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.017276 B = 0.002338 C = 0.002127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.354693 B =11972.830683 C =13162.928704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.072 3.928 3 Si 0.910 3.090 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.103 3.897 10 C -0.208 4.208 11 C -0.112 4.112 12 C 0.022 3.978 13 N -0.667 5.667 14 C 0.699 3.301 15 O -0.574 6.574 16 N -0.632 5.632 17 C 0.109 3.891 18 C -0.132 4.132 19 C -0.113 4.113 20 C 0.077 3.923 21 H 0.064 0.936 22 O -0.371 6.371 23 C 0.058 3.942 24 C 0.080 3.920 25 O -0.564 6.564 26 C 0.113 3.887 27 C -0.090 4.090 28 C -0.143 4.143 29 H 0.279 0.721 30 H 0.096 0.904 31 H 0.089 0.911 32 H 0.390 0.610 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.378 0.622 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.382 -20.067 -8.103 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.144 4.144 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.493 4.493 8 H 0.095 0.905 9 C 0.101 3.899 10 C -0.228 4.228 11 C -0.133 4.133 12 C -0.071 4.071 13 N -0.315 5.315 14 C 0.402 3.598 15 O -0.450 6.450 16 N -0.372 5.372 17 C -0.014 4.014 18 C -0.170 4.170 19 C -0.151 4.151 20 C 0.018 3.982 21 H 0.082 0.918 22 O -0.290 6.290 23 C -0.019 4.019 24 C 0.002 3.998 25 O -0.369 6.369 26 C -0.011 4.011 27 C -0.110 4.110 28 C -0.163 4.163 29 H 0.090 0.910 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.225 0.775 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.224 0.776 44 H 0.113 0.887 45 H 0.089 0.911 46 H 0.120 0.880 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.346 -19.186 -8.229 22.131 hybrid contribution 0.290 0.237 -0.117 0.393 sum -7.056 -18.949 -8.346 21.875 Atomic orbital electron populations 1.69816 1.07379 1.28974 1.36700 1.25878 0.94823 1.01133 0.92554 0.86283 0.80286 0.80718 0.79188 1.19408 1.20398 1.18753 1.19493 0.95956 0.90575 1.43298 0.90545 1.17668 0.91677 0.92152 0.88423 1.20582 1.03090 0.93258 1.05894 1.19994 0.94523 0.97244 1.01493 1.17019 0.97253 0.83821 1.08969 1.42310 1.56318 1.19487 1.13352 1.15877 0.79163 0.81335 0.83460 1.90917 1.65752 1.47283 1.41078 1.47186 1.49891 1.22912 1.17256 1.21642 1.02033 0.87700 0.90071 1.21918 1.00449 0.97040 0.97612 1.21553 1.00940 0.98256 0.94346 1.22458 0.94636 0.94903 0.86217 0.91815 1.87942 1.45256 1.81942 1.13811 1.22636 0.94954 1.00186 0.84137 1.22179 0.86273 0.95139 0.96248 1.86600 1.29152 1.67701 1.53480 1.21801 0.95916 0.97373 0.86054 1.20438 0.99536 0.91425 0.99630 1.20976 0.98722 0.96243 1.00384 0.91018 0.88567 0.89258 0.77467 0.90208 0.91163 0.91218 0.89966 0.90783 0.91111 0.92030 0.91843 0.92177 0.92913 0.77582 0.88736 0.91079 0.88043 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.44 10.97 55.55 0.61 -20.83 16 2 C 0.07 1.87 5.23 -17.34 -0.09 1.78 16 3 Si 0.91 19.24 29.57 -169.99 -5.03 14.21 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.06 16 7 C -0.46 -12.52 9.04 -37.85 -0.34 -12.86 16 8 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 9 C 0.10 2.82 5.53 -106.79 -0.59 2.23 16 10 C -0.21 -5.12 9.74 -39.26 -0.38 -5.50 16 11 C -0.11 -2.50 9.89 -39.79 -0.39 -2.89 16 12 C 0.02 0.50 6.28 -83.57 -0.52 -0.02 16 13 N -0.67 -12.35 5.22 -14.10 -0.07 -12.43 16 14 C 0.70 13.28 7.98 -86.92 -0.69 12.58 16 15 O -0.57 -13.39 13.51 5.29 0.07 -13.32 16 16 N -0.63 -9.00 2.97 -178.50 -0.53 -9.53 16 17 C 0.11 1.09 6.39 -3.71 -0.02 1.06 16 18 C -0.13 -1.05 6.08 -26.61 -0.16 -1.21 16 19 C -0.11 -1.00 5.53 -26.69 -0.15 -1.14 16 20 C 0.08 0.86 2.76 -26.61 -0.07 0.78 16 21 H 0.06 0.73 7.79 -51.93 -0.40 0.33 16 22 O -0.37 -4.35 9.96 -40.09 -0.40 -4.75 16 23 C 0.06 0.57 6.13 37.16 0.23 0.80 16 24 C 0.08 0.63 7.43 37.16 0.28 0.91 16 25 O -0.56 -5.46 13.62 -40.09 -0.55 -6.00 16 26 C 0.11 1.53 6.06 -3.72 -0.02 1.51 16 27 C -0.09 -2.31 8.57 -39.79 -0.34 -2.66 16 28 C -0.14 -3.93 8.59 -39.26 -0.34 -4.27 16 29 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 30 H 0.10 2.20 8.06 -52.49 -0.42 1.77 16 31 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.39 5.70 6.30 -40.82 -0.26 5.44 16 33 H 0.08 0.73 5.64 -51.93 -0.29 0.44 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.69 8.02 -51.93 -0.42 0.28 16 40 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 41 H 0.06 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.38 1.74 9.12 45.56 0.42 2.15 16 44 H 0.09 1.52 6.87 -51.93 -0.36 1.16 16 45 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 46 H 0.10 2.65 6.46 -52.49 -0.34 2.31 16 47 H 0.12 3.38 6.36 -52.49 -0.33 3.05 16 LS Contribution 380.45 15.07 5.73 5.73 Total: -1.00 -34.02 380.45 -9.96 -43.98 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.18 Total: 11.83 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -3.62 Total: -8.91 kcal Atomic # 7 Polarization: -42.79 SS G_CDS: 0.01 Total: -42.78 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.87 Total: -24.07 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.02 -9.96 -43.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172655806.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.899 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.65 seconds